MD06G1040000.v1.1

Man1-Src1p-C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0011342
Physical Location & Seq
Reverse (-)
5183529 .. 5188556
5028 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1040000.v1.1.491

Sequence Viewer

Length: 1188 bp
ATGTCTTCTACTCCAAAGAAGCGCCTGAAACCCAAGCCCAAAGCCGAACCCCACTTTCAGTCTTCCCCTAATTCGATCGCATCGCTATTGGAACCATCCCAAAGTTTATTTCCCTCAAAGCACGACTTCCTTCGGCTCATAGCAGTCCTCGCCATCGCATCCTCCGTTGCTCTCACCTGCAATTTCTTGTCCTCCACTCTCACCGACCGCCACCGGAAGCCCTATTGCGATAGCTCCCCCGACTCTCTCGACTTCCTCCCCGATTCTTGTGAGCCTTGCCCAAGTAATGGACAGTGCTATGAAGGGAAATTGGATTGTCTTGAAGGATATAAAAAGCATGGCAAGTTATGCATAGAAGATGGAAGTATTTATGATACAGCTAAGAAACTTGCAGAAAGGGTAGAAATTCGTCTTTGTGAGGCGCTTGCTGAATTTTTGTGCTATGGAACTGGAACGATTTGGGTCCAAGAGAATGATATATGGAATGATTTAGTTAAGCAAGATCTGGTGGAACATGTTGGCTCAGACAATACTATTTATATGTATACGAAAGAAAGGACAATGGAGACTGTCAATAGAATGTTGGACATGAGGACAAATTCTCATGGGGTCAAAGAGTTGAAGTGCCCTGACATGCTAGCAGAGCATTACAAACCATTTTCCTGTCGCATCCGCCAATGGATCGCTGAGCGTGCATTACGTGTTTATTCAGTTTGTGCATTGCTTGTGGGATCGACATTCATTATTTGGAAACTCCAGCAAAGACGGCGTCTAGCAACTAGAGTTGATGAGCTTTACCAACAGGTTTGTGAGATACTTGAGGAGAAGGCCTTGATGTCAAAGAGTGTGAATGGTGAATGCGAACCATGGGTAGTTGCCTCTCGGTTGCGAGATCATCTACTTTTGCTAAAAGAGAGGAAGGACCCTATATTGTGGAAAAAGGTAGAAGAGTTGGTTCAGGAGGACTCTCACGTAGATCGTTATCCAATGTTGGTTAAGGGTGAATCGAAAGTAGTATGGGAATGGCAAGTTGAAGGTTCTTTGAGCTCTCTCAGAAGAATGAAAAAGAGGGAGTCTAGCACGTTGAAGGTGAGCAAAAGCATGGAAAGAAGTTCCGATCAGCATCTCCACTCACTCAAGAATGATGCTAAAGCACTGAATTTTGATACGGTGATGTTGGAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MSC

Protein Analysis

396

Amino Acids

45.46

Weight (kDa)

7.87

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MSC PF09402 84 - 342 2.8e-16 Man1-Src1p-C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46560
fragaria_vesca FvH4_5g21210 FvH4_5g21210 FvH4_5g21210 FvH4_5g21210
malus_domestica MD06G1040000.v1.1
prunus_persica Prupe.5G046100_v2.0.a1 Prupe.5G046100_v2.0.a1
pyrus_communis pycom06g03340
rosa_chinensis RchiOBHm_Chr7g0208351
rosa_laevigata RLG00000003220
rosa_multiflora Rmu_sc0006741.1_g000001 Rmu_ssc0000063.1_g000001
rosa_roxburghii Rroxscaffold_3G00250530
rosa_rugosa Rorug07G0103800
rosa_samantha Rh7AG238200 Rh7BG233700 Rh7CG253700 Rh7DG243900
rosa_wichuraiana Rw7G020300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 185
Acc36I ACCTGC 1 cut(s) 185
AccB7I CCANNNNNTGG 1 cut(s) 287
AccI GTMKAC 1 cut(s) 545
AciI CCGC 2 cut(s) 208, 673
AclWI GGATC 2 cut(s) 689, 739
AcsI RAATTY 4 cut(s) 405, 431, 598, 1159
AcyI GRCGYC 1 cut(s) 769
AfiI CCNNNNNNNGG 1 cut(s) 287
AflIII ACRYGT 2 cut(s) 514, 700
AgsI TTSAA 4 cut(s) 323, 622, 1034, 1087
AjuI GAANNNNNNNTTGG 2 cut(s) 93, 125
AluBI AGCT 4 cut(s) 234, 380, 793, 1047
AluI AGCT 4 cut(s) 234, 380, 793, 1047
Alw21I GWGCWC 1 cut(s) 1049
Alw26I GTCTC 1 cut(s) 560
AlwI GGATC 2 cut(s) 689, 739
AoxI GGCC 1 cut(s) 828
ApoI RAATTY 4 cut(s) 405, 431, 598, 1159
ArsI GACNNNNNNTTYG 2 cut(s) 754, 786
AspLEI GCGC 2 cut(s) 24, 424
AspS9I GGNCC 2 cut(s) 463, 922
AsuHPI GGTGA 6 cut(s) 166, 193, 866, 1013, 1102, 1183
AsuNHI GCTAGC 1 cut(s) 637
AvaII GGWCC 2 cut(s) 463, 922
BaeGI GKGCMC 1 cut(s) 629
BanII GRGCYC 1 cut(s) 1049
BbsI GAAGAC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 1049
BccI CCATC 3 cut(s) 103, 161, 353
BceAI ACGGC 1 cut(s) 782
BcoDI GTCTC 1 cut(s) 560
BfaI CTAG 4 cut(s) 638, 773, 780, 1077
BfoI RGCGCY 2 cut(s) 25, 425
BfuAI ACCTGC 1 cut(s) 185
BglII AGATCT 1 cut(s) 502
BlpI GCTNAGC 1 cut(s) 687
Bme18I GGWCC 2 cut(s) 463, 922
BmgT120I GGNCC 2 cut(s) 463, 922
BmiI GGNNCC 3 cut(s) 93, 464, 924
BmsI GCATC 5 cut(s) 89, 167, 678, 1132, 1135
BmtI GCTAGC 1 cut(s) 641
BpiI GAAGAC 1 cut(s) 54
BpmI CTGGAG 1 cut(s) 740
Bpu1102I GCTNAGC 1 cut(s) 687
BpuEI CTTGAG 2 cut(s) 839, 1121
BsaAI YACGTR 2 cut(s) 701, 973
BsaBI GATNNNNATC 2 cut(s) 981, 1122
BsaHI GRCGYC 1 cut(s) 769
BsaJI CCNNGG 1 cut(s) 866
BsaWI WCCGGW 1 cut(s) 213
Bsc4I CCNNNNNNNGG 1 cut(s) 287
Bse1I ACTGG 1 cut(s) 454
Bse3DI GCAATG 1 cut(s) 719
Bse8I GATNNNNATC 2 cut(s) 981, 1122
BseDI CCNNGG 1 cut(s) 866
BseGI GGATG 3 cut(s) 95, 158, 669
BseJI GATNNNNATC 2 cut(s) 981, 1122
BseLI CCNNNNNNNGG 1 cut(s) 287
BseMI GCAATG 1 cut(s) 719
BseMII CTCAG 3 cut(s) 537, 678, 1066
BseNI ACTGG 1 cut(s) 454
BseRI GAGGAG 1 cut(s) 836
BseSI GKGCMC 1 cut(s) 629
Bsh1285I CGRYCG 2 cut(s) 78, 208
BshFI GGCC 1 cut(s) 830
BsiEI CGRYCG 2 cut(s) 78, 208
BsiHKAI GWGCWC 1 cut(s) 1049
BsiSI CCGG 1 cut(s) 214
BslI CCNNNNNNNGG 1 cut(s) 287
BsmAI GTCTC 1 cut(s) 560
BsmI GAATGC 1 cut(s) 863
BsnI GGCC 1 cut(s) 830
Bsp1286I GDGCHC 2 cut(s) 629, 1049
Bsp143I GATC 7 cut(s) 75, 502, 681, 731, 892, 976, 1117
Bsp1720I GCTNAGC 1 cut(s) 687
Bsp19I CCATGG 1 cut(s) 866
BspACI CCGC 2 cut(s) 208, 673
BspANI GGCC 1 cut(s) 830
BspCNI CTCAG 3 cut(s) 536, 679, 1065
BspLI GGNNCC 3 cut(s) 93, 464, 924
BspMI ACCTGC 1 cut(s) 185
BspOI GCTAGC 1 cut(s) 641
BspPI GGATC 2 cut(s) 689, 739
BsrDI GCAATG 1 cut(s) 719
BsrI ACTGG 1 cut(s) 454
BssECI CCNNGG 1 cut(s) 866
BssMI GATC 7 cut(s) 75, 502, 681, 731, 892, 976, 1117
BssNAI GTATAC 1 cut(s) 546
BssNI GRCGYC 1 cut(s) 769
BssT1I CCWWGG 1 cut(s) 866
Bst1107I GTATAC 1 cut(s) 546
Bst4CI ACNGT 3 cut(s) 294, 571, 1171
Bst6I CTCTTC 1 cut(s) 942
BstACI GRCGYC 1 cut(s) 769
BstAPI GCANNNNNTGC 1 cut(s) 348
BstBAI YACGTR 2 cut(s) 701, 973
BstC8I GCNNGC 3 cut(s) 426, 639, 693
BstDEI CTNAG 4 cut(s) 381, 523, 687, 1052
BstDSI CCRYGG 1 cut(s) 866
BstF5I GGATG 3 cut(s) 95, 158, 669
BstH2I RGCGCY 2 cut(s) 25, 425
BstHHI GCGC 2 cut(s) 24, 424
BstKTI GATC 7 cut(s) 78, 505, 684, 734, 895, 979, 1120
BstMAI GTCTC 1 cut(s) 560
BstMBI GATC 7 cut(s) 75, 502, 681, 731, 892, 976, 1117
BstMCI CGRYCG 2 cut(s) 78, 208
BstMWI GCNNNNNNNGC 5 cut(s) 149, 348, 643, 692, 766
BstNSI RCATGY 2 cut(s) 518, 637
BstSLI GKGCMC 1 cut(s) 629
BstV2I GAAGAC 1 cut(s) 54
BstX2I RGATCY 1 cut(s) 502
BstYI RGATCY 1 cut(s) 502
BstZ17I GTATAC 1 cut(s) 546
BsuRI GGCC 1 cut(s) 830
BtgI CCRYGG 1 cut(s) 866
BtgZI GCGATG 2 cut(s) 66, 139
BtsCI GGATG 3 cut(s) 95, 158, 669
BtsIMutI CAGTG 2 cut(s) 299, 1154
BveI ACCTGC 1 cut(s) 185
Cac8I GCNNGC 3 cut(s) 426, 639, 693
CfoI GCGC 2 cut(s) 24, 424
Cfr13I GGNCC 2 cut(s) 463, 922
CseI GACGC 1 cut(s) 758
CviAII CATG 7 cut(s) 338, 515, 589, 605, 634, 867, 1102
DdeI CTNAG 4 cut(s) 381, 523, 687, 1052
DpnI GATC 7 cut(s) 77, 504, 683, 733, 894, 978, 1119
DpnII GATC 7 cut(s) 75, 502, 681, 731, 892, 976, 1117
Eam1104I CTCTTC 1 cut(s) 942
EarI CTCTTC 1 cut(s) 942
EciI GGCGGA 1 cut(s) 662
Ecl136II GAGCTC 1 cut(s) 1047
Eco130I CCWWGG 1 cut(s) 866
Eco147I AGGCCT 1 cut(s) 830
Eco24I GRGCYC 1 cut(s) 1049
Eco47I GGWCC 2 cut(s) 463, 922
Eco53kI GAGCTC 1 cut(s) 1047
EcoICRI GAGCTC 1 cut(s) 1047
EcoO109I RGGNCCY 1 cut(s) 922
EcoT14I CCWWGG 1 cut(s) 866
EcoT22I ATGCAT 1 cut(s) 353
EcoT38I GRGCYC 1 cut(s) 1049
ErhI CCWWGG 1 cut(s) 866
FaeI CATG 7 cut(s) 341, 518, 592, 608, 637, 870, 1105
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FatI CATG 7 cut(s) 337, 514, 588, 604, 633, 866, 1101
FblI GTMKAC 1 cut(s) 545
FokI GGATG 3 cut(s) 82, 145, 656
FriOI GRGCYC 1 cut(s) 1049
FspBI CTAG 4 cut(s) 638, 773, 780, 1077
GlaI GCGC 2 cut(s) 23, 423
GsuI CTGGAG 1 cut(s) 740
HaeII RGCGCY 2 cut(s) 25, 425
HaeIII GGCC 1 cut(s) 830
HapII CCGG 1 cut(s) 214
HgaI GACGC 1 cut(s) 758
HhaI GCGC 2 cut(s) 24, 424
Hin1I GRCGYC 1 cut(s) 769
Hin1II CATG 7 cut(s) 341, 518, 592, 608, 637, 870, 1105
Hin6I GCGC 2 cut(s) 22, 422
HinP1I GCGC 2 cut(s) 22, 422
HinfI GANTC 5 cut(s) 242, 263, 965, 1004, 1073
HpaII CCGG 1 cut(s) 214
HphI GGTGA 6 cut(s) 166, 193, 866, 1013, 1102, 1183
Hpy166II GTNNAC 1 cut(s) 546
Hpy188I TCNGA 3 cut(s) 526, 1055, 1117
Hpy188III TCNNGA 4 cut(s) 248, 320, 959, 1138
Hpy8I GTNNAC 1 cut(s) 546
HpyAV CCTTC 7 cut(s) 140, 296, 317, 820, 913, 1028, 1081
HpyCH4III ACNGT 3 cut(s) 294, 571, 1171
HpyCH4IV ACGT 3 cut(s) 700, 972, 1082
HpyCH4V TGCA 5 cut(s) 180, 351, 392, 695, 719
HpyF10VI GCNNNNNNNGC 5 cut(s) 149, 348, 643, 692, 766
HpyF3I CTNAG 4 cut(s) 381, 523, 687, 1052
HpySE526I ACGT 3 cut(s) 700, 972, 1082
Hsp92I GRCGYC 1 cut(s) 769
Hsp92II CATG 7 cut(s) 341, 518, 592, 608, 637, 870, 1105
HspAI GCGC 2 cut(s) 22, 422
Kzo9I GATC 7 cut(s) 75, 502, 681, 731, 892, 976, 1117
LmnI GCTCC 2 cut(s) 239, 1180
LweI GCATC 5 cut(s) 89, 167, 678, 1132, 1135
MaeI CTAG 4 cut(s) 638, 773, 780, 1077
MaeII ACGT 3 cut(s) 700, 972, 1082
MalI GATC 7 cut(s) 77, 504, 683, 733, 894, 978, 1119
MboI GATC 7 cut(s) 75, 502, 681, 731, 892, 976, 1117
MboII GAAGA 4 cut(s) 54, 368, 959, 1068
MflI RGATCY 1 cut(s) 502
MhlI GDGCHC 2 cut(s) 629, 1049
MluCI AATT 7 cut(s) 70, 181, 308, 405, 431, 598, 1159
MlyI GAGTC 3 cut(s) 236, 959, 1082
MmeI TCCRAC 2 cut(s) 564, 1158
Mph1103I ATGCAT 1 cut(s) 353
MseI TTAA 2 cut(s) 495, 996
MspI CCGG 1 cut(s) 214
Mva1269I GAATGC 1 cut(s) 863
MwoI GCNNNNNNNGC 5 cut(s) 149, 348, 643, 692, 766
NcoI CCATGG 1 cut(s) 866
NdeII GATC 7 cut(s) 75, 502, 681, 731, 892, 976, 1117
NheI GCTAGC 1 cut(s) 637
NlaIII CATG 7 cut(s) 341, 518, 592, 608, 637, 870, 1105
NlaIV GGNNCC 3 cut(s) 93, 464, 924
NsiI ATGCAT 1 cut(s) 353
NspI RCATGY 2 cut(s) 518, 637
PaqCI CACCTGC 1 cut(s) 185
PceI AGGCCT 1 cut(s) 830
PciI ACATGT 1 cut(s) 514
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PctI GAATGC 1 cut(s) 863
PfeI GAWTC 2 cut(s) 263, 1004
PflFI GACNNNGTC 1 cut(s) 768
PflMI CCANNNNNTGG 1 cut(s) 287
Ple19I CGATCG 1 cut(s) 78
PleI GAGTC 3 cut(s) 236, 959, 1081
PpsI GAGTC 3 cut(s) 236, 959, 1081
Ppu21I YACGTR 2 cut(s) 701, 973
PpuMI RGGWCCY 1 cut(s) 922
PscI ACATGT 1 cut(s) 514
Psp124BI GAGCTC 1 cut(s) 1049
Psp5II RGGWCCY 1 cut(s) 922
PspN4I GGNNCC 3 cut(s) 93, 464, 924
PspPI GGNCC 2 cut(s) 463, 922
PspPPI RGGWCCY 1 cut(s) 922
PsuI RGATCY 1 cut(s) 502
PsyI GACNNNGTC 1 cut(s) 768
PvuI CGATCG 1 cut(s) 78
SacI GAGCTC 1 cut(s) 1049
SaqAI TTAA 2 cut(s) 495, 996
Sau3AI GATC 7 cut(s) 75, 502, 681, 731, 892, 976, 1117
Sau96I GGNCC 2 cut(s) 463, 922
SchI GAGTC 3 cut(s) 236, 959, 1082
SduI GDGCHC 2 cut(s) 629, 1049
SfaNI GCATC 5 cut(s) 89, 167, 678, 1132, 1135
SinI GGWCC 2 cut(s) 463, 922
SmlI CTYRAG 2 cut(s) 818, 1136
SmoI CTYRAG 2 cut(s) 818, 1136
Sse9I AATT 7 cut(s) 70, 181, 308, 405, 431, 598, 1159
SseBI AGGCCT 1 cut(s) 830
SsiI CCGC 2 cut(s) 208, 673
SspMI CTAG 4 cut(s) 638, 773, 780, 1077
SstI GAGCTC 1 cut(s) 1049
StuI AGGCCT 1 cut(s) 830
StyI CCWWGG 1 cut(s) 866
TaaI ACNGT 3 cut(s) 294, 571, 1171
TaiI ACGT 3 cut(s) 703, 975, 1085
TaqI TCGA 4 cut(s) 74, 249, 734, 1007
TasI AATT 7 cut(s) 70, 181, 308, 405, 431, 598, 1159
TfiI GAWTC 2 cut(s) 263, 1004
Tru1I TTAA 2 cut(s) 495, 996
Tru9I TTAA 2 cut(s) 495, 996
TscAI CASTG 2 cut(s) 299, 1161
TspDTI ATGAA 3 cut(s) 315, 730, 1076
TspGWI ACGGA 1 cut(s) 154
TspRI CASTG 2 cut(s) 299, 1161
Tth111I GACNNNGTC 1 cut(s) 768
Van91I CCANNNNNTGG 1 cut(s) 287
VpaK11BI GGWCC 2 cut(s) 463, 922
XapI RAATTY 4 cut(s) 405, 431, 598, 1159
XceI RCATGY 2 cut(s) 518, 637
XmiI GTMKAC 1 cut(s) 545
XspI CTAG 4 cut(s) 638, 773, 780, 1077
Zsp2I ATGCAT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.