Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009690

Physical Location & Seq

Genomic Coordinates Forward (+)

14875404 .. 14876576

Gene Structure 1173 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g23530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGATCTGAATGAAAAGGGATGTGAAGATTCTGACAATACTACATATTACTACGCCAACTCCGACATGAGTGGTGATGAGATAGGGTCTCAAATGAGTTATGAGGATGATGATGAAGATTACGACGAAGGTTTTGAAATGAGTCTTGCTGATGAGGATGAAAAGATGGAGCACTCCGATGAAGATTACGATGTAGGAGATTGGGATGAAAAGGTCGTGCACCCTGAGGATGGCGGCCATGATTATGTTGGGACGACATCGTTTTGGCAGAGGTATCATTGTTATCCTGTAGCTTTGACTGAAAAGCATGCAAGCATCGAGTGTAGTGATAAAATCATAATGCCTGCCTCAGCCCTTGACGTCCTTTCGTCTCTACAGATTGATTATCCGATGTCGTTCGAGTTCCGGCCATATTATTTTGATGATGCCAAGAACAATGAGAGTGAGAGATTTCGTGTCTCTCATTGTGGGGTTTGGGAGTTCACTGCAGAAGAAGGCTTTGTCTACATGCCTAACTGGATGATGGAGAACATGCACTTGAAAGAGGGGGAACTTGTGTTGCTGCAAAACAAGACTCTTCCGAAAGGCACCCATGTTAAGCTGCAGCCTCATACAATGGACTTCTTGGACATCCCTGACCCGAAAGCTATGTTGGAGGCGGCACTCGGCAAGTTTTCATGTTTGACAACTGGGGATACTATTGTGCTGCCTTATGGGAACAAGAAGTTTTATATGGATGTCATTGAAACAAAGCCTTCTGATGCAATAGGCATTATCGACACAGACTGTGAGGTTGACTTTGCACCTCCTCTTGACTATAAGGAACCTGAGAAGCCTGTAGCTGCATCAATTCCTCTGAACAAGGAAGCAGCTAGCCAAGTTGAGGAACCTAAGTTTAGCGCTTTTAAGGGAACTGGGAGGCGTTTGGATGGCAAGCCTCAGCAGTATGAACCAGCATTAGATTCTTCCTCATTCGTTGCAGCGAATGGTAATGCACAACCTTGTTCACGAGCTACAAGTCGCAGGGCTCAGGGGAAGCTTGTTTTTAGCACAGATGCCACCCCTACTGCTCCAAAGGTAGCATCCAAAGAGGTCAAACAACAGCAGCCGCTTCAAGAAAAAGAAGAGCCAAAGTTCCTAGCTTTTACCGGGAAAACGTACTCCCTAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0031347 GO:0031348 GO:0031984 GO:0032101 GO:0032102 GO:0032479 GO:0032480 GO:0032991 GO:0034098 GO:0036501 GO:0039531 GO:0039532 GO:0039535 GO:0039536 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045088 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050776 GO:0050789 GO:0050794 GO:0051117 GO:0051239 GO:0051241 GO:0051603 GO:0065007 GO:0071704 GO:0080134 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UFD1

Protein Analysis

391

Amino Acids

43.93

Weight (kDa)

4.47

Isoelectric Point (pI)

52.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UFD1_N1	PF03152	89 - 194	9.4e-30	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 1
UFD1_N2	PF24842	195 - 270	2.1e-31	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23530
rosa_chinensis	RchiOBHm_Chr7g0212281 RchiOBHm_Chr7g0212841
rosa_laevigata	RLG00000002866 RLG00000002899
rosa_multiflora	Rmu_sc0000394.1_g000048 Rmu_sc0001911.1_g000048 Rmu_sc0013698.1_g000013 Rmu_sc0042115.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246520 Rroxscaffold_3G00246930
rosa_rugosa	Rorug07G0133300 Rorug07G0136900
rosa_samantha	Rh7AG265900 Rh7AG268500 Rh7BG264100 Rh7CG282800 Rh7CG287500 Rh7DG272800 Rh7DG276600
rosa_wichuraiana	Rw7G023200 Rw7G023320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	363
AccB1I	GGYRCC	1 cut(s)	587
AccI	GTMKAC	1 cut(s)	504
AciI	CCGC	3 cut(s)	234, 659, 1109
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	2 cut(s)	235, 407
AcyI	GRCGYC	1 cut(s)	360
AfaI	GTAC	1 cut(s)	1160
AfeI	AGCGCT	1 cut(s)	901
AfiI	CCNNNNNNNGG	2 cut(s)	230, 883
AgsI	TTSAA	4 cut(s)	137, 541, 746, 1115
AjuI	GAANNNNNNNTTGG	2 cut(s)	635, 667
AluBI	AGCT	8 cut(s)	293, 601, 647, 842, 872, 1013, 1039, 1142
AluI	AGCT	8 cut(s)	293, 601, 647, 842, 872, 1013, 1039, 1142
Alw21I	GWGCWC	2 cut(s)	174, 222
Alw26I	GTCTC	3 cut(s)	93, 375, 463
Alw44I	GTGCAC	1 cut(s)	218
AlwI	GGATC	1 cut(s)	12
Aor51HI	AGCGCT	1 cut(s)	901
AoxI	GGCC	2 cut(s)	235, 407
ApaLI	GTGCAC	1 cut(s)	218
ApeKI	GCWGC	8 cut(s)	562, 601, 604, 706, 842, 869, 980, 1105
ArsI	GACNNNNNNTTYG	2 cut(s)	116, 148
AspLEI	GCGC	1 cut(s)	902
AsuC2I	CCSGG	1 cut(s)	1150
AsuHPI	GGTGA	1 cut(s)	86
AsuNHI	GCTAGC	1 cut(s)	872
AxyI	CCTNAGG	1 cut(s)	225
BaeGI	GKGCMC	1 cut(s)	222
BaeI	ACNNNNGTAYC	2 cut(s)	687, 720
BanI	GGYRCC	1 cut(s)	587
BanII	GRGCYC	1 cut(s)	1030
BauI	CACGAG	1 cut(s)	1008
Bbv12I	GWGCWC	2 cut(s)	174, 222
BbvCI	CCTCAGC	2 cut(s)	349, 939
BbvI	GCAGC	8 cut(s)	549, 588, 616, 693, 829, 881, 992, 1117
BccI	CCATC	4 cut(s)	160, 224, 517, 923
BciVI	GTATCC	1 cut(s)	688
BcnI	CCSGG	1 cut(s)	1150
BcoDI	GTCTC	3 cut(s)	93, 375, 463
BfaI	CTAG	2 cut(s)	873, 1139
BfmI	CTRYAG	5 cut(s)	288, 374, 486, 602, 837
BfoI	RGCGCY	1 cut(s)	903
BfuI	GTATCC	1 cut(s)	688
Bme1390I	CCNGG	1 cut(s)	1150
BmiI	GGNNCC	3 cut(s)	589, 825, 888
BmrFI	CCNGG	1 cut(s)	1150
BmrI	ACTGGG	2 cut(s)	699, 924
BmsI	GCATC	6 cut(s)	324, 415, 751, 854, 1045, 1091
BmtI	GCTAGC	1 cut(s)	876
BmuI	ACTGGG	2 cut(s)	699, 924
Bpu10I	CCTNAGC	3 cut(s)	349, 939, 1029
BpuMI	CCSGG	1 cut(s)	1150
BsaHI	GRCGYC	1 cut(s)	360
BsaI	GGTCTC	1 cut(s)	93
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 883
Bse1I	ACTGG	3 cut(s)	521, 694, 919
Bse21I	CCTNAGG	1 cut(s)	225
BseLI	CCNNNNNNNGG	2 cut(s)	230, 883
BseMII	CTCAG	5 cut(s)	216, 363, 819, 953, 1043
BseNI	ACTGG	3 cut(s)	521, 694, 919
BseRI	GAGGAG	1 cut(s)	798
BseSI	GKGCMC	1 cut(s)	222
BseXI	GCAGC	8 cut(s)	549, 588, 616, 693, 829, 881, 992, 1117
BshFI	GGCC	2 cut(s)	237, 409
BshNI	GGYRCC	1 cut(s)	587
BsiHKAI	GWGCWC	2 cut(s)	174, 222
BsiSI	CCGG	2 cut(s)	406, 1149
BslFI	GGGAC	1 cut(s)	265
BslI	CCNNNNNNNGG	2 cut(s)	230, 883
BsmAI	GTCTC	3 cut(s)	93, 375, 463
BsmBI	CGTCTC	1 cut(s)	375
BsmFI	GGGAC	1 cut(s)	265
BsnI	GGCC	2 cut(s)	237, 409
Bso31I	GGTCTC	1 cut(s)	93
Bsp1286I	GDGCHC	3 cut(s)	174, 222, 1030
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	3 cut(s)	234, 659, 1109
BspANI	GGCC	2 cut(s)	237, 409
BspCNI	CTCAG	5 cut(s)	217, 362, 820, 952, 1042
BspLI	GGNNCC	3 cut(s)	589, 825, 888
BspMAI	CTGCAG	2 cut(s)	490, 606
BspOI	GCTAGC	1 cut(s)	876
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	1119
BspT107I	GGYRCC	1 cut(s)	587
BspTNI	GGTCTC	1 cut(s)	93
BsrI	ACTGG	3 cut(s)	521, 694, 919
BssMI	GATC	1 cut(s)	4
BssNI	GRCGYC	1 cut(s)	360
BssSI	CACGAG	1 cut(s)	1008
Bst2BI	CACGAG	1 cut(s)	1008
Bst4CI	ACNGT	1 cut(s)	788
Bst6I	CTCTTC	2 cut(s)	582, 1119
BstACI	GRCGYC	1 cut(s)	360
BstC8I	GCNNGC	5 cut(s)	309, 313, 345, 874, 935
BstDEI	CTNAG	6 cut(s)	225, 349, 828, 891, 939, 1029
BstH2I	RGCGCY	1 cut(s)	903
BstHHI	GCGC	1 cut(s)	902
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	3 cut(s)	93, 375, 463
BstMBI	GATC	1 cut(s)	4
BstNSI	RCATGY	3 cut(s)	311, 511, 535
BstSCI	CCNGG	1 cut(s)	1148
BstSFI	CTRYAG	5 cut(s)	288, 374, 486, 602, 837
BstSLI	GKGCMC	1 cut(s)	222
BstV1I	GCAGC	8 cut(s)	549, 588, 616, 693, 829, 881, 992, 1117
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
Bsu36I	CCTNAGG	1 cut(s)	225
BsuI	GTATCC	1 cut(s)	688
BsuRI	GGCC	2 cut(s)	237, 409
BtsI	GCAGTG	1 cut(s)	483
BtsIMutI	CAGTG	1 cut(s)	483
Cac8I	GCNNGC	5 cut(s)	309, 313, 345, 874, 935
CfoI	GCGC	1 cut(s)	902
Csp6I	GTAC	1 cut(s)	1159
CviAII	CATG	7 cut(s)	67, 239, 308, 508, 532, 593, 678
CviQI	GTAC	1 cut(s)	1159
DdeI	CTNAG	6 cut(s)	225, 349, 828, 891, 939, 1029
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
EaeI	YGGCCR	2 cut(s)	235, 407
Eam1104I	CTCTTC	2 cut(s)	582, 1119
EarI	CTCTTC	2 cut(s)	582, 1119
Eco24I	GRGCYC	1 cut(s)	1030
Eco31I	GGTCTC	1 cut(s)	93
Eco47III	AGCGCT	1 cut(s)	901
Eco81I	CCTNAGG	1 cut(s)	225
EcoT38I	GRGCYC	1 cut(s)	1030
Esp3I	CGTCTC	1 cut(s)	375
FaeI	CATG	7 cut(s)	70, 242, 311, 511, 535, 596, 681
FaqI	GGGAC	1 cut(s)	265
FatI	CATG	7 cut(s)	66, 238, 307, 507, 531, 592, 677
FblI	GTMKAC	1 cut(s)	504
FriOI	GRGCYC	1 cut(s)	1030
FspBI	CTAG	2 cut(s)	873, 1139
GlaI	GCGC	1 cut(s)	901
HaeII	RGCGCY	1 cut(s)	903
HaeIII	GGCC	2 cut(s)	237, 409
HapII	CCGG	2 cut(s)	406, 1149
HhaI	GCGC	1 cut(s)	902
Hin1I	GRCGYC	1 cut(s)	360
Hin1II	CATG	7 cut(s)	70, 242, 311, 511, 535, 596, 681
Hin6I	GCGC	1 cut(s)	900
HinP1I	GCGC	1 cut(s)	900
HincII	GTYRAC	1 cut(s)	796
HindII	GTYRAC	1 cut(s)	796
HindIII	AAGCTT	1 cut(s)	1037
HinfI	GANTC	4 cut(s)	29, 142, 574, 962
HpaII	CCGG	2 cut(s)	406, 1149
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	5 cut(s)	220, 483, 505, 796, 1007
Hpy188I	TCNGA	8 cut(s)	9, 34, 64, 178, 390, 582, 760, 858
Hpy188III	TCNNGA	3 cut(s)	812, 1008, 1115
Hpy8I	GTNNAC	5 cut(s)	220, 483, 505, 796, 1007
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	3 cut(s)	122, 488, 765
HpyCH4III	ACNGT	1 cut(s)	788
HpyCH4IV	ACGT	2 cut(s)	360, 1157
HpyF3I	CTNAG	6 cut(s)	225, 349, 828, 891, 939, 1029
HpySE526I	ACGT	2 cut(s)	360, 1157
Hsp92I	GRCGYC	1 cut(s)	360
Hsp92II	CATG	7 cut(s)	70, 242, 311, 511, 535, 596, 681
HspAI	GCGC	1 cut(s)	900
Kzo9I	GATC	1 cut(s)	4
LguI	GCTCTTC	1 cut(s)	1119
LmnI	GCTCC	2 cut(s)	169, 1075
Lsp1109I	GCAGC	8 cut(s)	549, 588, 616, 693, 829, 881, 992, 1117
LweI	GCATC	6 cut(s)	324, 415, 751, 854, 1045, 1091
MaeI	CTAG	2 cut(s)	873, 1139
MaeII	ACGT	2 cut(s)	360, 1157
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	7 cut(s)	38, 128, 194, 503, 569, 957, 1136
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	3 cut(s)	174, 222, 1030
MluCI	AATT	1 cut(s)	849
MlyI	GAGTC	2 cut(s)	151, 568
MmeI	TCCRAC	2 cut(s)	87, 633
MseI	TTAA	2 cut(s)	597, 906
MslI	CAYNNNNRTG	2 cut(s)	177, 243
MspI	CCGG	2 cut(s)	406, 1149
MspR9I	CCNGG	1 cut(s)	1150
NciI	CCSGG	1 cut(s)	1150
NdeII	GATC	1 cut(s)	4
NheI	GCTAGC	1 cut(s)	872
NlaIII	CATG	7 cut(s)	70, 242, 311, 511, 535, 596, 681
NlaIV	GGNNCC	3 cut(s)	589, 825, 888
NmeAIII	GCCGAG	1 cut(s)	645
NspI	RCATGY	3 cut(s)	311, 511, 535
PaeI	GCATGC	1 cut(s)	311
PciSI	GCTCTTC	1 cut(s)	1119
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PfeI	GAWTC	2 cut(s)	29, 962
PleI	GAGTC	2 cut(s)	150, 568
PpsI	GAGTC	2 cut(s)	150, 568
PspN4I	GGNNCC	3 cut(s)	589, 825, 888
PstI	CTGCAG	2 cut(s)	490, 606
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	1160
RsaNI	GTAC	1 cut(s)	1159
RseI	CAYNNNNRTG	2 cut(s)	177, 243
SapI	GCTCTTC	1 cut(s)	1119
SaqAI	TTAA	2 cut(s)	597, 906
Sau3AI	GATC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	151, 568
ScrFI	CCNGG	1 cut(s)	1150
SduI	GDGCHC	3 cut(s)	174, 222, 1030
SfaNI	GCATC	6 cut(s)	324, 415, 751, 854, 1045, 1091
SfcI	CTRYAG	5 cut(s)	288, 374, 486, 602, 837
SmiMI	CAYNNNNRTG	2 cut(s)	177, 243
SphI	GCATGC	1 cut(s)	311
Sse9I	AATT	1 cut(s)	849
SsiI	CCGC	3 cut(s)	234, 659, 1109
SspMI	CTAG	2 cut(s)	873, 1139
StyD4I	CCNGG	1 cut(s)	1148
TaaI	ACNGT	1 cut(s)	788
TaiI	ACGT	2 cut(s)	363, 1160
TaqI	TCGA	3 cut(s)	318, 399, 777
TasI	AATT	1 cut(s)	849
TauI	GCSGC	3 cut(s)	237, 662, 1111
TfiI	GAWTC	2 cut(s)	29, 962
Tru1I	TTAA	2 cut(s)	597, 906
Tru9I	TTAA	2 cut(s)	597, 906
TscAI	CASTG	1 cut(s)	490
TseI	GCWGC	8 cut(s)	562, 601, 604, 706, 842, 869, 980, 1105
TspDTI	ATGAA	7 cut(s)	27, 129, 174, 195, 222, 666, 963
TspRI	CASTG	1 cut(s)	490
VneI	GTGCAC	1 cut(s)	218
XceI	RCATGY	3 cut(s)	311, 511, 535
XcmI	CCANNNNNNNNNTGG	1 cut(s)	245
XmiI	GTMKAC	1 cut(s)	504
XspI	CTAG	2 cut(s)	873, 1139
ZraI	GACGTC	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.