MD06G1034800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0017308
Physical Location & Seq
Forward (+)
4322127 .. 4323031
905 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1034800.v1.1.491

Sequence Viewer

Length: 474 bp
ATGGGCAAATCTATTCTCAGCCGGAACAGGAAAGCAATGGAGAAAGACATTATGAAGGAGTCCTCGGAGTCGATGAACACTCCGAAACATGTACTCATCGTGATGGATGGCATGAAAGAGTTCACAACAGAGCCGCTTGAATGGGTGCTCGAGAATATTGTAATCAACGCCGGTTCTACTGTCACTCTTCTTGGTGTCATGCCATGGCTTAACATTCCCCTCTCTTCCAAGACATGGCTGGATGTTTGGCCGGTGGGATTAGAAGAATTATCATTTTTCAAAGAGAAAAATGAGTCGAGGAGTGACATCAAATATCTAAAGCTTCAGAAAGTCGTAAACCTTTGCAGCAAATATGGGGTTTTTCCACAGAAGAAAGTTATAATGGGTTATCCCTCACGCTCGCTGGTTGTTGAGCAAATTGCAACCCTTCATGCGACATGGGTGGTTTTCGACAGGTATATAAGCAAGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

18.05

Weight (kDa)

9.14

Isoelectric Point (pI)

39.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g22141
malus_domestica MD06G1034800.v1.1 MD16G1273800.v1.1
prunus_persica Prupe.5G035100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0209801
rosa_laevigata RLG00000003089
rosa_roxburghii Rroxscaffold_3G00248960
rosa_rugosa Rorug07G0116300
rosa_samantha Rh7AG250300 Rh7BG244200 Rh7CG266200 Rh7DG255900
rosa_wichuraiana Rw7G021200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 380
AccB7I CCANNNNNTGG 1 cut(s) 234
AciI CCGC 1 cut(s) 134
AcoI YGGCCR 1 cut(s) 248
AcuI CTGAAG 1 cut(s) 308
AfaI GTAC 1 cut(s) 93
AfiI CCNNNNNNNGG 1 cut(s) 234
AflIII ACRYGT 1 cut(s) 88
AgsI TTSAA 2 cut(s) 140, 280
AluBI AGCT 1 cut(s) 322
AluI AGCT 1 cut(s) 322
Alw21I GWGCWC 1 cut(s) 150
Ama87I CYCGRG 1 cut(s) 149
AoxI GGCC 1 cut(s) 248
ApeKI GCWGC 1 cut(s) 345
Asp700I GAANNNNTTC 1 cut(s) 119
AvaI CYCGRG 1 cut(s) 149
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 1 cut(s) 357
BccI CCATC 2 cut(s) 97, 101
BisI GCNGC 2 cut(s) 134, 346
BlsI GCNGC 2 cut(s) 135, 347
BmeT110I CYCGRG 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 63, 203
Bsc4I CCNNNNNNNGG 1 cut(s) 234
Bse118I RCCGGY 2 cut(s) 170, 250
Bse3DI GCAATG 1 cut(s) 42
BseDI CCNNGG 2 cut(s) 63, 203
BseGI GGATG 2 cut(s) 112, 247
BseLI CCNNNNNNNGG 1 cut(s) 234
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 31
BseRI GAGGAG 1 cut(s) 313
BseXI GCAGC 1 cut(s) 357
BshFI GGCC 1 cut(s) 250
BsiHKAI GWGCWC 1 cut(s) 150
BsiHKCI CYCGRG 1 cut(s) 149
BsiSI CCGG 3 cut(s) 22, 171, 251
BslI CCNNNNNNNGG 1 cut(s) 234
BsnI GGCC 1 cut(s) 250
BsoBI CYCGRG 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 150
Bsp19I CCATGG 1 cut(s) 203
BspACI CCGC 1 cut(s) 134
BspANI GGCC 1 cut(s) 250
BspCNI CTCAG 1 cut(s) 30
BsrDI GCAATG 1 cut(s) 42
BsrFI RCCGGY 2 cut(s) 170, 250
BssAI RCCGGY 2 cut(s) 170, 250
BssECI CCNNGG 2 cut(s) 63, 203
BssT1I CCWWGG 1 cut(s) 203
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 2 cut(s) 192, 229
BstC8I GCNNGC 2 cut(s) 401, 467
BstDEI CTNAG 1 cut(s) 17
BstDSI CCRYGG 1 cut(s) 203
BstF5I GGATG 2 cut(s) 112, 247
BstNSI RCATGY 1 cut(s) 92
BstV1I GCAGC 1 cut(s) 357
BsuRI GGCC 1 cut(s) 250
BtgI CCRYGG 1 cut(s) 203
BtsCI GGATG 2 cut(s) 112, 247
Cac8I GCNNGC 2 cut(s) 401, 467
Cfr10I RCCGGY 2 cut(s) 170, 250
Csp6I GTAC 1 cut(s) 92
CviAII CATG 7 cut(s) 89, 112, 199, 204, 234, 431, 438
CviJI RGCY 6 cut(s) 21, 133, 208, 238, 250, 322
CviKI_1 RGCY 6 cut(s) 21, 133, 208, 238, 250, 322
CviQI GTAC 1 cut(s) 92
DdeI CTNAG 1 cut(s) 17
EaeI YGGCCR 1 cut(s) 248
Eam1104I CTCTTC 2 cut(s) 192, 229
EarI CTCTTC 2 cut(s) 192, 229
Eco130I CCWWGG 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 308
Eco88I CYCGRG 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 7 cut(s) 92, 115, 202, 207, 237, 434, 441
FatI CATG 7 cut(s) 88, 111, 198, 203, 233, 430, 437
Fnu4HI GCNGC 2 cut(s) 134, 346
FokI GGATG 2 cut(s) 119, 254
Fsp4HI GCNGC 2 cut(s) 134, 346
GluI GCNGC 2 cut(s) 134, 346
HaeIII GGCC 1 cut(s) 250
HapII CCGG 3 cut(s) 22, 171, 251
Hin1II CATG 7 cut(s) 92, 115, 202, 207, 237, 434, 441
HindIII AAGCTT 1 cut(s) 320
HinfI GANTC 3 cut(s) 59, 68, 293
HpaII CCGG 3 cut(s) 22, 171, 251
Hpy166II GTNNAC 2 cut(s) 123, 337
Hpy188I TCNGA 3 cut(s) 67, 84, 327
Hpy188III TCNNGA 2 cut(s) 100, 151
Hpy8I GTNNAC 2 cut(s) 123, 337
HpyAV CCTTC 2 cut(s) 49, 437
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 2 cut(s) 345, 422
HpyF3I CTNAG 1 cut(s) 17
Hsp92II CATG 7 cut(s) 92, 115, 202, 207, 237, 434, 441
LpnPI CCDG 7 cut(s) 13, 35, 184, 224, 264, 389, 439
Lsp1109I GCAGC 1 cut(s) 357
MaeIII GTNAC 2 cut(s) 181, 302
MboII GAAGA 4 cut(s) 179, 216, 275, 382
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 2 cut(s) 266, 417
MlyI GAGTC 3 cut(s) 68, 77, 302
MnlI CCTC 4 cut(s) 73, 230, 291, 403
MroXI GAANNNNTTC 1 cut(s) 119
MseI TTAA 2 cut(s) 210, 472
MslI CAYNNNNRTG 1 cut(s) 101
MspI CCGG 3 cut(s) 22, 171, 251
NcoI CCATGG 1 cut(s) 203
NlaIII CATG 7 cut(s) 92, 115, 202, 207, 237, 434, 441
NmuCI GTSAC 2 cut(s) 181, 302
NspI RCATGY 1 cut(s) 92
PaeR7I CTCGAG 1 cut(s) 149
PciI ACATGT 1 cut(s) 88
PdmI GAANNNNTTC 1 cut(s) 119
PflMI CCANNNNNTGG 1 cut(s) 234
PkrI GCNGC 2 cut(s) 135, 347
PleI GAGTC 3 cut(s) 67, 76, 301
PpsI GAGTC 3 cut(s) 67, 76, 301
PscI ACATGT 1 cut(s) 88
PsiI TTATAA 1 cut(s) 380
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
RseI CAYNNNNRTG 1 cut(s) 101
SaqAI TTAA 2 cut(s) 210, 472
SatI GCNGC 2 cut(s) 134, 346
SchI GAGTC 3 cut(s) 68, 77, 302
SduI GDGCHC 1 cut(s) 150
SetI ASST 3 cut(s) 324, 342, 458
Sfr274I CTCGAG 1 cut(s) 149
SlaI CTCGAG 1 cut(s) 149
SmiMI CAYNNNNRTG 1 cut(s) 101
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 2 cut(s) 266, 417
SsiI CCGC 1 cut(s) 134
SspI AATATT 1 cut(s) 157
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 1 cut(s) 181
TaqI TCGA 4 cut(s) 71, 150, 296, 450
TasI AATT 2 cut(s) 266, 417
TatI WGTACW 1 cut(s) 91
TauI GCSGC 1 cut(s) 136
Tru1I TTAA 2 cut(s) 210, 472
Tru9I TTAA 2 cut(s) 210, 472
TseFI GTSAC 2 cut(s) 181, 302
TseI GCWGC 1 cut(s) 345
Tsp45I GTSAC 2 cut(s) 181, 302
TspDTI ATGAA 4 cut(s) 68, 89, 128, 419
Van91I CCANNNNNTGG 1 cut(s) 234
XceI RCATGY 1 cut(s) 92
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
XhoI CTCGAG 1 cut(s) 149
XmnI GAANNNNTTC 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.