FvH4_5g21210

Man1-Src1p-C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011342
Physical Location & Seq
Forward (+)
12726334 .. 12730515
4182 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g21210.t1

Sequence Viewer

Length: 1155 bp
ATGTATTCGACTCCACAGAAGCGCCCCAAACCCAAACCCAGGCCTCACCCCAACTCCTCTCCATCACTCCTCGAGCCTCCCGAGACTCTCTTCCCCACCAAGGCCGAGTTTCTCCGCCTCCTCGCAGTCCTCGCCATCGCTACCTCCGTCTTTTTCTCCTTCAATTTCCTCTTCAACCCCCGCTCTAACCCCTTCTGCGACGGCCCCGATCCCTCCCTCGACTTCTTCTCCGATTCTTGTGAGCCGTGTCCGAGTCATGGACGATGCCAGGAAGGCCAGTTGCAGTGTGATCAAGGATATACGAAGCGGGGGAAGCTATGTGTAGAAGATGGAGTTATTCAGGACACAGCTACGAAACTTGCAGAAATGGTAGAGATTCGTCTTTGTGAAGCTTATGCGGAGTATCTGTGCCATGGGATTGGAACAATTTGGGTTGAACAGAATGACATATGGAATGACTTTGATAAGAATGAGCTGGCAGAACATGTTGGCTCAGACAATGCTATTTTTATGTATGCGAAACAAAGGGCAATGGAGATGATCAGTGGAATGTTGGACAGAAGGACAAATTCTCTGGGGGTCCAAGAGTTTAAGTGTCCTGACATGCTAGCAGAACACTATAAACCATCTTCCTGTCGCATCAGTCAATGGATCTCTGAGCATGCATTACTTATTTTTCCCGTTTGTGCAGCGCTTCTGGGAATCACGTTGTTACTTCGGAAATTCCACCAAAGGCAGTATCTTTCGACTAGAGTTGACGAGGTTTACCAACAGATATGTGAAGAGCTCGAGGAGAAAGCCTTGATGAATAGAGCGAATGAGAAATGTGAACCATGGGTTGTTGCCTCTACATTGCGTGATTCTCTTCTTTCCCTGAAAGAGAGGAAGAACCCTGAATTATGGAAAAAGGTTGAAGAGTTGGTTCGAGAAGATTCCCGCATGGATTGTTATCCAACATTGGTGAAAGGTGAATCAAAAGTAGTATGGGAATGGCAAGTTGAAGGATCTCTGAGCTCTTCAAGGAAAAGTAGAAAGGGTGAGGCTAGCAAATTGAAGTCCAGCAAAGGTACAGAAAGAAGTCCGGATCAACATCTCCATTCACTTAAGGCCGACCAAAGGCAATTGAATTTTGATACAACGATGTTGAGACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MSC

Protein Analysis

385

Amino Acids

44.04

Weight (kDa)

6.19

Isoelectric Point (pI)

41.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MSC PF09402 74 - 331 4.7e-17 Man1-Src1p-C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46560
fragaria_vesca FvH4_5g21210 FvH4_5g21210 FvH4_5g21210 FvH4_5g21210
malus_domestica MD06G1040000.v1.1
prunus_persica Prupe.5G046100_v2.0.a1 Prupe.5G046100_v2.0.a1
pyrus_communis pycom06g03340
rosa_chinensis RchiOBHm_Chr7g0208351
rosa_laevigata RLG00000003220
rosa_multiflora Rmu_sc0006741.1_g000001 Rmu_ssc0000063.1_g000001
rosa_roxburghii Rroxscaffold_3G00250530
rosa_rugosa Rorug07G0103800
rosa_samantha Rh7AG238200 Rh7BG233700 Rh7CG253700 Rh7DG243900
rosa_wichuraiana Rw7G020300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 183
AccIII TCCGGA 1 cut(s) 1081
AciI CCGC 5 cut(s) 115, 181, 307, 398, 937
AclWI GGATC 4 cut(s) 203, 659, 1012, 1092
AcsI RAATTY 3 cut(s) 568, 722, 1126
AfaI GTAC 1 cut(s) 1069
AfeI AGCGCT 1 cut(s) 693
AfiI CCNNNNNNNGG 4 cut(s) 39, 100, 257, 1116
AflII CTTAAG 1 cut(s) 1103
AflIII ACRYGT 1 cut(s) 484
AgsI TTSAA 8 cut(s) 163, 175, 437, 914, 1001, 1020, 1054, 1126
AjnI CCWGG 2 cut(s) 38, 267
AluBI AGCT 6 cut(s) 316, 350, 392, 475, 787, 1014
AluI AGCT 6 cut(s) 316, 350, 392, 475, 787, 1014
Alw21I GWGCWC 2 cut(s) 789, 1016
Alw26I GTCTC 2 cut(s) 77, 1141
AlwI GGATC 4 cut(s) 203, 659, 1012, 1092
Ama87I CYCGRG 3 cut(s) 71, 80, 788
Aor13HI TCCGGA 1 cut(s) 1081
Aor51HI AGCGCT 1 cut(s) 693
AoxI GGCC 5 cut(s) 41, 102, 202, 274, 1107
ApeKI GCWGC 1 cut(s) 689
ApoI RAATTY 3 cut(s) 568, 722, 1126
AspLEI GCGC 2 cut(s) 24, 694
AspS9I GGNCC 2 cut(s) 203, 580
AsuHPI GGTGA 4 cut(s) 38, 973, 980, 1049
AsuNHI GCTAGC 2 cut(s) 607, 1043
AvaI CYCGRG 3 cut(s) 71, 80, 788
AvaII GGWCC 1 cut(s) 580
BanII GRGCYC 2 cut(s) 789, 1016
Bbv12I GWGCWC 2 cut(s) 789, 1016
BbvI GCAGC 1 cut(s) 701
BccI CCATC 4 cut(s) 70, 143, 323, 634
BceAI ACGGC 2 cut(s) 217, 229
BciT130I CCWGG 2 cut(s) 40, 269
BclI TGATCA 2 cut(s) 289, 540
BcoDI GTCTC 2 cut(s) 77, 1141
BfaI CTAG 3 cut(s) 608, 750, 1044
BfoI RGCGCY 2 cut(s) 25, 695
BfrI CTTAAG 1 cut(s) 1103
BglI GCCNNNNNGGC 1 cut(s) 273
BisI GCNGC 1 cut(s) 690
BlsI GCNGC 1 cut(s) 691
Bme1390I CCNGG 2 cut(s) 40, 269
Bme18I GGWCC 1 cut(s) 580
BmeT110I CYCGRG 3 cut(s) 71, 80, 788
BmgT120I GGNCC 2 cut(s) 203, 580
BmiI GGNNCC 2 cut(s) 205, 581
BmrFI CCNGG 2 cut(s) 40, 269
BmsI GCATC 2 cut(s) 254, 648
BmtI GCTAGC 2 cut(s) 611, 1047
BsaBI GATNNNNATC 2 cut(s) 948, 1089
BsaJI CCNNGG 4 cut(s) 38, 99, 412, 833
BsaWI WCCGGW 1 cut(s) 1081
BsaXI ACNNNNNCTCC 6 cut(s) 38, 68, 212, 242, 392, 422
Bsc4I CCNNNNNNNGG 4 cut(s) 39, 100, 257, 1116
Bse1I ACTGG 1 cut(s) 277
Bse3DI GCAATG 2 cut(s) 537, 851
Bse8I GATNNNNATC 2 cut(s) 948, 1089
BseAI TCCGGA 1 cut(s) 1081
BseBI CCWGG 2 cut(s) 40, 269
BseDI CCNNGG 4 cut(s) 38, 99, 412, 833
BseJI GATNNNNATC 2 cut(s) 948, 1089
BseLI CCNNNNNNNGG 4 cut(s) 39, 100, 257, 1116
BseMI GCAATG 2 cut(s) 537, 851
BseMII CTCAG 3 cut(s) 507, 648, 1001
BseNI ACTGG 1 cut(s) 277
BseRI GAGGAG 4 cut(s) 46, 59, 110, 806
BseXI GCAGC 1 cut(s) 701
BsgI GTGCAG 1 cut(s) 708
BshFI GGCC 5 cut(s) 43, 104, 204, 276, 1109
BsiHKAI GWGCWC 2 cut(s) 789, 1016
BsiHKCI CYCGRG 3 cut(s) 71, 80, 788
BsiSI CCGG 1 cut(s) 1082
BslI CCNNNNNNNGG 4 cut(s) 39, 100, 257, 1116
BsmAI GTCTC 2 cut(s) 77, 1141
BsnI GGCC 5 cut(s) 43, 104, 204, 276, 1109
BsoBI CYCGRG 3 cut(s) 71, 80, 788
Bsp1286I GDGCHC 2 cut(s) 789, 1016
Bsp13I TCCGGA 1 cut(s) 1081
Bsp143I GATC 6 cut(s) 208, 289, 540, 651, 1004, 1084
Bsp19I CCATGG 2 cut(s) 412, 833
BspACI CCGC 5 cut(s) 115, 181, 307, 398, 937
BspANI GGCC 5 cut(s) 43, 104, 204, 276, 1109
BspCNI CTCAG 3 cut(s) 506, 649, 1002
BspEI TCCGGA 1 cut(s) 1081
BspLI GGNNCC 2 cut(s) 205, 581
BspOI GCTAGC 2 cut(s) 611, 1047
BspPI GGATC 4 cut(s) 203, 659, 1012, 1092
BspQI GCTCTTC 2 cut(s) 777, 1021
BspTI CTTAAG 1 cut(s) 1103
BsrBI CCGCTC 1 cut(s) 183
BsrDI GCAATG 2 cut(s) 537, 851
BsrI ACTGG 1 cut(s) 277
BssECI CCNNGG 4 cut(s) 38, 99, 412, 833
BssMI GATC 6 cut(s) 208, 289, 540, 651, 1004, 1084
BssT1I CCWWGG 3 cut(s) 99, 412, 833
Bst2UI CCWGG 2 cut(s) 40, 269
Bst4CI ACNGT 1 cut(s) 1152
Bst6I CTCTTC 6 cut(s) 95, 176, 777, 870, 909, 1021
BstAFI CTTAAG 1 cut(s) 1103
BstC8I GCNNGC 4 cut(s) 477, 609, 663, 1045
BstDEI CTNAG 3 cut(s) 493, 657, 1010
BstDSI CCRYGG 2 cut(s) 412, 833
BstH2I RGCGCY 2 cut(s) 25, 695
BstHHI GCGC 2 cut(s) 24, 694
BstKTI GATC 6 cut(s) 211, 292, 543, 654, 1007, 1087
BstMAI GTCTC 2 cut(s) 77, 1141
BstMBI GATC 6 cut(s) 208, 289, 540, 651, 1004, 1084
BstMWI GCNNNNNNNGC 3 cut(s) 131, 273, 313
BstNI CCWGG 2 cut(s) 40, 269
BstNSI RCATGY 3 cut(s) 488, 607, 665
BstSCI CCNGG 2 cut(s) 38, 267
BstV1I GCAGC 1 cut(s) 701
BstX2I RGATCY 2 cut(s) 651, 1004
BstXI CCANNNNNNTGG 1 cut(s) 419
BstYI RGATCY 2 cut(s) 651, 1004
BsuRI GGCC 5 cut(s) 43, 104, 204, 276, 1109
BtgI CCRYGG 2 cut(s) 412, 833
BtgZI GCGATG 1 cut(s) 121
BtsI GCAGTG 1 cut(s) 290
BtsIMutI CAGTG 2 cut(s) 290, 550
Cac8I GCNNGC 4 cut(s) 477, 609, 663, 1045
CfoI GCGC 2 cut(s) 24, 694
Cfr13I GGNCC 2 cut(s) 203, 580
Csp6I GTAC 1 cut(s) 1068
CviAII CATG 7 cut(s) 257, 413, 485, 604, 662, 834, 940
CviQI GTAC 1 cut(s) 1068
DdeI CTNAG 3 cut(s) 493, 657, 1010
DpnI GATC 6 cut(s) 210, 291, 542, 653, 1006, 1086
DpnII GATC 6 cut(s) 208, 289, 540, 651, 1004, 1084
Eam1104I CTCTTC 6 cut(s) 95, 176, 777, 870, 909, 1021
EarI CTCTTC 6 cut(s) 95, 176, 777, 870, 909, 1021
EciI GGCGGA 1 cut(s) 104
Ecl136II GAGCTC 2 cut(s) 787, 1014
Eco130I CCWWGG 3 cut(s) 99, 412, 833
Eco147I AGGCCT 1 cut(s) 43
Eco24I GRGCYC 2 cut(s) 789, 1016
Eco47I GGWCC 1 cut(s) 580
Eco47III AGCGCT 1 cut(s) 693
Eco53kI GAGCTC 2 cut(s) 787, 1014
Eco88I CYCGRG 3 cut(s) 71, 80, 788
EcoICRI GAGCTC 2 cut(s) 787, 1014
EcoRII CCWGG 2 cut(s) 38, 267
EcoT14I CCWWGG 3 cut(s) 99, 412, 833
EcoT22I ATGCAT 1 cut(s) 667
EcoT38I GRGCYC 2 cut(s) 789, 1016
ErhI CCWWGG 3 cut(s) 99, 412, 833
FaeI CATG 7 cut(s) 260, 416, 488, 607, 665, 837, 943
FatI CATG 7 cut(s) 256, 412, 484, 603, 661, 833, 939
FauI CCCGC 3 cut(s) 188, 300, 944
FauNDI CATATG 1 cut(s) 449
FbaI TGATCA 2 cut(s) 289, 540
Fnu4HI GCNGC 1 cut(s) 690
FriOI GRGCYC 2 cut(s) 789, 1016
Fsp4HI GCNGC 1 cut(s) 690
FspBI CTAG 3 cut(s) 608, 750, 1044
GlaI GCGC 2 cut(s) 23, 693
GluI GCNGC 1 cut(s) 690
HaeII RGCGCY 2 cut(s) 25, 695
HaeIII GGCC 5 cut(s) 43, 104, 204, 276, 1109
HapII CCGG 1 cut(s) 1082
HhaI GCGC 2 cut(s) 24, 694
Hin1II CATG 7 cut(s) 260, 416, 488, 607, 665, 837, 943
Hin6I GCGC 2 cut(s) 22, 692
HinP1I GCGC 2 cut(s) 22, 692
HincII GTYRAC 1 cut(s) 757
HindII GTYRAC 1 cut(s) 757
HindIII AAGCTT 1 cut(s) 390
HinfI GANTC 9 cut(s) 10, 85, 233, 253, 376, 702, 860, 932, 971
HpaII CCGG 1 cut(s) 1082
HphI GGTGA 4 cut(s) 38, 973, 980, 1049
Hpy166II GTNNAC 3 cut(s) 757, 766, 830
Hpy188I TCNGA 6 cut(s) 232, 252, 496, 658, 720, 1011
Hpy188III TCNNGA 5 cut(s) 80, 341, 599, 926, 1082
Hpy8I GTNNAC 3 cut(s) 757, 766, 830
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 5 cut(s) 169, 202, 266, 555, 995
HpyCH4III ACNGT 1 cut(s) 1152
HpyCH4IV ACGT 1 cut(s) 707
HpyCH4V TGCA 4 cut(s) 283, 362, 665, 689
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 273, 313
HpyF3I CTNAG 3 cut(s) 493, 657, 1010
HpySE526I ACGT 1 cut(s) 707
Hsp92II CATG 7 cut(s) 260, 416, 488, 607, 665, 837, 943
HspAI GCGC 2 cut(s) 22, 692
Kpn2I TCCGGA 1 cut(s) 1081
Ksp22I TGATCA 2 cut(s) 289, 540
Kzo9I GATC 6 cut(s) 208, 289, 540, 651, 1004, 1084
LguI GCTCTTC 2 cut(s) 777, 1021
Lsp1109I GCAGC 1 cut(s) 701
LweI GCATC 2 cut(s) 254, 648
MaeI CTAG 3 cut(s) 608, 750, 1044
MaeII ACGT 1 cut(s) 707
MaeIII GTNAC 1 cut(s) 711
MalI GATC 6 cut(s) 210, 291, 542, 653, 1006, 1086
MbiI CCGCTC 1 cut(s) 183
MboI GATC 6 cut(s) 208, 289, 540, 651, 1004, 1084
MfeI CAATTG 1 cut(s) 1121
MflI RGATCY 2 cut(s) 651, 1004
MhlI GDGCHC 2 cut(s) 789, 1016
MluCI AATT 8 cut(s) 163, 426, 568, 722, 896, 1049, 1121, 1126
MlyI GAGTC 3 cut(s) 4, 79, 262
MmeI TCCRAC 2 cut(s) 534, 977
Mph1103I ATGCAT 1 cut(s) 667
MroI TCCGGA 1 cut(s) 1081
MseI TTAA 2 cut(s) 591, 1104
MspCI CTTAAG 1 cut(s) 1103
MspI CCGG 1 cut(s) 1082
MspR9I CCNGG 2 cut(s) 40, 269
MunI CAATTG 1 cut(s) 1121
MvaI CCWGG 2 cut(s) 40, 269
MwoI GCNNNNNNNGC 3 cut(s) 131, 273, 313
NcoI CCATGG 2 cut(s) 412, 833
NdeI CATATG 1 cut(s) 449
NdeII GATC 6 cut(s) 208, 289, 540, 651, 1004, 1084
NheI GCTAGC 2 cut(s) 607, 1043
NlaIII CATG 7 cut(s) 260, 416, 488, 607, 665, 837, 943
NlaIV GGNNCC 2 cut(s) 205, 581
NmeAIII GCCGAG 1 cut(s) 130
NsiI ATGCAT 1 cut(s) 667
NspI RCATGY 3 cut(s) 488, 607, 665
PaeI GCATGC 1 cut(s) 665
PaeR7I CTCGAG 2 cut(s) 71, 788
PceI AGGCCT 1 cut(s) 43
PciI ACATGT 1 cut(s) 484
PciSI GCTCTTC 2 cut(s) 777, 1021
PcsI WCGNNNNNNNCGW 2 cut(s) 78, 144
PfeI GAWTC 6 cut(s) 233, 376, 702, 860, 932, 971
PkrI GCNGC 1 cut(s) 691
PleI GAGTC 3 cut(s) 4, 79, 261
PpsI GAGTC 3 cut(s) 4, 79, 261
PscI ACATGT 1 cut(s) 484
Psp124BI GAGCTC 2 cut(s) 789, 1016
Psp6I CCWGG 2 cut(s) 38, 267
PspGI CCWGG 2 cut(s) 38, 267
PspN4I GGNNCC 2 cut(s) 205, 581
PspPI GGNCC 2 cut(s) 203, 580
PspXI VCTCGAGB 2 cut(s) 71, 788
PsuI RGATCY 2 cut(s) 651, 1004
RsaI GTAC 1 cut(s) 1069
RsaNI GTAC 1 cut(s) 1068
SacI GAGCTC 2 cut(s) 789, 1016
SapI GCTCTTC 2 cut(s) 777, 1021
SaqAI TTAA 2 cut(s) 591, 1104
SatI GCNGC 1 cut(s) 690
Sau3AI GATC 6 cut(s) 208, 289, 540, 651, 1004, 1084
Sau96I GGNCC 2 cut(s) 203, 580
SchI GAGTC 3 cut(s) 4, 79, 262
ScrFI CCNGG 2 cut(s) 40, 269
SduI GDGCHC 2 cut(s) 789, 1016
SfaNI GCATC 2 cut(s) 254, 648
Sfr274I CTCGAG 2 cut(s) 71, 788
SinI GGWCC 1 cut(s) 580
SlaI CTCGAG 2 cut(s) 71, 788
SmlI CTYRAG 3 cut(s) 71, 788, 1103
SmoI CTYRAG 3 cut(s) 71, 788, 1103
SphI GCATGC 1 cut(s) 665
Sse9I AATT 8 cut(s) 163, 426, 568, 722, 896, 1049, 1121, 1126
SseBI AGGCCT 1 cut(s) 43
SsiI CCGC 5 cut(s) 115, 181, 307, 398, 937
SspMI CTAG 3 cut(s) 608, 750, 1044
SstI GAGCTC 2 cut(s) 789, 1016
StuI AGGCCT 1 cut(s) 43
StyD4I CCNGG 2 cut(s) 38, 267
StyI CCWWGG 3 cut(s) 99, 412, 833
TaaI ACNGT 1 cut(s) 1152
TaiI ACGT 1 cut(s) 710
TaqI TCGA 6 cut(s) 8, 72, 219, 746, 789, 925
TasI AATT 8 cut(s) 163, 426, 568, 722, 896, 1049, 1121, 1126
TfiI GAWTC 6 cut(s) 233, 376, 702, 860, 932, 971
Tru1I TTAA 2 cut(s) 591, 1104
Tru9I TTAA 2 cut(s) 591, 1104
TscAI CASTG 2 cut(s) 290, 550
TseI GCWGC 1 cut(s) 689
TspDTI ATGAA 1 cut(s) 821
TspGWI ACGGA 1 cut(s) 136
TspRI CASTG 2 cut(s) 290, 550
Vha464I CTTAAG 1 cut(s) 1103
VpaK11BI GGWCC 1 cut(s) 580
XapI RAATTY 3 cut(s) 568, 722, 1126
XceI RCATGY 3 cut(s) 488, 607, 665
XhoI CTCGAG 2 cut(s) 71, 788
XspI CTAG 3 cut(s) 608, 750, 1044
Zsp2I ATGCAT 1 cut(s) 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.