Rorug07G0103800

Man1-Src1p-C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0011342
Physical Location & Seq
Forward (+)
8172609 .. 8173009
401 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0103800.1

Sequence Viewer

Length: 363 bp
ATGGAGAGCTTCAGCTTCTTCTTGTCCCTTAAACTTGCCCCGTTATCGGTTTTCTTATTGAATTTAACAGCAGTTCATAGTCACATTAAGCATGGAGGTGATGGGGTACAGCCACTGTCCAAGATTCAAATCCACAGAGCTGTTTACGAGCTTCATGAAAATGCTTCTGTCACGGCAAACCCAGTCCTTCTTGGCACCAAGCCTCGTTCTTTTTGTCATGAAGAACAAGGGCTGCAGGGGGAAGATTCTCAATGGGTAACAGTGGAAGTTGGCACTCCTCAGCTTTCTGAAGATGATTGGTTGGCAGTCTTTTCTCCTGCAAATTTCAAGTATGTCCATCTAAATTACTCTTCTGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MSC

Protein Analysis

120

Amino Acids

13.38

Weight (kDa)

5.37

Isoelectric Point (pI)

39.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
fn3_PAP PF17808 76 - 113 2.6e-08 Fn3-like domain from Purple Acid Phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46560
fragaria_vesca FvH4_5g21210 FvH4_5g21210 FvH4_5g21210 FvH4_5g21210
malus_domestica MD06G1040000.v1.1
prunus_persica Prupe.5G046100_v2.0.a1 Prupe.5G046100_v2.0.a1
pyrus_communis pycom06g03340
rosa_chinensis RchiOBHm_Chr7g0208351
rosa_laevigata RLG00000003220
rosa_multiflora Rmu_sc0006741.1_g000001 Rmu_ssc0000063.1_g000001
rosa_roxburghii Rroxscaffold_3G00250530
rosa_rugosa Rorug07G0103800
rosa_samantha Rh7AG238200 Rh7BG233700 Rh7CG253700 Rh7DG243900
rosa_wichuraiana Rw7G020300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 194
AcsI RAATTY 2 cut(s) 61, 322
AcuI CTGAAG 1 cut(s) 309
AfaI GTAC 1 cut(s) 108
AfiI CCNNNNNNNGG 1 cut(s) 46
AgsI TTSAA 3 cut(s) 61, 128, 328
AluBI AGCT 5 cut(s) 9, 15, 140, 151, 283
AluI AGCT 5 cut(s) 9, 15, 140, 151, 283
AlwNI CAGNNNCTG 1 cut(s) 115
ApeKI GCWGC 1 cut(s) 232
ApoI RAATTY 2 cut(s) 61, 322
AsuHPI GGTGA 1 cut(s) 110
BanI GGYRCC 1 cut(s) 194
BbvCI CCTCAGC 1 cut(s) 279
BbvI GCAGC 1 cut(s) 219
BccI CCATC 2 cut(s) 95, 345
BceAI ACGGC 1 cut(s) 189
BfmI CTRYAG 1 cut(s) 233
BisI GCNGC 1 cut(s) 233
BlsI GCNGC 1 cut(s) 234
BmiI GGNNCC 1 cut(s) 196
BmrI ACTGGG 1 cut(s) 176
BmuI ACTGGG 1 cut(s) 176
Bpu10I CCTNAGC 1 cut(s) 279
BsaBI GATNNNNATC 1 cut(s) 128
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse1I ACTGG 1 cut(s) 182
Bse8I GATNNNNATC 1 cut(s) 128
BseJI GATNNNNATC 1 cut(s) 128
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMII CTCAG 1 cut(s) 293
BseNI ACTGG 1 cut(s) 182
BseRI GAGGAG 1 cut(s) 267
BseXI GCAGC 1 cut(s) 219
BshNI GGYRCC 1 cut(s) 194
BslFI GGGAC 1 cut(s) 10
BslI CCNNNNNNNGG 1 cut(s) 46
BsmFI GGGAC 1 cut(s) 10
BspCNI CTCAG 1 cut(s) 292
BspHI TCATGA 2 cut(s) 154, 217
BspLI GGNNCC 1 cut(s) 196
BspMAI CTGCAG 1 cut(s) 237
BspT107I GGYRCC 1 cut(s) 194
BsrI ACTGG 1 cut(s) 182
Bst4CI ACNGT 2 cut(s) 117, 262
Bst6I CTCTTC 1 cut(s) 355
BstDEI CTNAG 1 cut(s) 279
BstSFI CTRYAG 1 cut(s) 233
BstV1I GCAGC 1 cut(s) 219
BtsIMutI CAGTG 2 cut(s) 113, 267
CaiI CAGNNNCTG 1 cut(s) 115
CciI TCATGA 2 cut(s) 154, 217
Csp6I GTAC 1 cut(s) 107
CviAII CATG 3 cut(s) 92, 155, 218
CviJI RGCY 8 cut(s) 9, 15, 112, 140, 151, 202, 232, 283
CviKI_1 RGCY 8 cut(s) 9, 15, 112, 140, 151, 202, 232, 283
CviQI GTAC 1 cut(s) 107
DdeI CTNAG 1 cut(s) 279
Eam1104I CTCTTC 1 cut(s) 355
EarI CTCTTC 1 cut(s) 355
Eco57I CTGAAG 1 cut(s) 309
FaeI CATG 3 cut(s) 95, 158, 221
FaiI YATR 5 cut(s) 78, 93, 156, 219, 333
FaqI GGGAC 1 cut(s) 10
FatI CATG 3 cut(s) 91, 154, 217
Fnu4HI GCNGC 1 cut(s) 233
Fsp4HI GCNGC 1 cut(s) 233
GluI GCNGC 1 cut(s) 233
Hin1II CATG 3 cut(s) 95, 158, 221
HinfI GANTC 2 cut(s) 124, 245
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 2 cut(s) 289, 355
Hpy188III TCNNGA 2 cut(s) 155, 218
Hpy8I GTNNAC 1 cut(s) 145
HpyAV CCTTC 1 cut(s) 197
HpyCH4III ACNGT 2 cut(s) 117, 262
HpyCH4V TGCA 2 cut(s) 235, 320
HpyF3I CTNAG 1 cut(s) 279
Hsp92II CATG 3 cut(s) 95, 158, 221
LpnPI CCDG 3 cut(s) 195, 221, 330
Lsp1109I GCAGC 1 cut(s) 219
MaeIII GTNAC 3 cut(s) 80, 169, 256
MboII GAAGA 5 cut(s) 10, 233, 254, 302, 342
MluCI AATT 3 cut(s) 61, 322, 343
MnlI CCTC 3 cut(s) 89, 213, 288
MseI TTAA 3 cut(s) 30, 65, 87
MslI CAYNNNNRTG 2 cut(s) 96, 159
NlaIII CATG 3 cut(s) 95, 158, 221
NlaIV GGNNCC 1 cut(s) 196
NmuCI GTSAC 2 cut(s) 80, 169
PagI TCATGA 2 cut(s) 154, 217
PfeI GAWTC 2 cut(s) 124, 245
PkrI GCNGC 1 cut(s) 234
PspN4I GGNNCC 1 cut(s) 196
PstI CTGCAG 1 cut(s) 237
PstNI CAGNNNCTG 1 cut(s) 115
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
RseI CAYNNNNRTG 2 cut(s) 96, 159
SaqAI TTAA 3 cut(s) 30, 65, 87
SatI GCNGC 1 cut(s) 233
SetI ASST 6 cut(s) 11, 17, 100, 142, 153, 285
SfcI CTRYAG 1 cut(s) 233
SmiMI CAYNNNNRTG 2 cut(s) 96, 159
Sse9I AATT 3 cut(s) 61, 322, 343
TaaI ACNGT 2 cut(s) 117, 262
TasI AATT 3 cut(s) 61, 322, 343
TfiI GAWTC 2 cut(s) 124, 245
Tru1I TTAA 3 cut(s) 30, 65, 87
Tru9I TTAA 3 cut(s) 30, 65, 87
TscAI CASTG 2 cut(s) 120, 267
TseFI GTSAC 2 cut(s) 80, 169
TseI GCWGC 1 cut(s) 232
Tsp45I GTSAC 2 cut(s) 80, 169
TspDTI ATGAA 4 cut(s) 65, 143, 171, 234
TspRI CASTG 2 cut(s) 120, 267
XapI RAATTY 2 cut(s) 61, 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.