FvH4_5g22141

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0017308
Physical Location & Seq
Forward (+)
13473776 .. 13474862
1087 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g22141.t1

Sequence Viewer

Length: 744 bp
ATGGTGGTTTTCTTCAAAGGAGGAGCTAATAACCAATTACCATTGGGAAGATCGATGAGTTTGAGGACAAATAGTGCATTGCTAGACGATCTCCTCTTGCAAGAGTCACCGGGTTCGATAAACACAGCTAGACATGTGATCATCGTCATGGACGCCATGAAAGAGTTCAACACTGCGCCACTAGAGTGGGCACTTGAGCATGTCATCAAGGCTGGCTCGGTTGTTATTCTTCTCGGTGTGATGCCGTGGCTCAATATTCCTCTGTCTTCAAAGACATGGCTTGATGTTTGGCCAGTGGGTTTAGAGGAACTATCAATTGTCAAAGAAAAACCTGAGTGGAAGAGCGATGTCAAATATCTGAAGCTCCAAGCAGCAGTGGACCTCTGTAGAAACTATGGGGTTGTGCTTCAGAAGAAGGTTGTCATGGGTTTTCCCTCAAGACTGTTGGTTGTTGACGAAATTACAAGCCTGCATGCTACATGGGTCGTCTTTGATAGGCATCAAAAGGCTGACCGAAAGTTCTACGCTGAGAAACTCCCATGCAACATGGTGATCATGAATGAAGAAGGGGACGCTGACATGATCAAAGGAAGGACTATGATAGATAGCACTGTTGCAGAGTCAACAACTTCTCTGTTATCTACTCCACTTTTCATGATCGCTGATCATGTTAAGGGAATGCTGAACAAATCGAAAAGTGCTCGAAAAGACCGCTCTAGATCGCAATCGCAAGGCGATGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

248

Amino Acids

27.63

Weight (kDa)

8.45

Isoelectric Point (pI)

37.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g22141
malus_domestica MD06G1034800.v1.1 MD16G1273800.v1.1
prunus_persica Prupe.5G035100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0209801
rosa_laevigata RLG00000003089
rosa_roxburghii Rroxscaffold_3G00248960
rosa_rugosa Rorug07G0116300
rosa_samantha Rh7AG250300 Rh7BG244200 Rh7CG266200 Rh7DG255900
rosa_wichuraiana Rw7G021200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 714
AciI CCGC 1 cut(s) 712
AcoI YGGCCR 1 cut(s) 290
AcuI CTGAAG 2 cut(s) 380, 392
AcyI GRCGYC 1 cut(s) 153
AflIII ACRYGT 1 cut(s) 133
AgsI TTSAA 3 cut(s) 16, 169, 270
AleI CACNNNNGTG 1 cut(s) 184
AluBI AGCT 3 cut(s) 26, 128, 364
AluI AGCT 3 cut(s) 26, 128, 364
Alw21I GWGCWC 1 cut(s) 703
AoxI GGCC 1 cut(s) 290
ApeKI GCWGC 1 cut(s) 371
Asp700I GAANNNNTTC 1 cut(s) 164
AspLEI GCGC 1 cut(s) 178
AspS9I GGNCC 1 cut(s) 379
AsuC2I CCSGG 1 cut(s) 111
AsuHPI GGTGA 2 cut(s) 99, 562
AvaII GGWCC 1 cut(s) 379
BaeGI GKGCMC 1 cut(s) 193
BalI TGGCCA 1 cut(s) 292
BbsI GAAGAC 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 703
BbvI GCAGC 1 cut(s) 383
BceAI ACGGC 1 cut(s) 229
BclI TGATCA 4 cut(s) 138, 552, 582, 664
BcnI CCSGG 1 cut(s) 111
BfaI CTAG 5 cut(s) 83, 129, 182, 717, 742
BfmI CTRYAG 1 cut(s) 385
BisI GCNGC 1 cut(s) 372
BlsI GCNGC 1 cut(s) 373
Bme1390I CCNGG 1 cut(s) 111
Bme18I GGWCC 1 cut(s) 379
BmgT120I GGNCC 1 cut(s) 379
BmrFI CCNGG 1 cut(s) 111
BmsI GCATC 2 cut(s) 231, 508
BpiI GAAGAC 1 cut(s) 258
BpuEI CTTGAG 2 cut(s) 215, 421
BpuMI CCSGG 1 cut(s) 111
Bsa29I ATCGAT 1 cut(s) 53
BsaBI GATNNNNATC 2 cut(s) 498, 724
BsaHI GRCGYC 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 245
Bse1I ACTGG 1 cut(s) 293
Bse3DI GCAATG 1 cut(s) 77
Bse8I GATNNNNATC 2 cut(s) 498, 724
BseCI ATCGAT 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 245
BseJI GATNNNNATC 2 cut(s) 498, 724
BseMI GCAATG 1 cut(s) 77
BseMII CTCAG 2 cut(s) 324, 519
BseNI ACTGG 1 cut(s) 293
BseRI GAGGAG 2 cut(s) 36, 83
BseSI GKGCMC 1 cut(s) 193
BseXI GCAGC 1 cut(s) 383
BshFI GGCC 1 cut(s) 292
BshVI ATCGAT 1 cut(s) 53
BsiHKAI GWGCWC 1 cut(s) 703
BsiSI CCGG 1 cut(s) 110
BslFI GGGAC 1 cut(s) 584
BsmFI GGGAC 1 cut(s) 584
BsmI GAATGC 1 cut(s) 684
BsnI GGCC 1 cut(s) 292
Bsp1286I GDGCHC 2 cut(s) 193, 703
Bsp143I GATC 8 cut(s) 50, 88, 138, 552, 582, 657, 664, 719
BspACI CCGC 1 cut(s) 712
BspANI GGCC 1 cut(s) 292
BspCNI CTCAG 2 cut(s) 325, 520
BspDI ATCGAT 1 cut(s) 53
BspHI TCATGA 2 cut(s) 555, 654
BspQI GCTCTTC 1 cut(s) 335
BsrBI CCGCTC 1 cut(s) 714
BsrDI GCAATG 1 cut(s) 77
BsrI ACTGG 1 cut(s) 293
BssECI CCNNGG 1 cut(s) 245
BssMI GATC 8 cut(s) 50, 88, 138, 552, 582, 657, 664, 719
BssNI GRCGYC 1 cut(s) 153
Bst4CI ACNGT 2 cut(s) 444, 613
Bst6I CTCTTC 1 cut(s) 335
BstACI GRCGYC 1 cut(s) 153
BstC8I GCNNGC 3 cut(s) 214, 470, 474
BstDEI CTNAG 2 cut(s) 333, 528
BstDSI CCRYGG 1 cut(s) 245
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 8 cut(s) 53, 91, 141, 555, 585, 660, 667, 722
BstMBI GATC 8 cut(s) 50, 88, 138, 552, 582, 657, 664, 719
BstNSI RCATGY 3 cut(s) 137, 203, 476
BstSCI CCNGG 1 cut(s) 109
BstSFI CTRYAG 1 cut(s) 385
BstSLI GKGCMC 1 cut(s) 193
BstV1I GCAGC 1 cut(s) 383
BstV2I GAAGAC 1 cut(s) 258
BstXI CCANNNNNNTGG 1 cut(s) 186
Bsu15I ATCGAT 1 cut(s) 53
BsuRI GGCC 1 cut(s) 292
BsuTUI ATCGAT 1 cut(s) 53
BtgI CCRYGG 1 cut(s) 245
BtgZI GCGATG 1 cut(s) 360
BtsI GCAGTG 2 cut(s) 171, 381
BtsIMutI CAGTG 4 cut(s) 171, 300, 381, 609
Cac8I GCNNGC 3 cut(s) 214, 470, 474
CciI TCATGA 2 cut(s) 555, 654
CfoI GCGC 1 cut(s) 178
Cfr13I GGNCC 1 cut(s) 379
ClaI ATCGAT 1 cut(s) 53
CseI GACGC 2 cut(s) 161, 581
DdeI CTNAG 2 cut(s) 333, 528
DpnI GATC 8 cut(s) 52, 90, 140, 554, 584, 659, 666, 721
DpnII GATC 8 cut(s) 50, 88, 138, 552, 582, 657, 664, 719
EaeI YGGCCR 1 cut(s) 290
Eam1104I CTCTTC 1 cut(s) 335
EarI CTCTTC 1 cut(s) 335
Eco47I GGWCC 1 cut(s) 379
Eco57I CTGAAG 2 cut(s) 380, 392
FaqI GGGAC 1 cut(s) 584
FbaI TGATCA 4 cut(s) 138, 552, 582, 664
Fnu4HI GCNGC 1 cut(s) 372
Fsp4HI GCNGC 1 cut(s) 372
FspBI CTAG 5 cut(s) 83, 129, 182, 717, 742
GlaI GCGC 1 cut(s) 177
GluI GCNGC 1 cut(s) 372
HaeIII GGCC 1 cut(s) 292
HapII CCGG 1 cut(s) 110
HgaI GACGC 2 cut(s) 161, 581
HhaI GCGC 1 cut(s) 178
Hin1I GRCGYC 1 cut(s) 153
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HincII GTYRAC 2 cut(s) 454, 624
HindII GTYRAC 2 cut(s) 454, 624
HinfI GANTC 2 cut(s) 104, 620
HpaII CCGG 1 cut(s) 110
HphI GGTGA 2 cut(s) 99, 562
Hpy166II GTNNAC 3 cut(s) 379, 454, 624
Hpy188I TCNGA 2 cut(s) 360, 411
Hpy188III TCNNGA 4 cut(s) 438, 556, 655, 717
Hpy8I GTNNAC 3 cut(s) 379, 454, 624
HpyAV CCTTC 3 cut(s) 409, 560, 585
HpyCH4III ACNGT 2 cut(s) 444, 613
HpyCH4V TGCA 5 cut(s) 77, 100, 472, 543, 617
HpyF3I CTNAG 2 cut(s) 333, 528
Hsp92I GRCGYC 1 cut(s) 153
HspAI GCGC 1 cut(s) 176
Ksp22I TGATCA 4 cut(s) 138, 552, 582, 664
Kzo9I GATC 8 cut(s) 50, 88, 138, 552, 582, 657, 664, 719
LguI GCTCTTC 1 cut(s) 335
LmnI GCTCC 2 cut(s) 23, 369
LpnPI CCDG 5 cut(s) 123, 198, 306, 345, 482
Lsp1109I GCAGC 1 cut(s) 383
LweI GCATC 2 cut(s) 231, 508
MaeI CTAG 5 cut(s) 83, 129, 182, 717, 742
MaeIII GTNAC 1 cut(s) 105
MalI GATC 8 cut(s) 52, 90, 140, 554, 584, 659, 666, 721
MbiI CCGCTC 1 cut(s) 714
MboI GATC 8 cut(s) 50, 88, 138, 552, 582, 657, 664, 719
MboII GAAGA 7 cut(s) 4, 60, 221, 258, 352, 424, 575
MfeI CAATTG 1 cut(s) 315
MhlI GDGCHC 2 cut(s) 193, 703
MlsI TGGCCA 1 cut(s) 292
MluCI AATT 3 cut(s) 35, 315, 459
MluNI TGGCCA 1 cut(s) 292
MlyI GAGTC 2 cut(s) 113, 629
MnlI CCTC 7 cut(s) 14, 57, 104, 270, 298, 392, 445
Mox20I TGGCCA 1 cut(s) 292
MroXI GAANNNNTTC 1 cut(s) 164
MscI TGGCCA 1 cut(s) 292
MseI TTAA 1 cut(s) 672
MslI CAYNNNNRTG 2 cut(s) 146, 184
Msp20I TGGCCA 1 cut(s) 292
MspI CCGG 1 cut(s) 110
MspR9I CCNGG 1 cut(s) 111
MunI CAATTG 1 cut(s) 315
Mva1269I GAATGC 1 cut(s) 684
NciI CCSGG 1 cut(s) 111
NdeII GATC 8 cut(s) 50, 88, 138, 552, 582, 657, 664, 719
NmuCI GTSAC 1 cut(s) 105
NspI RCATGY 3 cut(s) 137, 203, 476
OliI CACNNNNGTG 1 cut(s) 184
PaeI GCATGC 1 cut(s) 476
PagI TCATGA 2 cut(s) 555, 654
PciI ACATGT 1 cut(s) 133
PciSI GCTCTTC 1 cut(s) 335
PctI GAATGC 1 cut(s) 684
PdmI GAANNNNTTC 1 cut(s) 164
PkrI GCNGC 1 cut(s) 373
PleI GAGTC 2 cut(s) 112, 628
PpsI GAGTC 2 cut(s) 112, 628
PscI ACATGT 1 cut(s) 133
PspPI GGNCC 1 cut(s) 379
RseI CAYNNNNRTG 2 cut(s) 146, 184
SapI GCTCTTC 1 cut(s) 335
SaqAI TTAA 1 cut(s) 672
SatI GCNGC 1 cut(s) 372
Sau3AI GATC 8 cut(s) 50, 88, 138, 552, 582, 657, 664, 719
Sau96I GGNCC 1 cut(s) 379
SchI GAGTC 2 cut(s) 113, 629
ScrFI CCNGG 1 cut(s) 111
SduI GDGCHC 2 cut(s) 193, 703
SetI ASST 6 cut(s) 28, 130, 334, 366, 384, 420
SfaNI GCATC 2 cut(s) 231, 508
SfcI CTRYAG 1 cut(s) 385
SinI GGWCC 1 cut(s) 379
SmiMI CAYNNNNRTG 2 cut(s) 146, 184
SmlI CTYRAG 2 cut(s) 194, 436
SmoI CTYRAG 2 cut(s) 194, 436
SphI GCATGC 1 cut(s) 476
Sse9I AATT 3 cut(s) 35, 315, 459
SsiI CCGC 1 cut(s) 712
SspI AATATT 1 cut(s) 256
SspMI CTAG 5 cut(s) 83, 129, 182, 717, 742
StyD4I CCNGG 1 cut(s) 109
TaaI ACNGT 2 cut(s) 444, 613
TaqI TCGA 4 cut(s) 53, 116, 692, 703
TaqII GACCGA 1 cut(s) 528
TasI AATT 3 cut(s) 35, 315, 459
Tru1I TTAA 1 cut(s) 672
Tru9I TTAA 1 cut(s) 672
TscAI CASTG 4 cut(s) 178, 300, 381, 616
TseFI GTSAC 1 cut(s) 105
TseI GCWGC 1 cut(s) 371
Tsp45I GTSAC 1 cut(s) 105
TspDTI ATGAA 4 cut(s) 173, 572, 576, 643
TspRI CASTG 4 cut(s) 178, 300, 381, 616
VpaK11BI GGWCC 1 cut(s) 379
XbaI TCTAGA 1 cut(s) 716
XceI RCATGY 3 cut(s) 137, 203, 476
XmnI GAANNNNTTC 1 cut(s) 164
XspI CTAG 5 cut(s) 83, 129, 182, 717, 742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.