RLG00000003089

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0017308
Physical Location & Seq
Reverse (-)
44304449 .. 44305652
1204 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003089

Sequence Viewer

Length: 744 bp
ATGGTGGTTTTCTTCAAAGGAGGAGTTAAGCAACGACTGGGAAGATCGATTAGTTTGAAGACAAAGAGAGCATTGCTAGACGATCTCCTGTTGCAGGAGTCACCAGGTTCGGCAAATACAGCTCGACATGTGATCATCGTCATGGATGCCATGAAAGAGTTCAACACGGCGCCTCTCGAGTGGGCACTGGAGCATGTAATCAAGGCTGGCACTGTTGTTATTCTTCTCGGTGTGATGCCATGGCTCAACATTCCTCTGTCTTCCAAGACATGGCTGGATATTTGGCCCGTTGGGTTAGAGGAACTATCAGCTGTGAAAGAGAAAATTGAGTGGAAGAGCGACGTCAAATATCTGAAGTTGCAGGCAGTGGTGGATCTTTGCAAAAACTATGGGGTTGTACTACAAAAGAAGGTTATCATGGGTTATCCCTCAAGACTGCTTGTTGTTGAAGAAATTATAGGCTTTCATGCCAAATGGGTCGTCTTCGATAGACATCAAAAGAATGACAGGAAGTTTTACAATGGGAAACTCCCATGCAACATGGTGATGATGAACGAAGAAGGGGAGGCTGACATGATCAAAGGGAGGACTATGATAGATAGCACCGTCGGAGGCTCAACACCTTCTCTGTTATCTACTCCGATTCTCATGATCTCTGATCATTTGAAGGAATTTCTTAACAAACCGAAACGTGCTCGGGAAGACTGCTCTAGGTCTAGATCCAGATCCCAAGGCGATGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

248

Amino Acids

27.92

Weight (kDa)

9.35

Isoelectric Point (pI)

42.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g22141
malus_domestica MD06G1034800.v1.1 MD16G1273800.v1.1
prunus_persica Prupe.5G035100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0209801
rosa_laevigata RLG00000003089
rosa_roxburghii Rroxscaffold_3G00248960
rosa_rugosa Rorug07G0116300
rosa_samantha Rh7AG250300 Rh7BG244200 Rh7CG266200 Rh7DG255900
rosa_wichuraiana Rw7G021200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 345
AccB1I GGYRCC 1 cut(s) 169
AccB7I CCANNNNNTGG 1 cut(s) 270
AclWI GGATC 3 cut(s) 381, 714, 720
AcsI RAATTY 1 cut(s) 671
AcuI CTGAAG 1 cut(s) 374
AcyI GRCGYC 2 cut(s) 170, 342
AfaI GTAC 1 cut(s) 399
AfiI CCNNNNNNNGG 2 cut(s) 94, 270
AflIII ACRYGT 1 cut(s) 127
AgsI TTSAA 5 cut(s) 16, 58, 163, 449, 667
AjnI CCWGG 1 cut(s) 103
AluBI AGCT 2 cut(s) 122, 311
AluI AGCT 2 cut(s) 122, 311
Alw21I GWGCWC 1 cut(s) 697
AlwI GGATC 3 cut(s) 381, 714, 720
Ama87I CYCGRG 2 cut(s) 176, 696
AoxI GGCC 1 cut(s) 284
ApoI RAATTY 1 cut(s) 671
ArsI GACNNNNNNTTYG 2 cut(s) 465, 497
Asp700I GAANNNNTTC 1 cut(s) 158
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 1 cut(s) 285
AsuHPI GGTGA 2 cut(s) 93, 556
AvaI CYCGRG 2 cut(s) 176, 696
BaeGI GKGCMC 1 cut(s) 187
BanI GGYRCC 1 cut(s) 169
BbsI GAAGAC 4 cut(s) 65, 252, 475, 708
Bbv12I GWGCWC 1 cut(s) 697
BceAI ACGGC 1 cut(s) 183
BciT130I CCWGG 1 cut(s) 105
BclI TGATCA 3 cut(s) 132, 576, 658
BfaI CTAG 4 cut(s) 77, 711, 717, 742
BfoI RGCGCY 1 cut(s) 173
Bme1390I CCNGG 1 cut(s) 105
BmeT110I CYCGRG 2 cut(s) 176, 696
BmgT120I GGNCC 1 cut(s) 285
BmiI GGNNCC 1 cut(s) 171
BmrFI CCNGG 1 cut(s) 105
BmrI ACTGGG 1 cut(s) 47
BmsI GCATC 2 cut(s) 136, 225
BmuI ACTGGG 1 cut(s) 47
BpiI GAAGAC 4 cut(s) 65, 252, 475, 708
BpmI CTGGAG 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 415
Bsa29I ATCGAT 1 cut(s) 47
BsaBI GATNNNNATC 2 cut(s) 492, 724
BsaHI GRCGYC 2 cut(s) 170, 342
BsaJI CCNNGG 2 cut(s) 239, 730
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 270
Bse1I ACTGG 2 cut(s) 42, 192
Bse3DI GCAATG 1 cut(s) 71
Bse8I GATNNNNATC 2 cut(s) 492, 724
BseBI CCWGG 1 cut(s) 105
BseCI ATCGAT 1 cut(s) 47
BseDI CCNNGG 2 cut(s) 239, 730
BseGI GGATG 1 cut(s) 151
BseJI GATNNNNATC 2 cut(s) 492, 724
BseLI CCNNNNNNNGG 2 cut(s) 94, 270
BseMI GCAATG 1 cut(s) 71
BseNI ACTGG 2 cut(s) 42, 192
BseRI GAGGAG 1 cut(s) 36
BseSI GKGCMC 1 cut(s) 187
BshFI GGCC 1 cut(s) 286
BshNI GGYRCC 1 cut(s) 169
BshVI ATCGAT 1 cut(s) 47
BsiHKAI GWGCWC 1 cut(s) 697
BsiHKCI CYCGRG 2 cut(s) 176, 696
BslI CCNNNNNNNGG 2 cut(s) 94, 270
BsnI GGCC 1 cut(s) 286
BsoBI CYCGRG 2 cut(s) 176, 696
Bsp1286I GDGCHC 2 cut(s) 187, 697
Bsp143I GATC 9 cut(s) 44, 82, 132, 373, 576, 651, 658, 719, 725
Bsp19I CCATGG 1 cut(s) 239
BspANI GGCC 1 cut(s) 286
BspDI ATCGAT 1 cut(s) 47
BspHI TCATGA 1 cut(s) 648
BspLI GGNNCC 1 cut(s) 171
BspPI GGATC 3 cut(s) 381, 714, 720
BspQI GCTCTTC 1 cut(s) 329
BspT107I GGYRCC 1 cut(s) 169
BsrDI GCAATG 1 cut(s) 71
BsrI ACTGG 2 cut(s) 42, 192
BssECI CCNNGG 2 cut(s) 239, 730
BssMI GATC 9 cut(s) 44, 82, 132, 373, 576, 651, 658, 719, 725
BssNI GRCGYC 2 cut(s) 170, 342
BssT1I CCWWGG 2 cut(s) 239, 730
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 2 cut(s) 214, 607
Bst6I CTCTTC 1 cut(s) 329
BstACI GRCGYC 2 cut(s) 170, 342
BstC8I GCNNGC 2 cut(s) 208, 363
BstDSI CCRYGG 1 cut(s) 239
BstENI CCTNNNNNAGG 1 cut(s) 92
BstF5I GGATG 1 cut(s) 151
BstH2I RGCGCY 1 cut(s) 173
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 9 cut(s) 47, 85, 135, 376, 579, 654, 661, 722, 728
BstMBI GATC 9 cut(s) 44, 82, 132, 373, 576, 651, 658, 719, 725
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstNI CCWGG 1 cut(s) 105
BstNSI RCATGY 2 cut(s) 131, 197
BstSCI CCNGG 1 cut(s) 103
BstSLI GKGCMC 1 cut(s) 187
BstV2I GAAGAC 4 cut(s) 65, 252, 475, 708
BstX2I RGATCY 3 cut(s) 373, 719, 725
BstYI RGATCY 3 cut(s) 373, 719, 725
Bsu15I ATCGAT 1 cut(s) 47
BsuRI GGCC 1 cut(s) 286
BsuTUI ATCGAT 1 cut(s) 47
BtgI CCRYGG 1 cut(s) 239
BtsCI GGATG 1 cut(s) 151
BtsI GCAGTG 1 cut(s) 372
BtsIMutI CAGTG 3 cut(s) 185, 210, 372
Cac8I GCNNGC 2 cut(s) 208, 363
CciI TCATGA 1 cut(s) 648
CfoI GCGC 1 cut(s) 172
Cfr13I GGNCC 1 cut(s) 285
ClaI ATCGAT 1 cut(s) 47
CsiI ACCWGGT 1 cut(s) 103
Csp6I GTAC 1 cut(s) 398
CviJI RGCY 9 cut(s) 122, 206, 244, 274, 286, 311, 462, 569, 615
CviKI_1 RGCY 9 cut(s) 122, 206, 244, 274, 286, 311, 462, 569, 615
CviQI GTAC 1 cut(s) 398
DinI GGCGCC 1 cut(s) 171
DpnI GATC 9 cut(s) 46, 84, 134, 375, 578, 653, 660, 721, 727
DpnII GATC 9 cut(s) 44, 82, 132, 373, 576, 651, 658, 719, 725
Eam1104I CTCTTC 1 cut(s) 329
EarI CTCTTC 1 cut(s) 329
Eco130I CCWWGG 2 cut(s) 239, 730
Eco57I CTGAAG 1 cut(s) 374
Eco88I CYCGRG 2 cut(s) 176, 696
EcoNI CCTNNNNNAGG 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 103
EcoT14I CCWWGG 2 cut(s) 239, 730
EgeI GGCGCC 1 cut(s) 171
EheI GGCGCC 1 cut(s) 171
ErhI CCWWGG 2 cut(s) 239, 730
FbaI TGATCA 3 cut(s) 132, 576, 658
FokI GGATG 1 cut(s) 158
FspBI CTAG 4 cut(s) 77, 711, 717, 742
GlaI GCGC 1 cut(s) 171
GsuI CTGGAG 1 cut(s) 209
HaeII RGCGCY 1 cut(s) 173
HaeIII GGCC 1 cut(s) 286
HhaI GCGC 1 cut(s) 172
Hin1I GRCGYC 2 cut(s) 170, 342
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HinfI GANTC 2 cut(s) 98, 643
HphI GGTGA 2 cut(s) 93, 556
Hpy188I TCNGA 4 cut(s) 354, 611, 642, 658
Hpy188III TCNNGA 6 cut(s) 176, 432, 649, 698, 717, 723
Hpy99I CGWCG 2 cut(s) 344, 611
HpyAV CCTTC 4 cut(s) 403, 554, 633, 661
HpyCH4III ACNGT 2 cut(s) 214, 607
HpyCH4IV ACGT 2 cut(s) 342, 691
HpyCH4V TGCA 4 cut(s) 94, 361, 381, 537
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpySE526I ACGT 2 cut(s) 342, 691
Hsp92I GRCGYC 2 cut(s) 170, 342
HspAI GCGC 1 cut(s) 170
KasI GGCGCC 1 cut(s) 169
Ksp22I TGATCA 3 cut(s) 132, 576, 658
Kzo9I GATC 9 cut(s) 44, 82, 132, 373, 576, 651, 658, 719, 725
LguI GCTCTTC 1 cut(s) 329
LmnI GCTCC 1 cut(s) 190
LweI GCATC 2 cut(s) 136, 225
MabI ACCWGGT 1 cut(s) 103
MaeI CTAG 4 cut(s) 77, 711, 717, 742
MaeII ACGT 2 cut(s) 342, 691
MaeIII GTNAC 1 cut(s) 99
MalI GATC 9 cut(s) 46, 84, 134, 375, 578, 653, 660, 721, 727
MboI GATC 9 cut(s) 44, 82, 132, 373, 576, 651, 658, 719, 725
MflI RGATCY 3 cut(s) 373, 719, 725
MhlI GDGCHC 2 cut(s) 187, 697
MluCI AATT 3 cut(s) 324, 453, 671
Mly113I GGCGCC 1 cut(s) 170
MlyI GAGTC 1 cut(s) 107
MmeI TCCRAC 1 cut(s) 589
MnlI CCTC 8 cut(s) 14, 183, 264, 292, 439, 559, 579, 605
MroXI GAANNNNTTC 1 cut(s) 158
MseI TTAA 2 cut(s) 27, 678
MslI CAYNNNNRTG 2 cut(s) 140, 545
MspA1I CMGCKG 1 cut(s) 311
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
MwoI GCNNNNNNNGC 1 cut(s) 119
NarI GGCGCC 1 cut(s) 170
NcoI CCATGG 1 cut(s) 239
NdeII GATC 9 cut(s) 44, 82, 132, 373, 576, 651, 658, 719, 725
NlaIV GGNNCC 1 cut(s) 171
NmuCI GTSAC 1 cut(s) 99
NspI RCATGY 2 cut(s) 131, 197
PaeR7I CTCGAG 1 cut(s) 176
PagI TCATGA 1 cut(s) 648
PciI ACATGT 1 cut(s) 127
PciSI GCTCTTC 1 cut(s) 329
PdmI GAANNNNTTC 1 cut(s) 158
PfeI GAWTC 1 cut(s) 643
PflMI CCANNNNNTGG 1 cut(s) 270
PleI GAGTC 1 cut(s) 106
PluTI GGCGCC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 106
PscI ACATGT 1 cut(s) 127
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 171
PspPI GGNCC 1 cut(s) 285
PsuI RGATCY 3 cut(s) 373, 719, 725
PvuII CAGCTG 1 cut(s) 311
RsaI GTAC 1 cut(s) 399
RsaNI GTAC 1 cut(s) 398
RseI CAYNNNNRTG 2 cut(s) 140, 545
SapI GCTCTTC 1 cut(s) 329
SaqAI TTAA 2 cut(s) 27, 678
Sau3AI GATC 9 cut(s) 44, 82, 132, 373, 576, 651, 658, 719, 725
Sau96I GGNCC 1 cut(s) 285
SchI GAGTC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 105
SduI GDGCHC 2 cut(s) 187, 697
SetI ASST 8 cut(s) 109, 124, 313, 345, 414, 625, 694, 716
SexAI ACCWGGT 1 cut(s) 103
SfaNI GCATC 2 cut(s) 136, 225
SfoI GGCGCC 1 cut(s) 171
Sfr274I CTCGAG 1 cut(s) 176
SlaI CTCGAG 1 cut(s) 176
SmiMI CAYNNNNRTG 2 cut(s) 140, 545
SmlI CTYRAG 2 cut(s) 176, 430
SmoI CTYRAG 2 cut(s) 176, 430
Sse9I AATT 3 cut(s) 324, 453, 671
SspDI GGCGCC 1 cut(s) 169
SspMI CTAG 4 cut(s) 77, 711, 717, 742
StyD4I CCNGG 1 cut(s) 103
StyI CCWWGG 2 cut(s) 239, 730
TaaI ACNGT 2 cut(s) 214, 607
TaiI ACGT 2 cut(s) 345, 694
TaqI TCGA 4 cut(s) 47, 124, 177, 486
TasI AATT 3 cut(s) 324, 453, 671
TatI WGTACW 1 cut(s) 397
TfiI GAWTC 1 cut(s) 643
Tru1I TTAA 2 cut(s) 27, 678
Tru9I TTAA 2 cut(s) 27, 678
TscAI CASTG 3 cut(s) 192, 217, 372
TseFI GTSAC 1 cut(s) 99
Tsp45I GTSAC 1 cut(s) 99
TspDTI ATGAA 3 cut(s) 167, 455, 566
TspRI CASTG 3 cut(s) 192, 217, 372
Van91I CCANNNNNTGG 1 cut(s) 270
XagI CCTNNNNNAGG 1 cut(s) 92
XapI RAATTY 1 cut(s) 671
XbaI TCTAGA 1 cut(s) 716
XceI RCATGY 2 cut(s) 131, 197
XcmI CCANNNNNNNNNTGG 1 cut(s) 271
XhoI CTCGAG 1 cut(s) 176
XmnI GAANNNNTTC 1 cut(s) 158
XspI CTAG 4 cut(s) 77, 711, 717, 742
ZraI GACGTC 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.