Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0009690

Physical Location & Seq

Genomic Coordinates Reverse (-)

28741601 .. 28742331

Gene Structure 731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG282800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAAAACAAGTACTATGGATGTCATTGAAACAAAGCCTTCTAATGCCATAGGCATTACAGACAGAGACTGTGAGGTTGACTTTGCACCGTCTCTTGACTCTAAGGAACCCAAAAAGCCTGTTGATGCAGCATCTGTTCCGATAAACAAGGTGGCATCAGCTGATGATCAAGTTGTGGAACCTAAATTCAGCGCTTTTACCGGAGCTGGGAGGCGGTTGGATGGCAAGCCTTTGCAGTATGAGCCAGCAGCAGCTATTGCTTCTTCATTTGTCACCGCCACCAACAATAATGCACAACCTTCTAGAGGATATAGTTCATCACAAGCTACCAGTCATGCCAATGGTACACCAAAGGAAGCTGCAAAGCAAGAAGAGCCAAAGTTGCAGCCTTTAACAGGGAAAATGTACTCACTAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0031347 GO:0031348 GO:0031984 GO:0032101 GO:0032102 GO:0032479 GO:0032480 GO:0032991 GO:0034098 GO:0036501 GO:0039531 GO:0039532 GO:0039535 GO:0039536 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045088 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050776 GO:0050789 GO:0050794 GO:0051117 GO:0051239 GO:0051241 GO:0051603 GO:0065007 GO:0071704 GO:0080134 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UFD1

Protein Analysis

139

Amino Acids

14.77

Weight (kDa)

6.58

Isoelectric Point (pI)

44.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23530
rosa_chinensis	RchiOBHm_Chr7g0212281 RchiOBHm_Chr7g0212841
rosa_laevigata	RLG00000002866 RLG00000002899
rosa_multiflora	Rmu_sc0000394.1_g000048 Rmu_sc0001911.1_g000048 Rmu_sc0013698.1_g000013 Rmu_sc0042115.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246520 Rroxscaffold_3G00246930
rosa_rugosa	Rorug07G0133300 Rorug07G0136900
rosa_samantha	Rh7AG265900 Rh7AG268500 Rh7BG264100 Rh7CG282800 Rh7CG287500 Rh7DG272800 Rh7DG276600
rosa_wichuraiana	Rw7G023200 Rw7G023320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	214, 276
AcsI	RAATTY	1 cut(s)	185
AfaI	GTAC	3 cut(s)	13, 346, 407
AfeI	AGCGCT	1 cut(s)	193
AfiI	CCNNNNNNNGG	3 cut(s)	207, 305, 395
AgsI	TTSAA	1 cut(s)	29
AluBI	AGCT	5 cut(s)	161, 206, 254, 326, 359
AluI	AGCT	5 cut(s)	161, 206, 254, 326, 359
Alw26I	GTCTC	2 cut(s)	60, 96
AlwNI	CAGNNNCTG	2 cut(s)	69, 134
Aor51HI	AGCGCT	1 cut(s)	193
ApeKI	GCWGC	5 cut(s)	128, 248, 251, 359, 385
ApoI	RAATTY	1 cut(s)	185
AspLEI	GCGC	1 cut(s)	194
AsuHPI	GGTGA	1 cut(s)	265
BbvI	GCAGC	5 cut(s)	140, 260, 263, 346, 397
BccI	CCATC	1 cut(s)	215
BclI	TGATCA	1 cut(s)	166
BcoDI	GTCTC	2 cut(s)	60, 96
BfaI	CTAG	1 cut(s)	303
BfoI	RGCGCY	1 cut(s)	195
BisI	GCNGC	5 cut(s)	129, 249, 252, 360, 386
BlsI	GCNGC	5 cut(s)	130, 250, 253, 361, 387
BmcAI	AGTACT	1 cut(s)	13
BmiI	GGNNCC	2 cut(s)	108, 180
BmsI	GCATC	3 cut(s)	115, 140, 164
BsaWI	WCCGGW	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	3 cut(s)	207, 305, 395
Bse1I	ACTGG	1 cut(s)	330
BseGI	GGATG	2 cut(s)	25, 226
BseLI	CCNNNNNNNGG	3 cut(s)	207, 305, 395
BseNI	ACTGG	1 cut(s)	330
BseXI	GCAGC	5 cut(s)	140, 260, 263, 346, 397
BseYI	CCCAGC	1 cut(s)	206
BsiSI	CCGG	1 cut(s)	201
BslI	CCNNNNNNNGG	3 cut(s)	207, 305, 395
BsmAI	GTCTC	2 cut(s)	60, 96
BsmBI	CGTCTC	1 cut(s)	96
Bsp143I	GATC	1 cut(s)	166
BspACI	CCGC	2 cut(s)	214, 276
BspLI	GGNNCC	2 cut(s)	108, 180
BspQI	GCTCTTC	1 cut(s)	366
BsrI	ACTGG	1 cut(s)	330
BssMI	GATC	1 cut(s)	166
Bst4CI	ACNGT	2 cut(s)	71, 90
Bst6I	CTCTTC	1 cut(s)	366
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstC8I	GCNNGC	2 cut(s)	227, 246
BstDEI	CTNAG	2 cut(s)	102, 413
BstENI	CCTNNNNNAGG	2 cut(s)	303, 393
BstF5I	GGATG	2 cut(s)	25, 226
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	1 cut(s)	169
BstMAI	GTCTC	2 cut(s)	60, 96
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	4 cut(s)	241, 257, 373, 382
BstV1I	GCAGC	5 cut(s)	140, 260, 263, 346, 397
BtsCI	GGATG	2 cut(s)	25, 226
Cac8I	GCNNGC	2 cut(s)	227, 246
CaiI	CAGNNNCTG	2 cut(s)	69, 134
CfoI	GCGC	1 cut(s)	194
Csp6I	GTAC	3 cut(s)	12, 345, 406
CviAII	CATG	1 cut(s)	335
CviQI	GTAC	3 cut(s)	12, 345, 406
DdeI	CTNAG	2 cut(s)	102, 413
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Eco47III	AGCGCT	1 cut(s)	193
EcoNI	CCTNNNNNAGG	2 cut(s)	303, 393
Esp3I	CGTCTC	1 cut(s)	96
FaeI	CATG	1 cut(s)	338
FaiI	YATR	5 cut(s)	17, 50, 240, 312, 336
FatI	CATG	1 cut(s)	334
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	5 cut(s)	129, 249, 252, 360, 386
FokI	GGATG	2 cut(s)	32, 233
Fsp4HI	GCNGC	5 cut(s)	129, 249, 252, 360, 386
FspBI	CTAG	1 cut(s)	303
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	5 cut(s)	129, 249, 252, 360, 386
GsaI	CCCAGC	1 cut(s)	210
HaeII	RGCGCY	1 cut(s)	195
HapII	CCGG	1 cut(s)	201
HhaI	GCGC	1 cut(s)	194
Hin1II	CATG	1 cut(s)	338
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	1 cut(s)	98
HpaII	CCGG	1 cut(s)	201
HphI	GGTGA	1 cut(s)	265
Hpy166II	GTNNAC	2 cut(s)	79, 347
Hpy188I	TCNGA	1 cut(s)	141
Hpy188III	TCNNGA	2 cut(s)	95, 303
Hpy8I	GTNNAC	2 cut(s)	79, 347
HpyAV	CCTTC	2 cut(s)	48, 309
HpyCH4III	ACNGT	2 cut(s)	71, 90
HpyCH4V	TGCA	6 cut(s)	86, 128, 235, 293, 362, 385
HpyF10VI	GCNNNNNNNGC	4 cut(s)	241, 257, 373, 382
HpyF3I	CTNAG	2 cut(s)	102, 413
Hsp92II	CATG	1 cut(s)	338
HspAI	GCGC	1 cut(s)	192
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	166
LguI	GCTCTTC	1 cut(s)	366
LmnI	GCTCC	1 cut(s)	203
LpnPI	CCDG	6 cut(s)	132, 192, 214, 258, 343, 381
Lsp1109I	GCAGC	5 cut(s)	140, 260, 263, 346, 397
LweI	GCATC	3 cut(s)	115, 140, 164
MaeI	CTAG	1 cut(s)	303
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	2 cut(s)	255, 383
MluCI	AATT	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	3 cut(s)	67, 204, 299
MseI	TTAA	1 cut(s)	392
MslI	CAYNNNNRTG	1 cut(s)	339
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	1 cut(s)	201
MwoI	GCNNNNNNNGC	4 cut(s)	241, 257, 373, 382
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	1 cut(s)	338
NlaIV	GGNNCC	2 cut(s)	108, 180
NmuCI	GTSAC	1 cut(s)	271
PciSI	GCTCTTC	1 cut(s)	366
PkrI	GCNGC	5 cut(s)	130, 250, 253, 361, 387
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
PspFI	CCCAGC	1 cut(s)	206
PspN4I	GGNNCC	2 cut(s)	108, 180
PstNI	CAGNNNCTG	2 cut(s)	69, 134
PvuII	CAGCTG	1 cut(s)	161
RsaI	GTAC	3 cut(s)	13, 346, 407
RsaNI	GTAC	3 cut(s)	12, 345, 406
RseI	CAYNNNNRTG	1 cut(s)	339
SapI	GCTCTTC	1 cut(s)	366
SaqAI	TTAA	1 cut(s)	392
SatI	GCNGC	5 cut(s)	129, 249, 252, 360, 386
Sau3AI	GATC	1 cut(s)	166
ScaI	AGTACT	1 cut(s)	13
SchI	GAGTC	1 cut(s)	92
SetI	ASST	9 cut(s)	78, 153, 163, 184, 208, 256, 301, 328, 361
SfaNI	GCATC	3 cut(s)	115, 140, 164
SmiMI	CAYNNNNRTG	1 cut(s)	339
Sse9I	AATT	1 cut(s)	185
SsiI	CCGC	2 cut(s)	214, 276
SspMI	CTAG	1 cut(s)	303
TaaI	ACNGT	2 cut(s)	71, 90
TasI	AATT	1 cut(s)	185
TatI	WGTACW	2 cut(s)	11, 405
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	5 cut(s)	128, 248, 251, 359, 385
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	3 cut(s)	17, 255, 306
XagI	CCTNNNNNAGG	2 cut(s)	303, 393
XapI	RAATTY	1 cut(s)	185
XbaI	TCTAGA	1 cut(s)	302
XspI	CTAG	1 cut(s)	303
ZrmI	AGTACT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.