Rh7DG240200

Lysine methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0016856
Physical Location & Seq
Forward (+)
24637331 .. 24637882
552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG240200.1

Sequence Viewer

Length: 552 bp
ATGACCAACCAAAGCCGAACAAACTTCAGTTTTCTAGGCAAGACCGTGCTTGAGCTTGGTGCAGGAGCTGGACTCCCCGGCTTGACCGCAGCCCGGCTAGGAGCGAGCCAAGTTGTGCTCACCGACATCAAGCCGCTGCTTCCAGGTTTGCTGAAGAATGTCGAAGCCAACGGACTTGGTGAACAAGTCAAGGTCAGGGAACTCATGTGGGGATCAGACGAGTCATTGAGCGAAGTCGGTGAGTTTGACTTGGTTTTGATGTCTGATGTGTTCTACAACGCCGAGGAGATGGTTGGCTTGGCCAAGACGTTGAAATGTGTGTGCAACAGAAAGACGACAGTTTTGGCAGCAACTGAGGTAAGGCCCTCAACTGCTGAGTGCCTGAGCGAGTTTGTTAGAGAAGGCTTTATGCTTGTTGAGTTGCCGAGTGAGTTCGCTTCTTCAGAAGGAATGGACACGGAGAGTTTGGATTCCTTTGCCATCTTCCAAGTCATACCACCGCATGAAGAAAGCCAAATGGATAGCCCTTGTAATCGAGACCACAGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

183

Amino Acids

19.89

Weight (kDa)

4.57

Isoelectric Point (pI)

37.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 12 - 123 1.4e-25 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016856)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20871
malus_domestica MD06G1042700.v1.1
pyrus_communis pycom06g03560
rosa_chinensis RchiOBHm_Chr7g0207961
rosa_laevigata RLG00000003269
rosa_multiflora Rmu_sc0000905.1_g000011
rosa_roxburghii Rroxscaffold_3G00250980
rosa_rugosa Rorug07G0100500
rosa_samantha Rh7AG235800 Rh7BG229700 Rh7CG249300 Rh7DG240200
rosa_wichuraiana Rw0G001250 Rw0G017670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 87, 134, 500
AclWI GGATC 1 cut(s) 220
AcoI YGGCCR 1 cut(s) 300
AcuI CTGAAG 3 cut(s) 10, 173, 426
AfiI CCNNNNNNNGG 1 cut(s) 93
AgsI TTSAA 1 cut(s) 313
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 2 cut(s) 55, 68
AluI AGCT 2 cut(s) 55, 68
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 1 cut(s) 531
AlwI GGATC 1 cut(s) 220
AlwNI CAGNNNCTG 2 cut(s) 68, 353
AoxI GGCC 2 cut(s) 300, 362
ApeKI GCWGC 3 cut(s) 89, 136, 347
ArsI GACNNNNNNTTYG 2 cut(s) 325, 357
AspS9I GGNCC 1 cut(s) 363
AsuC2I CCSGG 2 cut(s) 78, 94
AsuHPI GGTGA 3 cut(s) 112, 191, 251
BalI TGGCCA 1 cut(s) 302
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 3 cut(s) 101, 123, 359
BccI CCATC 2 cut(s) 283, 488
BciT130I CCWGG 1 cut(s) 144
BcnI CCSGG 2 cut(s) 78, 94
BcoDI GTCTC 1 cut(s) 531
BfaI CTAG 2 cut(s) 35, 98
BisI GCNGC 4 cut(s) 90, 134, 137, 348
BlsI GCNGC 4 cut(s) 91, 135, 138, 349
Bme1390I CCNGG 3 cut(s) 78, 94, 144
BmgT120I GGNCC 1 cut(s) 363
BmrFI CCNGG 3 cut(s) 78, 94, 144
BplI GAGNNNNNCTC 2 cut(s) 57, 89
Bpu10I CCTNAGC 1 cut(s) 383
BpuEI CTTGAG 1 cut(s) 71
BpuMI CCSGG 2 cut(s) 78, 94
BsaI GGTCTC 1 cut(s) 531
BsaJI CCNNGG 2 cut(s) 76, 282
Bsc4I CCNNNNNNNGG 1 cut(s) 93
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 2 cut(s) 76, 282
BseLI CCNNNNNNNGG 1 cut(s) 93
BseMII CTCAG 3 cut(s) 345, 366, 374
BseRI GAGGAG 1 cut(s) 299
BseXI GCAGC 3 cut(s) 101, 123, 359
BsgI GTGCAG 1 cut(s) 81
BshFI GGCC 2 cut(s) 302, 364
BsiHKAI GWGCWC 1 cut(s) 120
BsiSI CCGG 2 cut(s) 78, 94
BslI CCNNNNNNNGG 1 cut(s) 93
BsmAI GTCTC 1 cut(s) 531
BsnI GGCC 2 cut(s) 302, 364
Bso31I GGTCTC 1 cut(s) 531
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 1 cut(s) 212
BspACI CCGC 3 cut(s) 87, 134, 500
BspANI GGCC 2 cut(s) 302, 364
BspCNI CTCAG 3 cut(s) 346, 367, 375
BspPI GGATC 1 cut(s) 220
BspTNI GGTCTC 1 cut(s) 531
BssECI CCNNGG 2 cut(s) 76, 282
BssMI GATC 1 cut(s) 212
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 2 cut(s) 46, 340
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 3 cut(s) 354, 375, 383
BstKTI GATC 1 cut(s) 215
BstMAI GTCTC 1 cut(s) 531
BstMBI GATC 1 cut(s) 212
BstNI CCWGG 1 cut(s) 144
BstSCI CCNGG 3 cut(s) 76, 92, 142
BstV1I GCAGC 3 cut(s) 101, 123, 359
BsuRI GGCC 2 cut(s) 302, 364
Cac8I GCNNGC 1 cut(s) 106
CaiI CAGNNNCTG 2 cut(s) 68, 353
Cfr13I GGNCC 1 cut(s) 363
CviAII CATG 3 cut(s) 205, 503, 549
DdeI CTNAG 3 cut(s) 354, 375, 383
DpnI GATC 1 cut(s) 214
DpnII GATC 1 cut(s) 212
EaeI YGGCCR 1 cut(s) 300
Eco31I GGTCTC 1 cut(s) 531
Eco57I CTGAAG 3 cut(s) 10, 173, 426
EcoO109I RGGNCCY 1 cut(s) 363
EcoRII CCWGG 1 cut(s) 142
FaeI CATG 3 cut(s) 208, 506, 552
FaiI YATR 5 cut(s) 206, 410, 494, 504, 550
FatI CATG 3 cut(s) 204, 502, 548
Fnu4HI GCNGC 4 cut(s) 90, 134, 137, 348
Fsp4HI GCNGC 4 cut(s) 90, 134, 137, 348
FspBI CTAG 2 cut(s) 35, 98
GluI GCNGC 4 cut(s) 90, 134, 137, 348
HaeIII GGCC 2 cut(s) 302, 364
HapII CCGG 2 cut(s) 78, 94
Hin1II CATG 3 cut(s) 208, 506, 552
HinfI GANTC 3 cut(s) 72, 221, 470
HpaII CCGG 2 cut(s) 78, 94
HphI GGTGA 3 cut(s) 112, 191, 251
Hpy166II GTNNAC 1 cut(s) 182
Hpy188I TCNGA 3 cut(s) 217, 265, 445
Hpy188III TCNNGA 1 cut(s) 536
Hpy8I GTNNAC 1 cut(s) 182
HpyAV CCTTC 2 cut(s) 395, 440
HpyCH4III ACNGT 2 cut(s) 46, 340
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 2 cut(s) 62, 324
HpyF3I CTNAG 3 cut(s) 354, 375, 383
HpySE526I ACGT 1 cut(s) 308
Hsp92II CATG 3 cut(s) 208, 506, 552
Kzo9I GATC 1 cut(s) 212
LmnI GCTCC 2 cut(s) 65, 101
LpnPI CCDG 9 cut(s) 48, 54, 91, 107, 129, 156, 181, 395, 529
Lsp1109I GCAGC 3 cut(s) 101, 123, 359
MaeI CTAG 2 cut(s) 35, 98
MaeII ACGT 1 cut(s) 308
MalI GATC 1 cut(s) 214
MboI GATC 1 cut(s) 212
MboII GAAGA 4 cut(s) 166, 432, 475, 518
MhlI GDGCHC 1 cut(s) 120
MlsI TGGCCA 1 cut(s) 302
MluNI TGGCCA 1 cut(s) 302
MlyI GAGTC 2 cut(s) 66, 230
MnlI CCTC 3 cut(s) 277, 349, 376
Mox20I TGGCCA 1 cut(s) 302
MscI TGGCCA 1 cut(s) 302
Msp20I TGGCCA 1 cut(s) 302
MspA1I CMGCKG 1 cut(s) 136
MspI CCGG 2 cut(s) 78, 94
MspR9I CCNGG 3 cut(s) 78, 94, 144
MvaI CCWGG 1 cut(s) 144
NciI CCSGG 2 cut(s) 78, 94
NdeII GATC 1 cut(s) 212
NlaIII CATG 3 cut(s) 208, 506, 552
NmeAIII GCCGAG 2 cut(s) 307, 450
PfeI GAWTC 1 cut(s) 470
PkrI GCNGC 4 cut(s) 91, 135, 138, 349
PleI GAGTC 2 cut(s) 66, 229
PpsI GAGTC 2 cut(s) 66, 229
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspPI GGNCC 1 cut(s) 363
PstNI CAGNNNCTG 2 cut(s) 68, 353
SatI GCNGC 4 cut(s) 90, 134, 137, 348
Sau3AI GATC 1 cut(s) 212
Sau96I GGNCC 1 cut(s) 363
SchI GAGTC 2 cut(s) 66, 230
ScrFI CCNGG 3 cut(s) 78, 94, 144
SduI GDGCHC 1 cut(s) 120
SetI ASST 6 cut(s) 57, 70, 148, 195, 311, 360
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
SsiI CCGC 3 cut(s) 87, 134, 500
SspMI CTAG 2 cut(s) 35, 98
StyD4I CCNGG 3 cut(s) 76, 92, 142
TaaI ACNGT 2 cut(s) 46, 340
TaiI ACGT 1 cut(s) 311
TaqI TCGA 2 cut(s) 162, 535
TauI GCSGC 1 cut(s) 136
TfiI GAWTC 1 cut(s) 470
TseI GCWGC 3 cut(s) 89, 136, 347
TspDTI ATGAA 1 cut(s) 519
TspGWI ACGGA 2 cut(s) 186, 473
XspI CTAG 2 cut(s) 35, 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.