Rw7G021200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0017308
Physical Location & Seq
Forward (+)
24424550 .. 24425596
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G021200.1

Sequence Viewer

Length: 603 bp
ATGGACGCCATGAAAGAGTTCAACACGGCGCCTCTCGAGTGGGCACTGGAGCATGTAATCAAGGCTGGCACTGTTGTTATTCTTCTCGGTGTGATGCCATGGCTCAACATTCCTCTGTCTTCCAAGACATGGCTGGATATTTGGCCCGTTGGGTTAGAGGAACTATCAGCTGTGAAAGAGAAAATTGAGTGGAAGAGCGATGTCAAATATCTGAAGTTGCAGGCAGTTGTGGATCTTTGCAAAAACTATGGGGTTGTACTACAAAAGAAGGTTATCATGGGTTATCCCTCAAGACTGCTTGTTGTTGAAGAAATTATAGGCTTTCATGCCAAATGGGTCGTCTTCGATAGACATCAAAAGAATGACAGGAAGTTTTACAATGGGAAACTTCCATGCAACATGGTGATGATGAACGAAGAAGGGGAGGCTGACATGATCAAAGGGAGGACTATGATAGATAGCACCGTCGGAGGCTCAACACCTTCTCTGTTATCTACTCCGATTCTCATGATCTCTGATCATTTGAAGGAATTTCTTAACAAACCGAAACGTGCTCGAGAAGACCGCTCTAGATCTAGATCCAGATCCCTAGGCGATGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

22.81

Weight (kDa)

8.98

Isoelectric Point (pI)

40.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g22141
malus_domestica MD06G1034800.v1.1 MD16G1273800.v1.1
prunus_persica Prupe.5G035100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0209801
rosa_laevigata RLG00000003089
rosa_roxburghii Rroxscaffold_3G00248960
rosa_rugosa Rorug07G0116300
rosa_samantha Rh7AG250300 Rh7BG244200 Rh7CG266200 Rh7DG255900
rosa_wichuraiana Rw7G021200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 28
AccB7I CCANNNNNTGG 1 cut(s) 129
AccBSI CCGCTC 1 cut(s) 567
AciI CCGC 1 cut(s) 565
AclWI GGATC 3 cut(s) 240, 573, 579
AcsI RAATTY 1 cut(s) 530
AcuI CTGAAG 1 cut(s) 233
AcyI GRCGYC 2 cut(s) 6, 29
AfaI GTAC 1 cut(s) 258
AfiI CCNNNNNNNGG 1 cut(s) 129
AgsI TTSAA 3 cut(s) 22, 308, 526
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
Alw21I GWGCWC 1 cut(s) 556
AlwI GGATC 3 cut(s) 240, 573, 579
Ama87I CYCGRG 2 cut(s) 35, 555
AoxI GGCC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 530
ArsI GACNNNNNNTTYG 2 cut(s) 324, 356
Asp700I GAANNNNTTC 1 cut(s) 17
AspA2I CCTAGG 1 cut(s) 589
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 1 cut(s) 144
AsuHPI GGTGA 1 cut(s) 415
AvaI CYCGRG 2 cut(s) 35, 555
AvrII CCTAGG 1 cut(s) 589
BaeGI GKGCMC 1 cut(s) 46
BanI GGYRCC 1 cut(s) 28
BbsI GAAGAC 3 cut(s) 111, 334, 567
Bbv12I GWGCWC 1 cut(s) 556
BceAI ACGGC 1 cut(s) 42
BclI TGATCA 2 cut(s) 435, 517
BfaI CTAG 4 cut(s) 570, 576, 590, 601
BfoI RGCGCY 1 cut(s) 32
BglII AGATCT 1 cut(s) 572
BlnI CCTAGG 1 cut(s) 589
BmeT110I CYCGRG 2 cut(s) 35, 555
BmgT120I GGNCC 1 cut(s) 144
BmiI GGNNCC 1 cut(s) 30
BmsI GCATC 1 cut(s) 84
BpiI GAAGAC 3 cut(s) 111, 334, 567
BpmI CTGGAG 1 cut(s) 68
BpuEI CTTGAG 1 cut(s) 274
BsaBI GATNNNNATC 3 cut(s) 351, 577, 583
BsaHI GRCGYC 2 cut(s) 6, 29
BsaJI CCNNGG 2 cut(s) 98, 589
Bsc4I CCNNNNNNNGG 1 cut(s) 129
Bse1I ACTGG 1 cut(s) 51
Bse8I GATNNNNATC 3 cut(s) 351, 577, 583
BseDI CCNNGG 2 cut(s) 98, 589
BseJI GATNNNNATC 3 cut(s) 351, 577, 583
BseLI CCNNNNNNNGG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 51
BseSI GKGCMC 1 cut(s) 46
BshFI GGCC 1 cut(s) 145
BshNI GGYRCC 1 cut(s) 28
BsiHKAI GWGCWC 1 cut(s) 556
BsiHKCI CYCGRG 2 cut(s) 35, 555
BslI CCNNNNNNNGG 1 cut(s) 129
BsnI GGCC 1 cut(s) 145
BsoBI CYCGRG 2 cut(s) 35, 555
Bsp1286I GDGCHC 2 cut(s) 46, 556
Bsp143I GATC 7 cut(s) 232, 435, 510, 517, 572, 578, 584
Bsp19I CCATGG 1 cut(s) 98
BspACI CCGC 1 cut(s) 565
BspANI GGCC 1 cut(s) 145
BspHI TCATGA 1 cut(s) 507
BspLI GGNNCC 1 cut(s) 30
BspPI GGATC 3 cut(s) 240, 573, 579
BspQI GCTCTTC 1 cut(s) 188
BspT107I GGYRCC 1 cut(s) 28
BsrBI CCGCTC 1 cut(s) 567
BsrI ACTGG 1 cut(s) 51
BssECI CCNNGG 2 cut(s) 98, 589
BssMI GATC 7 cut(s) 232, 435, 510, 517, 572, 578, 584
BssNI GRCGYC 2 cut(s) 6, 29
BssT1I CCWWGG 2 cut(s) 98, 589
Bst4CI ACNGT 2 cut(s) 73, 466
Bst6I CTCTTC 1 cut(s) 188
BstACI GRCGYC 2 cut(s) 6, 29
BstC8I GCNNGC 2 cut(s) 67, 222
BstDSI CCRYGG 1 cut(s) 98
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 7 cut(s) 235, 438, 513, 520, 575, 581, 587
BstMBI GATC 7 cut(s) 232, 435, 510, 517, 572, 578, 584
BstNSI RCATGY 1 cut(s) 56
BstSLI GKGCMC 1 cut(s) 46
BstV2I GAAGAC 3 cut(s) 111, 334, 567
BstX2I RGATCY 4 cut(s) 232, 572, 578, 584
BstYI RGATCY 4 cut(s) 232, 572, 578, 584
BsuRI GGCC 1 cut(s) 145
BtgI CCRYGG 1 cut(s) 98
BtgZI GCGATG 1 cut(s) 213
BtsIMutI CAGTG 2 cut(s) 44, 69
Cac8I GCNNGC 2 cut(s) 67, 222
CciI TCATGA 1 cut(s) 507
CfoI GCGC 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 144
CseI GACGC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 257
CviJI RGCY 8 cut(s) 65, 103, 133, 145, 170, 321, 428, 474
CviKI_1 RGCY 8 cut(s) 65, 103, 133, 145, 170, 321, 428, 474
CviQI GTAC 1 cut(s) 257
DinI GGCGCC 1 cut(s) 30
DpnI GATC 7 cut(s) 234, 437, 512, 519, 574, 580, 586
DpnII GATC 7 cut(s) 232, 435, 510, 517, 572, 578, 584
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
Eco130I CCWWGG 2 cut(s) 98, 589
Eco57I CTGAAG 1 cut(s) 233
Eco88I CYCGRG 2 cut(s) 35, 555
EcoT14I CCWWGG 2 cut(s) 98, 589
EgeI GGCGCC 1 cut(s) 30
EheI GGCGCC 1 cut(s) 30
ErhI CCWWGG 2 cut(s) 98, 589
FbaI TGATCA 2 cut(s) 435, 517
FspBI CTAG 4 cut(s) 570, 576, 590, 601
GlaI GCGC 1 cut(s) 30
GsuI CTGGAG 1 cut(s) 68
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 1 cut(s) 145
HgaI GACGC 1 cut(s) 14
HhaI GCGC 1 cut(s) 31
Hin1I GRCGYC 2 cut(s) 6, 29
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HinfI GANTC 1 cut(s) 502
HphI GGTGA 1 cut(s) 415
Hpy188I TCNGA 4 cut(s) 213, 470, 501, 517
Hpy188III TCNNGA 7 cut(s) 35, 291, 508, 557, 570, 576, 582
Hpy99I CGWCG 1 cut(s) 470
HpyAV CCTTC 4 cut(s) 262, 413, 492, 520
HpyCH4III ACNGT 2 cut(s) 73, 466
HpyCH4IV ACGT 1 cut(s) 550
HpyCH4V TGCA 3 cut(s) 220, 240, 396
HpySE526I ACGT 1 cut(s) 550
Hsp92I GRCGYC 2 cut(s) 6, 29
HspAI GCGC 1 cut(s) 29
KasI GGCGCC 1 cut(s) 28
Ksp22I TGATCA 2 cut(s) 435, 517
Kzo9I GATC 7 cut(s) 232, 435, 510, 517, 572, 578, 584
LguI GCTCTTC 1 cut(s) 188
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 6 cut(s) 32, 51, 119, 206, 352, 595
LweI GCATC 1 cut(s) 84
MaeI CTAG 4 cut(s) 570, 576, 590, 601
MaeII ACGT 1 cut(s) 550
MalI GATC 7 cut(s) 234, 437, 512, 519, 574, 580, 586
MbiI CCGCTC 1 cut(s) 567
MboI GATC 7 cut(s) 232, 435, 510, 517, 572, 578, 584
MboII GAAGA 7 cut(s) 74, 111, 205, 320, 334, 428, 572
MflI RGATCY 4 cut(s) 232, 572, 578, 584
MhlI GDGCHC 2 cut(s) 46, 556
MluCI AATT 3 cut(s) 183, 312, 530
Mly113I GGCGCC 1 cut(s) 29
MmeI TCCRAC 1 cut(s) 448
MnlI CCTC 7 cut(s) 42, 123, 151, 298, 418, 438, 464
MroXI GAANNNNTTC 1 cut(s) 17
MseI TTAA 1 cut(s) 537
MslI CAYNNNNRTG 1 cut(s) 404
MspA1I CMGCKG 1 cut(s) 170
NarI GGCGCC 1 cut(s) 29
NcoI CCATGG 1 cut(s) 98
NdeII GATC 7 cut(s) 232, 435, 510, 517, 572, 578, 584
NlaIV GGNNCC 1 cut(s) 30
NspI RCATGY 1 cut(s) 56
PaeR7I CTCGAG 2 cut(s) 35, 555
PagI TCATGA 1 cut(s) 507
PciSI GCTCTTC 1 cut(s) 188
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 1 cut(s) 502
PflMI CCANNNNNTGG 1 cut(s) 129
PluTI GGCGCC 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 30
PspPI GGNCC 1 cut(s) 144
PsuI RGATCY 4 cut(s) 232, 572, 578, 584
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 1 cut(s) 258
RsaNI GTAC 1 cut(s) 257
RseI CAYNNNNRTG 1 cut(s) 404
SapI GCTCTTC 1 cut(s) 188
SaqAI TTAA 1 cut(s) 537
Sau3AI GATC 7 cut(s) 232, 435, 510, 517, 572, 578, 584
Sau96I GGNCC 1 cut(s) 144
SduI GDGCHC 2 cut(s) 46, 556
SetI ASST 4 cut(s) 172, 273, 484, 553
SfaNI GCATC 1 cut(s) 84
SfoI GGCGCC 1 cut(s) 30
Sfr274I CTCGAG 2 cut(s) 35, 555
SlaI CTCGAG 2 cut(s) 35, 555
SmiMI CAYNNNNRTG 1 cut(s) 404
SmlI CTYRAG 3 cut(s) 35, 289, 555
SmoI CTYRAG 3 cut(s) 35, 289, 555
Sse9I AATT 3 cut(s) 183, 312, 530
SsiI CCGC 1 cut(s) 565
SspDI GGCGCC 1 cut(s) 28
SspMI CTAG 4 cut(s) 570, 576, 590, 601
StyI CCWWGG 2 cut(s) 98, 589
TaaI ACNGT 2 cut(s) 73, 466
TaiI ACGT 1 cut(s) 553
TaqI TCGA 3 cut(s) 36, 345, 556
TasI AATT 3 cut(s) 183, 312, 530
TatI WGTACW 1 cut(s) 256
TfiI GAWTC 1 cut(s) 502
Tru1I TTAA 1 cut(s) 537
Tru9I TTAA 1 cut(s) 537
TscAI CASTG 2 cut(s) 51, 76
TspDTI ATGAA 3 cut(s) 26, 314, 425
TspRI CASTG 2 cut(s) 51, 76
Van91I CCANNNNNTGG 1 cut(s) 129
XapI RAATTY 1 cut(s) 530
XbaI TCTAGA 2 cut(s) 569, 575
XceI RCATGY 1 cut(s) 56
XcmI CCANNNNNNNNNTGG 1 cut(s) 130
XhoI CTCGAG 2 cut(s) 35, 555
XmaJI CCTAGG 1 cut(s) 589
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 4 cut(s) 570, 576, 590, 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.