Rh7CG249300

Lysine methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0016856
Physical Location & Seq
Forward (+)
23496423 .. 23496974
552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG249300.1

Sequence Viewer

Length: 552 bp
ATGACCAACCAAAGCCGAACCAACTTCAGTTTTCTAGGCAAGACCGTGCTTGAGCTTGGTGCAGGAGCTGGACTCCCCGGCTTGACCGCAGCCCGGCTAGGAGCGAGCCAAGTTGTGCTCACCGACATCAAGCCGCTGCTTCCAGGTTTGCTGAAGAATGTCGAAGCCAACGGACTTGGTGAACAAGTCAAGGTCAGGGAACTCATGTGGGGATCAGACGAGTCATTGAGCGAAGTCGGTGAGTTTGACTTGGTTTTGATGTCAGATGTGTTCTACAACGCCGAGGAGATGGTTGGCTTGGCCAAGACGTTGAAATGTGTGTGCAACAGAAAGACGACAGTTTTGGCAGCAACTGAGGTAAGGCCCTCAACTGCTGAGTGCCTGAGCGAGTTTGTTAGAGAAGGCTTTATGCTTGTTGAGTTGCCGAGTGAGTTCGCCTCTTCAGAAGGAATGGACCCGGAGAGTTTGGATTCCTTTGCCATCTTCCAAGTCATACCACCGCATGAAGAAAGCCAAATGGATAGCCCTTGTAATCGAGACCACAGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

183

Amino Acids

19.89

Weight (kDa)

4.57

Isoelectric Point (pI)

38.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 12 - 123 1.4e-25 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016856)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20871
malus_domestica MD06G1042700.v1.1
pyrus_communis pycom06g03560
rosa_chinensis RchiOBHm_Chr7g0207961
rosa_laevigata RLG00000003269
rosa_multiflora Rmu_sc0000905.1_g000011
rosa_roxburghii Rroxscaffold_3G00250980
rosa_rugosa Rorug07G0100500
rosa_samantha Rh7AG235800 Rh7BG229700 Rh7CG249300 Rh7DG240200
rosa_wichuraiana Rw0G001250 Rw0G017670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 87, 134, 500
AclWI GGATC 1 cut(s) 220
AcoI YGGCCR 1 cut(s) 300
AcuI CTGAAG 3 cut(s) 10, 173, 426
AfiI CCNNNNNNNGG 1 cut(s) 93
AgsI TTSAA 1 cut(s) 313
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 2 cut(s) 55, 68
AluI AGCT 2 cut(s) 55, 68
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 1 cut(s) 531
AlwI GGATC 1 cut(s) 220
AlwNI CAGNNNCTG 2 cut(s) 68, 353
AoxI GGCC 2 cut(s) 300, 362
ApeKI GCWGC 3 cut(s) 89, 136, 347
ArsI GACNNNNNNTTYG 2 cut(s) 325, 357
AspS9I GGNCC 2 cut(s) 363, 454
AsuC2I CCSGG 3 cut(s) 78, 94, 458
AsuHPI GGTGA 3 cut(s) 112, 191, 251
AvaII GGWCC 1 cut(s) 454
BalI TGGCCA 1 cut(s) 302
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 3 cut(s) 101, 123, 359
BccI CCATC 2 cut(s) 283, 488
BciT130I CCWGG 1 cut(s) 144
BcnI CCSGG 3 cut(s) 78, 94, 458
BcoDI GTCTC 1 cut(s) 531
BfaI CTAG 2 cut(s) 35, 98
BisI GCNGC 4 cut(s) 90, 134, 137, 348
BlsI GCNGC 4 cut(s) 91, 135, 138, 349
Bme1390I CCNGG 4 cut(s) 78, 94, 144, 458
Bme18I GGWCC 1 cut(s) 454
BmgT120I GGNCC 2 cut(s) 363, 454
BmiI GGNNCC 1 cut(s) 456
BmrFI CCNGG 4 cut(s) 78, 94, 144, 458
BplI GAGNNNNNCTC 4 cut(s) 57, 89, 422, 454
Bpu10I CCTNAGC 1 cut(s) 383
BpuEI CTTGAG 1 cut(s) 71
BpuMI CCSGG 3 cut(s) 78, 94, 458
BsaI GGTCTC 1 cut(s) 531
BsaJI CCNNGG 2 cut(s) 76, 282
Bsc4I CCNNNNNNNGG 1 cut(s) 93
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 2 cut(s) 76, 282
BseLI CCNNNNNNNGG 1 cut(s) 93
BseMII CTCAG 3 cut(s) 345, 366, 374
BseRI GAGGAG 1 cut(s) 299
BseXI GCAGC 3 cut(s) 101, 123, 359
BsgI GTGCAG 1 cut(s) 81
BshFI GGCC 2 cut(s) 302, 364
BsiHKAI GWGCWC 1 cut(s) 120
BsiSI CCGG 3 cut(s) 78, 94, 458
BslI CCNNNNNNNGG 1 cut(s) 93
BsmAI GTCTC 1 cut(s) 531
BsnI GGCC 2 cut(s) 302, 364
Bso31I GGTCTC 1 cut(s) 531
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 1 cut(s) 212
BspACI CCGC 3 cut(s) 87, 134, 500
BspANI GGCC 2 cut(s) 302, 364
BspCNI CTCAG 3 cut(s) 346, 367, 375
BspLI GGNNCC 1 cut(s) 456
BspPI GGATC 1 cut(s) 220
BspTNI GGTCTC 1 cut(s) 531
BssECI CCNNGG 2 cut(s) 76, 282
BssMI GATC 1 cut(s) 212
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 2 cut(s) 46, 340
Bst6I CTCTTC 1 cut(s) 445
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 3 cut(s) 354, 375, 383
BstKTI GATC 1 cut(s) 215
BstMAI GTCTC 1 cut(s) 531
BstMBI GATC 1 cut(s) 212
BstNI CCWGG 1 cut(s) 144
BstSCI CCNGG 4 cut(s) 76, 92, 142, 456
BstV1I GCAGC 3 cut(s) 101, 123, 359
BsuRI GGCC 2 cut(s) 302, 364
Cac8I GCNNGC 1 cut(s) 106
CaiI CAGNNNCTG 2 cut(s) 68, 353
Cfr13I GGNCC 2 cut(s) 363, 454
CviAII CATG 3 cut(s) 205, 503, 549
DdeI CTNAG 3 cut(s) 354, 375, 383
DpnI GATC 1 cut(s) 214
DpnII GATC 1 cut(s) 212
EaeI YGGCCR 1 cut(s) 300
Eam1104I CTCTTC 1 cut(s) 445
EarI CTCTTC 1 cut(s) 445
Eco31I GGTCTC 1 cut(s) 531
Eco47I GGWCC 1 cut(s) 454
Eco57I CTGAAG 3 cut(s) 10, 173, 426
EcoO109I RGGNCCY 1 cut(s) 363
EcoRII CCWGG 1 cut(s) 142
FaeI CATG 3 cut(s) 208, 506, 552
FaiI YATR 5 cut(s) 206, 410, 494, 504, 550
FatI CATG 3 cut(s) 204, 502, 548
Fnu4HI GCNGC 4 cut(s) 90, 134, 137, 348
Fsp4HI GCNGC 4 cut(s) 90, 134, 137, 348
FspBI CTAG 2 cut(s) 35, 98
GluI GCNGC 4 cut(s) 90, 134, 137, 348
HaeIII GGCC 2 cut(s) 302, 364
HapII CCGG 3 cut(s) 78, 94, 458
Hin1II CATG 3 cut(s) 208, 506, 552
HinfI GANTC 3 cut(s) 72, 221, 470
HpaII CCGG 3 cut(s) 78, 94, 458
HphI GGTGA 3 cut(s) 112, 191, 251
Hpy166II GTNNAC 1 cut(s) 182
Hpy188I TCNGA 3 cut(s) 217, 265, 445
Hpy188III TCNNGA 1 cut(s) 536
Hpy8I GTNNAC 1 cut(s) 182
HpyAV CCTTC 2 cut(s) 395, 440
HpyCH4III ACNGT 2 cut(s) 46, 340
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 2 cut(s) 62, 324
HpyF3I CTNAG 3 cut(s) 354, 375, 383
HpySE526I ACGT 1 cut(s) 308
Hsp92II CATG 3 cut(s) 208, 506, 552
Kzo9I GATC 1 cut(s) 212
LmnI GCTCC 2 cut(s) 65, 101
Lsp1109I GCAGC 3 cut(s) 101, 123, 359
MaeI CTAG 2 cut(s) 35, 98
MaeII ACGT 1 cut(s) 308
MalI GATC 1 cut(s) 214
MboI GATC 1 cut(s) 212
MboII GAAGA 4 cut(s) 166, 432, 475, 518
MhlI GDGCHC 1 cut(s) 120
MlsI TGGCCA 1 cut(s) 302
MluNI TGGCCA 1 cut(s) 302
MlyI GAGTC 2 cut(s) 66, 230
MnlI CCTC 4 cut(s) 277, 349, 376, 448
Mox20I TGGCCA 1 cut(s) 302
MscI TGGCCA 1 cut(s) 302
Msp20I TGGCCA 1 cut(s) 302
MspA1I CMGCKG 1 cut(s) 136
MspI CCGG 3 cut(s) 78, 94, 458
MspR9I CCNGG 4 cut(s) 78, 94, 144, 458
MvaI CCWGG 1 cut(s) 144
NciI CCSGG 3 cut(s) 78, 94, 458
NdeII GATC 1 cut(s) 212
NlaIII CATG 3 cut(s) 208, 506, 552
NlaIV GGNNCC 1 cut(s) 456
NmeAIII GCCGAG 2 cut(s) 307, 450
PfeI GAWTC 1 cut(s) 470
PkrI GCNGC 4 cut(s) 91, 135, 138, 349
PleI GAGTC 2 cut(s) 66, 229
PpsI GAGTC 2 cut(s) 66, 229
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 1 cut(s) 456
PspPI GGNCC 2 cut(s) 363, 454
PstNI CAGNNNCTG 2 cut(s) 68, 353
SatI GCNGC 4 cut(s) 90, 134, 137, 348
Sau3AI GATC 1 cut(s) 212
Sau96I GGNCC 2 cut(s) 363, 454
SchI GAGTC 2 cut(s) 66, 230
ScrFI CCNGG 4 cut(s) 78, 94, 144, 458
SduI GDGCHC 1 cut(s) 120
SetI ASST 6 cut(s) 57, 70, 148, 195, 311, 360
SinI GGWCC 1 cut(s) 454
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
SsiI CCGC 3 cut(s) 87, 134, 500
SspMI CTAG 2 cut(s) 35, 98
StyD4I CCNGG 4 cut(s) 76, 92, 142, 456
TaaI ACNGT 2 cut(s) 46, 340
TaiI ACGT 1 cut(s) 311
TaqI TCGA 2 cut(s) 162, 535
TauI GCSGC 1 cut(s) 136
TfiI GAWTC 1 cut(s) 470
TseI GCWGC 3 cut(s) 89, 136, 347
TspDTI ATGAA 1 cut(s) 519
TspGWI ACGGA 1 cut(s) 186
VpaK11BI GGWCC 1 cut(s) 454
XspI CTAG 2 cut(s) 35, 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.