FvH4_5g20871

Lysine methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016856
Physical Location & Seq
Reverse (-)
12474408 .. 12475200
793 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g20871.t1

Sequence Viewer

Length: 663 bp
ATGCATCACTTACCGAGCCCAATCACGTCAACCAAAGCCCGGCCCATTCTCCTGCTGCAGCCAATCTCCGTCACTGACCGTGCAACCGAACTTCGCCGCCACGAACGACTCCGTCTTGGCTCAGATCGATGCTCCTCACGCCGCCATAGACGTTGCCAGGTTGGGATAGCCTTGACCAAGCCGTGCAAGAGAGATGAAGCTACAAAAGCATTGCGTTGTCGTCTGCAACTCCGACGCAACTTCCTTGGAGACCCTTCATCCTTCGTTCAATACCCATCTGGCAACCCCTCAATTAGCAAGGTAAAACCCAGCCATCCAAAGGCGTCGCCGGACAGGGAGTTGAGAGTGATTTGGTGCTCTAGCGGCGGAGGCGACCTCAGACTAAATAGCCATGAGACAAATCCAAGTCGCAACGACATCATTGTAATCCATGAGCTAGAAGACGTTTGTGACTCGGCCACTGGCCGAGCACTCACTGACTCATGGATTAGGGCCACAACTTTCGTCATTTTTAACTGGATGACCAACCAAAGCCCAACCAACTTCAATTTTCAAGACGCAATTGTTCTTGAGCACGGCGTAGGAGCTGGACTCCCCGGCTTGACTGTGGCTCAACTAGGAGCAAGCCATGTTGTGCTCACTGACATCAAGCCACTATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

221

Amino Acids

24.51

Weight (kDa)

9.83

Isoelectric Point (pI)

51.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016856)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20871
malus_domestica MD06G1042700.v1.1
pyrus_communis pycom06g03560
rosa_chinensis RchiOBHm_Chr7g0207961
rosa_laevigata RLG00000003269
rosa_multiflora Rmu_sc0000905.1_g000011
rosa_roxburghii Rroxscaffold_3G00250980
rosa_rugosa Rorug07G0100500
rosa_samantha Rh7AG235800 Rh7BG229700 Rh7CG249300 Rh7DG240200
rosa_wichuraiana Rw0G001250 Rw0G017670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 97, 142, 363, 366
AcoI YGGCCR 2 cut(s) 456, 463
AcyI GRCGYC 1 cut(s) 323
AfiI CCNNNNNNNGG 2 cut(s) 39, 319
AgsI TTSAA 3 cut(s) 269, 547, 554
AjiI CACGTC 1 cut(s) 27
AjnI CCWGG 1 cut(s) 156
AluBI AGCT 3 cut(s) 200, 436, 587
AluI AGCT 3 cut(s) 200, 436, 587
Alw21I GWGCWC 4 cut(s) 359, 472, 576, 639
Alw26I GTCTC 2 cut(s) 243, 389
AoxI GGCC 4 cut(s) 41, 456, 463, 492
ApeKI GCWGC 2 cut(s) 55, 58
AspS9I GGNCC 2 cut(s) 42, 492
AsuC2I CCSGG 2 cut(s) 40, 597
BanII GRGCYC 1 cut(s) 20
BbsI GAAGAC 1 cut(s) 447
Bbv12I GWGCWC 4 cut(s) 359, 472, 576, 639
BbvI GCAGC 2 cut(s) 42, 70
BccI CCATC 2 cut(s) 283, 321
BceAI ACGGC 2 cut(s) 166, 592
BciT130I CCWGG 1 cut(s) 158
BcnI CCSGG 2 cut(s) 40, 597
BcoDI GTCTC 2 cut(s) 243, 389
BfaI CTAG 4 cut(s) 360, 437, 617, 661
BfmI CTRYAG 1 cut(s) 56
BisI GCNGC 5 cut(s) 56, 59, 97, 142, 364
BlsI GCNGC 5 cut(s) 57, 60, 98, 143, 365
Bme1390I CCNGG 3 cut(s) 40, 158, 597
BmgBI CACGTC 1 cut(s) 27
BmgT120I GGNCC 2 cut(s) 42, 492
BmrFI CCNGG 3 cut(s) 40, 158, 597
BmsI GCATC 2 cut(s) 13, 119
BpiI GAAGAC 1 cut(s) 447
BplI GAGNNNNNCTC 4 cut(s) 360, 392, 576, 608
BpuEI CTTGAG 1 cut(s) 590
BpuMI CCSGG 2 cut(s) 40, 597
Bsa29I ATCGAT 1 cut(s) 127
BsaHI GRCGYC 1 cut(s) 323
BsaI GGTCTC 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 244, 595
Bsc4I CCNNNNNNNGG 2 cut(s) 39, 319
Bse1I ACTGG 2 cut(s) 466, 521
Bse3DI GCAATG 1 cut(s) 209
BseBI CCWGG 1 cut(s) 158
BseCI ATCGAT 1 cut(s) 127
BseDI CCNNGG 2 cut(s) 244, 595
BseGI GGATG 3 cut(s) 257, 313, 525
BseLI CCNNNNNNNGG 2 cut(s) 39, 319
BseMI GCAATG 1 cut(s) 209
BseMII CTCAG 2 cut(s) 135, 391
BseNI ACTGG 2 cut(s) 466, 521
BseRI GAGGAG 1 cut(s) 124
BseXI GCAGC 2 cut(s) 42, 70
BseYI CCCAGC 1 cut(s) 308
BshFI GGCC 4 cut(s) 43, 458, 465, 494
BshVI ATCGAT 1 cut(s) 127
BsiHKAI GWGCWC 4 cut(s) 359, 472, 576, 639
BsiSI CCGG 3 cut(s) 40, 329, 597
BslI CCNNNNNNNGG 2 cut(s) 39, 319
BsmAI GTCTC 2 cut(s) 243, 389
BsnI GGCC 4 cut(s) 43, 458, 465, 494
Bso31I GGTCTC 1 cut(s) 243
Bsp1286I GDGCHC 5 cut(s) 20, 359, 472, 576, 639
Bsp143I GATC 1 cut(s) 124
BspACI CCGC 4 cut(s) 97, 142, 363, 366
BspANI GGCC 4 cut(s) 43, 458, 465, 494
BspCNI CTCAG 2 cut(s) 134, 390
BspDI ATCGAT 1 cut(s) 127
BspMAI CTGCAG 1 cut(s) 60
BspTNI GGTCTC 1 cut(s) 243
BsrDI GCAATG 1 cut(s) 209
BsrI ACTGG 2 cut(s) 466, 521
BssECI CCNNGG 2 cut(s) 244, 595
BssMI GATC 1 cut(s) 124
BssNI GRCGYC 1 cut(s) 323
BssT1I CCWWGG 1 cut(s) 244
Bst2UI CCWGG 1 cut(s) 158
Bst4CI ACNGT 2 cut(s) 80, 607
BstACI GRCGYC 1 cut(s) 323
BstC8I GCNNGC 1 cut(s) 625
BstDEI CTNAG 2 cut(s) 121, 377
BstF5I GGATG 3 cut(s) 257, 313, 525
BstKTI GATC 1 cut(s) 127
BstMAI GTCTC 2 cut(s) 243, 389
BstMBI GATC 1 cut(s) 124
BstMWI GCNNNNNNNGC 4 cut(s) 138, 206, 363, 369
BstNI CCWGG 1 cut(s) 158
BstSCI CCNGG 3 cut(s) 38, 156, 595
BstSFI CTRYAG 1 cut(s) 56
BstV1I GCAGC 2 cut(s) 42, 70
BstV2I GAAGAC 1 cut(s) 447
Bsu15I ATCGAT 1 cut(s) 127
BsuRI GGCC 4 cut(s) 43, 458, 465, 494
BsuTUI ATCGAT 1 cut(s) 127
BtrI CACGTC 1 cut(s) 27
BtsCI GGATG 3 cut(s) 257, 313, 525
BtsIMutI CAGTG 4 cut(s) 72, 459, 474, 639
Cac8I GCNNGC 1 cut(s) 625
Cfr13I GGNCC 2 cut(s) 42, 492
ClaI ATCGAT 1 cut(s) 127
CseI GACGC 3 cut(s) 243, 312, 566
CviAII CATG 4 cut(s) 392, 431, 483, 629
DdeI CTNAG 2 cut(s) 121, 377
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
EaeI YGGCCR 2 cut(s) 456, 463
EciI GGCGGA 1 cut(s) 381
Eco130I CCWWGG 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 156
EcoT14I CCWWGG 1 cut(s) 244
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 4 cut(s) 395, 434, 486, 632
FaiI YATR 5 cut(s) 147, 393, 432, 484, 630
FatI CATG 4 cut(s) 391, 430, 482, 628
Fnu4HI GCNGC 5 cut(s) 56, 59, 97, 142, 364
FokI GGATG 3 cut(s) 244, 300, 532
FriOI GRGCYC 1 cut(s) 20
Fsp4HI GCNGC 5 cut(s) 56, 59, 97, 142, 364
FspBI CTAG 4 cut(s) 360, 437, 617, 661
GluI GCNGC 5 cut(s) 56, 59, 97, 142, 364
GsaI CCCAGC 1 cut(s) 312
HaeIII GGCC 4 cut(s) 43, 458, 465, 494
HapII CCGG 3 cut(s) 40, 329, 597
HgaI GACGC 3 cut(s) 243, 312, 566
Hin1I GRCGYC 1 cut(s) 323
Hin1II CATG 4 cut(s) 395, 434, 486, 632
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 4 cut(s) 108, 452, 479, 591
HpaII CCGG 3 cut(s) 40, 329, 597
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 3 cut(s) 124, 233, 380
Hpy188III TCNNGA 2 cut(s) 554, 569
Hpy8I GTNNAC 1 cut(s) 30
Hpy99I CGWCG 2 cut(s) 237, 328
HpyAV CCTTC 2 cut(s) 264, 271
HpyCH4III ACNGT 2 cut(s) 80, 607
HpyCH4IV ACGT 3 cut(s) 26, 151, 444
HpyCH4V TGCA 5 cut(s) 4, 58, 83, 186, 226
HpyF10VI GCNNNNNNNGC 4 cut(s) 138, 206, 363, 369
HpyF3I CTNAG 2 cut(s) 121, 377
HpySE526I ACGT 3 cut(s) 26, 151, 444
Hsp92I GRCGYC 1 cut(s) 323
Hsp92II CATG 4 cut(s) 395, 434, 486, 632
Kzo9I GATC 1 cut(s) 124
LmnI GCTCC 3 cut(s) 137, 584, 620
Lsp1109I GCAGC 2 cut(s) 42, 70
LweI GCATC 2 cut(s) 13, 119
MaeI CTAG 4 cut(s) 360, 437, 617, 661
MaeII ACGT 3 cut(s) 26, 151, 444
MaeIII GTNAC 2 cut(s) 70, 449
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MboII GAAGA 1 cut(s) 452
MfeI CAATTG 1 cut(s) 561
MhlI GDGCHC 5 cut(s) 20, 359, 472, 576, 639
MluCI AATT 3 cut(s) 291, 547, 561
MlyI GAGTC 4 cut(s) 102, 446, 473, 585
MmeI TCCRAC 1 cut(s) 256
MnlI CCTC 4 cut(s) 145, 298, 362, 386
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 513
MspI CCGG 3 cut(s) 40, 329, 597
MspR9I CCNGG 3 cut(s) 40, 158, 597
MunI CAATTG 1 cut(s) 561
MvaI CCWGG 1 cut(s) 158
MwoI GCNNNNNNNGC 4 cut(s) 138, 206, 363, 369
NciI CCSGG 2 cut(s) 40, 597
NdeII GATC 1 cut(s) 124
NlaIII CATG 4 cut(s) 395, 434, 486, 632
NmeAIII GCCGAG 2 cut(s) 434, 491
NmuCI GTSAC 2 cut(s) 70, 449
NsiI ATGCAT 1 cut(s) 6
PflFI GACNNNGTC 1 cut(s) 111
PkrI GCNGC 5 cut(s) 57, 60, 98, 143, 365
PleI GAGTC 4 cut(s) 102, 446, 473, 585
PpsI GAGTC 4 cut(s) 102, 446, 473, 585
Psp6I CCWGG 1 cut(s) 156
PspFI CCCAGC 1 cut(s) 308
PspGI CCWGG 1 cut(s) 156
PspPI GGNCC 2 cut(s) 42, 492
PstI CTGCAG 1 cut(s) 60
PsyI GACNNNGTC 1 cut(s) 111
SaqAI TTAA 1 cut(s) 513
SatI GCNGC 5 cut(s) 56, 59, 97, 142, 364
Sau3AI GATC 1 cut(s) 124
Sau96I GGNCC 2 cut(s) 42, 492
SchI GAGTC 4 cut(s) 102, 446, 473, 585
ScrFI CCNGG 3 cut(s) 40, 158, 597
SduI GDGCHC 5 cut(s) 20, 359, 472, 576, 639
SetI ASST 9 cut(s) 29, 154, 162, 202, 303, 378, 438, 447, 589
SfaNI GCATC 2 cut(s) 13, 119
SfcI CTRYAG 1 cut(s) 56
SmlI CTYRAG 1 cut(s) 569
SmoI CTYRAG 1 cut(s) 569
Sse9I AATT 3 cut(s) 291, 547, 561
SsiI CCGC 4 cut(s) 97, 142, 363, 366
SspMI CTAG 4 cut(s) 360, 437, 617, 661
StyD4I CCNGG 3 cut(s) 38, 156, 595
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 2 cut(s) 80, 607
TaiI ACGT 3 cut(s) 29, 154, 447
TaqI TCGA 1 cut(s) 127
TasI AATT 3 cut(s) 291, 547, 561
TauI GCSGC 3 cut(s) 99, 144, 366
Tru1I TTAA 1 cut(s) 513
Tru9I TTAA 1 cut(s) 513
TscAI CASTG 4 cut(s) 79, 466, 481, 646
TseFI GTSAC 2 cut(s) 70, 449
TseI GCWGC 2 cut(s) 55, 58
Tsp45I GTSAC 2 cut(s) 70, 449
TspDTI ATGAA 2 cut(s) 210, 246
TspGWI ACGGA 2 cut(s) 58, 101
TspRI CASTG 4 cut(s) 79, 466, 481, 646
Tth111I GACNNNGTC 1 cut(s) 111
XspI CTAG 4 cut(s) 360, 437, 617, 661
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.