Prupe.5G035100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0017308
Physical Location & Seq
Reverse (-)
3990674 .. 3993184
2511 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G035100.1

Sequence Viewer

Length: 756 bp
ATGGTTGTTTTCTTCAAAAGAGGAGGGAAGAAGAAGAAAATAATAATGCGACAATCGGTTGTCAGCTGGAACAACAGAGCACTGGCAACATATCGTATGCCGAACGGGTCATCAGAGTCGATGAACATTACAAAACATGTGCTCATCGTCATGGATGGGATGAAAGAGTTCACGACGGAGCCGCTTGAATGGGCCCTTGAGAATGTAATCAACGCTGGCTCTACTGTCACTCTTCTTGGTGTCATGCCATGGCTTAATATTCCCCTCTCTTCCAAGACATGGCTGGATGTTTGGCCGGTGGGACTAGAAGAATTGTCATTTGTCAAAGAGAAAAATGAGTGGAAAAGCGACCTCAAATATCTAAAGCTTCAAAAAGTGGTGGACCTTTGCAACAAATATGGGGTTTTTCCCCAGAAGAAAGTTATAATGGGTTATCCCTCACGGCTGCTGGTTGTTGAGCAAATTACAACCCTTCATGCGACATGGGTGGTCTTCGATAGGCATCAAAAGAATGATAGAAAATTTTACGCCGGGAAGCTTCCATGTAACATGGTGATGATGAACGAAGAGGGGGAAGTTGATATGATAAAGGGACGGCCCATGATAGATAGTGACAGCGCCGTTGGAGAGTCACCGGCCTCTTTGCTACCGACTCCGCAGCTGATGATCTGTGACCACTTGAAGGGAATTCTTAAGAAACGAGCACAAGATCTTCATCAAGACCCCGAGGATCAAGATCGGAAGGACGTGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

252

Amino Acids

28.73

Weight (kDa)

8.97

Isoelectric Point (pI)

39.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g22141
malus_domestica MD06G1034800.v1.1 MD16G1273800.v1.1
prunus_persica Prupe.5G035100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0209801
rosa_laevigata RLG00000003089
rosa_roxburghii Rroxscaffold_3G00248960
rosa_rugosa Rorug07G0116300
rosa_samantha Rh7AG250300 Rh7BG244200 Rh7CG266200 Rh7DG255900
rosa_wichuraiana Rw7G021200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 425
AccB7I CCANNNNNTGG 1 cut(s) 279
AciI CCGC 2 cut(s) 182, 656
AclWI GGATC 1 cut(s) 738
AcoI YGGCCR 1 cut(s) 293
AcsI RAATTY 2 cut(s) 521, 687
AfiI CCNNNNNNNGG 2 cut(s) 279, 682
AflII CTTAAG 1 cut(s) 692
AflIII ACRYGT 1 cut(s) 136
AgsI TTSAA 4 cut(s) 16, 188, 371, 682
AjiI CACGTC 1 cut(s) 748
AluBI AGCT 4 cut(s) 66, 367, 538, 661
AluI AGCT 4 cut(s) 66, 367, 538, 661
Alw21I GWGCWC 3 cut(s) 82, 144, 706
AlwI GGATC 1 cut(s) 738
Ama87I CYCGRG 1 cut(s) 725
AoxI GGCC 4 cut(s) 192, 293, 596, 636
ApaI GGGCCC 1 cut(s) 196
ApeKI GCWGC 2 cut(s) 445, 658
ApoI RAATTY 2 cut(s) 521, 687
Asp700I GAANNNNTTC 1 cut(s) 167
AspLEI GCGC 1 cut(s) 620
AspS9I GGNCC 4 cut(s) 192, 193, 382, 597
AsuC2I CCSGG 1 cut(s) 532
AsuHPI GGTGA 2 cut(s) 565, 624
AvaI CYCGRG 1 cut(s) 725
AvaII GGWCC 1 cut(s) 382
BaeGI GKGCMC 1 cut(s) 196
BanII GRGCYC 1 cut(s) 196
BbsI GAAGAC 1 cut(s) 484
Bbv12I GWGCWC 3 cut(s) 82, 144, 706
BbvI GCAGC 2 cut(s) 432, 670
BccI CCATC 1 cut(s) 149
BceAI ACGGC 3 cut(s) 458, 605, 611
BcnI CCSGG 1 cut(s) 532
BfaI CTAG 1 cut(s) 305
BfoI RGCGCY 1 cut(s) 621
BfrI CTTAAG 1 cut(s) 692
BglII AGATCT 1 cut(s) 709
BisI GCNGC 3 cut(s) 182, 446, 659
BlsI GCNGC 3 cut(s) 183, 447, 660
Bme1390I CCNGG 1 cut(s) 532
Bme18I GGWCC 1 cut(s) 382
BmeT110I CYCGRG 1 cut(s) 725
BmgBI CACGTC 1 cut(s) 748
BmgT120I GGNCC 4 cut(s) 192, 193, 382, 597
BmiI GGNNCC 2 cut(s) 180, 194
BmrFI CCNGG 1 cut(s) 532
BmsI GCATC 1 cut(s) 511
BpiI GAAGAC 1 cut(s) 484
BpuEI CTTGAG 1 cut(s) 218
BpuMI CCSGG 1 cut(s) 532
BsaBI GATNNNNATC 3 cut(s) 501, 714, 735
BsaJI CCNNGG 2 cut(s) 248, 726
Bsc4I CCNNNNNNNGG 2 cut(s) 279, 682
Bse118I RCCGGY 2 cut(s) 295, 634
Bse1I ACTGG 1 cut(s) 87
Bse8I GATNNNNATC 3 cut(s) 501, 714, 735
BseDI CCNNGG 2 cut(s) 248, 726
BseGI GGATG 3 cut(s) 160, 165, 292
BseJI GATNNNNATC 3 cut(s) 501, 714, 735
BseLI CCNNNNNNNGG 2 cut(s) 279, 682
BseNI ACTGG 1 cut(s) 87
BseRI GAGGAG 1 cut(s) 36
BseSI GKGCMC 1 cut(s) 196
BseXI GCAGC 2 cut(s) 432, 670
BshFI GGCC 4 cut(s) 194, 295, 598, 638
BsiHKAI GWGCWC 3 cut(s) 82, 144, 706
BsiHKCI CYCGRG 1 cut(s) 725
BsiSI CCGG 3 cut(s) 296, 531, 635
BslFI GGGAC 2 cut(s) 315, 606
BslI CCNNNNNNNGG 2 cut(s) 279, 682
BsmFI GGGAC 2 cut(s) 315, 606
BsnI GGCC 4 cut(s) 194, 295, 598, 638
BsoBI CYCGRG 1 cut(s) 725
Bsp120I GGGCCC 1 cut(s) 192
Bsp1286I GDGCHC 4 cut(s) 82, 144, 196, 706
Bsp143I GATC 4 cut(s) 666, 709, 730, 736
Bsp19I CCATGG 1 cut(s) 248
BspACI CCGC 2 cut(s) 182, 656
BspANI GGCC 4 cut(s) 194, 295, 598, 638
BspLI GGNNCC 2 cut(s) 180, 194
BspPI GGATC 1 cut(s) 738
BspTI CTTAAG 1 cut(s) 692
BsrFI RCCGGY 2 cut(s) 295, 634
BsrI ACTGG 1 cut(s) 87
BssAI RCCGGY 2 cut(s) 295, 634
BssECI CCNNGG 2 cut(s) 248, 726
BssMI GATC 4 cut(s) 666, 709, 730, 736
BssT1I CCWWGG 1 cut(s) 248
Bst4CI ACNGT 1 cut(s) 226
Bst6I CTCTTC 3 cut(s) 237, 274, 561
BstAFI CTTAAG 1 cut(s) 692
BstC8I GCNNGC 1 cut(s) 217
BstDSI CCRYGG 1 cut(s) 248
BstF5I GGATG 3 cut(s) 160, 165, 292
BstH2I RGCGCY 1 cut(s) 621
BstHHI GCGC 1 cut(s) 620
BstKTI GATC 4 cut(s) 669, 712, 733, 739
BstMBI GATC 4 cut(s) 666, 709, 730, 736
BstNSI RCATGY 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 530
BstSLI GKGCMC 1 cut(s) 196
BstV1I GCAGC 2 cut(s) 432, 670
BstV2I GAAGAC 1 cut(s) 484
BstX2I RGATCY 1 cut(s) 709
BstYI RGATCY 1 cut(s) 709
BsuRI GGCC 4 cut(s) 194, 295, 598, 638
BtgI CCRYGG 1 cut(s) 248
BtrI CACGTC 1 cut(s) 748
BtsCI GGATG 3 cut(s) 160, 165, 292
BtsIMutI CAGTG 1 cut(s) 80
Cac8I GCNNGC 1 cut(s) 217
CfoI GCGC 1 cut(s) 620
Cfr10I RCCGGY 2 cut(s) 295, 634
Cfr13I GGNCC 4 cut(s) 192, 193, 382, 597
DpnI GATC 4 cut(s) 668, 711, 732, 738
DpnII GATC 4 cut(s) 666, 709, 730, 736
EaeI YGGCCR 1 cut(s) 293
Eam1104I CTCTTC 3 cut(s) 237, 274, 561
EarI CTCTTC 3 cut(s) 237, 274, 561
Eco130I CCWWGG 1 cut(s) 248
Eco24I GRGCYC 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 382
Eco88I CYCGRG 1 cut(s) 725
EcoO109I RGGNCCY 1 cut(s) 193
EcoRI GAATTC 1 cut(s) 687
EcoT14I CCWWGG 1 cut(s) 248
EcoT38I GRGCYC 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 248
FaqI GGGAC 2 cut(s) 315, 606
Fnu4HI GCNGC 3 cut(s) 182, 446, 659
FokI GGATG 3 cut(s) 167, 172, 299
FriOI GRGCYC 1 cut(s) 196
Fsp4HI GCNGC 3 cut(s) 182, 446, 659
FspBI CTAG 1 cut(s) 305
GlaI GCGC 1 cut(s) 619
GluI GCNGC 3 cut(s) 182, 446, 659
HaeII RGCGCY 1 cut(s) 621
HaeIII GGCC 4 cut(s) 194, 295, 598, 638
HapII CCGG 3 cut(s) 296, 531, 635
HhaI GCGC 1 cut(s) 620
Hin6I GCGC 1 cut(s) 618
HinP1I GCGC 1 cut(s) 618
HindIII AAGCTT 2 cut(s) 365, 536
HinfI GANTC 3 cut(s) 116, 629, 652
HpaII CCGG 3 cut(s) 296, 531, 635
HphI GGTGA 2 cut(s) 565, 624
Hpy166II GTNNAC 2 cut(s) 171, 382
Hpy188I TCNGA 2 cut(s) 115, 741
Hpy188III TCNNGA 3 cut(s) 172, 719, 734
Hpy8I GTNNAC 2 cut(s) 171, 382
Hpy99I CGWCG 1 cut(s) 178
HpyAV CCTTC 3 cut(s) 482, 676, 736
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4IV ACGT 1 cut(s) 747
HpyCH4V TGCA 1 cut(s) 390
HpySE526I ACGT 1 cut(s) 747
HspAI GCGC 1 cut(s) 618
Kzo9I GATC 4 cut(s) 666, 709, 730, 736
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 9 cut(s) 52, 68, 201, 269, 309, 425, 434, 544, 648
Lsp1109I GCAGC 2 cut(s) 432, 670
LweI GCATC 1 cut(s) 511
MaeI CTAG 1 cut(s) 305
MaeII ACGT 1 cut(s) 747
MaeIII GTNAC 5 cut(s) 226, 545, 611, 630, 671
MalI GATC 4 cut(s) 668, 711, 732, 738
MboI GATC 4 cut(s) 666, 709, 730, 736
MflI RGATCY 1 cut(s) 709
MhlI GDGCHC 4 cut(s) 82, 144, 196, 706
MluCI AATT 4 cut(s) 311, 462, 521, 687
MlyI GAGTC 3 cut(s) 125, 638, 646
MmeI TCCRAC 1 cut(s) 604
MnlI CCTC 8 cut(s) 14, 17, 275, 362, 448, 562, 649, 721
MroXI GAANNNNTTC 1 cut(s) 167
MseI TTAA 2 cut(s) 255, 693
MslI CAYNNNNRTG 2 cut(s) 149, 554
MspA1I CMGCKG 2 cut(s) 66, 661
MspCI CTTAAG 1 cut(s) 692
MspI CCGG 3 cut(s) 296, 531, 635
MspR9I CCNGG 1 cut(s) 532
NciI CCSGG 1 cut(s) 532
NcoI CCATGG 1 cut(s) 248
NdeII GATC 4 cut(s) 666, 709, 730, 736
NlaIV GGNNCC 2 cut(s) 180, 194
NmuCI GTSAC 4 cut(s) 226, 611, 630, 671
NspI RCATGY 1 cut(s) 140
PciI ACATGT 1 cut(s) 136
PdmI GAANNNNTTC 1 cut(s) 167
PflMI CCANNNNNTGG 1 cut(s) 279
PkrI GCNGC 3 cut(s) 183, 447, 660
PleI GAGTC 3 cut(s) 124, 637, 646
PpsI GAGTC 3 cut(s) 124, 637, 646
PscI ACATGT 1 cut(s) 136
PsiI TTATAA 1 cut(s) 425
PspN4I GGNNCC 2 cut(s) 180, 194
PspOMI GGGCCC 1 cut(s) 192
PspPI GGNCC 4 cut(s) 192, 193, 382, 597
PsuI RGATCY 1 cut(s) 709
PvuII CAGCTG 2 cut(s) 66, 661
RseI CAYNNNNRTG 2 cut(s) 149, 554
SaqAI TTAA 2 cut(s) 255, 693
SatI GCNGC 3 cut(s) 182, 446, 659
Sau3AI GATC 4 cut(s) 666, 709, 730, 736
Sau96I GGNCC 4 cut(s) 192, 193, 382, 597
SchI GAGTC 3 cut(s) 125, 638, 646
ScrFI CCNGG 1 cut(s) 532
SduI GDGCHC 4 cut(s) 82, 144, 196, 706
SetI ASST 7 cut(s) 68, 354, 369, 387, 540, 663, 750
SfaNI GCATC 1 cut(s) 511
SinI GGWCC 1 cut(s) 382
SmiMI CAYNNNNRTG 2 cut(s) 149, 554
SmlI CTYRAG 2 cut(s) 197, 692
SmoI CTYRAG 2 cut(s) 197, 692
Sse9I AATT 4 cut(s) 311, 462, 521, 687
SsiI CCGC 2 cut(s) 182, 656
SspI AATATT 1 cut(s) 259
SspMI CTAG 1 cut(s) 305
StyD4I CCNGG 1 cut(s) 530
StyI CCWWGG 1 cut(s) 248
TaaI ACNGT 1 cut(s) 226
TaiI ACGT 1 cut(s) 750
TaqI TCGA 2 cut(s) 119, 495
TasI AATT 4 cut(s) 311, 462, 521, 687
TauI GCSGC 1 cut(s) 184
Tru1I TTAA 2 cut(s) 255, 693
Tru9I TTAA 2 cut(s) 255, 693
TscAI CASTG 1 cut(s) 87
TseFI GTSAC 4 cut(s) 226, 611, 630, 671
TseI GCWGC 2 cut(s) 445, 658
Tsp45I GTSAC 4 cut(s) 226, 611, 630, 671
TspDTI ATGAA 5 cut(s) 137, 176, 464, 575, 704
TspGWI ACGGA 1 cut(s) 191
TspRI CASTG 1 cut(s) 87
Van91I CCANNNNNTGG 1 cut(s) 279
Vha464I CTTAAG 1 cut(s) 692
VpaK11BI GGWCC 1 cut(s) 382
XapI RAATTY 2 cut(s) 521, 687
XceI RCATGY 1 cut(s) 140
XcmI CCANNNNNNNNNTGG 1 cut(s) 280
XmnI GAANNNNTTC 1 cut(s) 167
XspI CTAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.