Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0009690

Physical Location & Seq

Genomic Coordinates Forward (+)

27963337 .. 27964464

Gene Structure 1128 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G023320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGATTTGAATGAAAACGGGAGTTATGATTCTGACCAGACTACATACTACTCCGCTGACTCCGGCATGAGTGATGATGACATGGGATTTGAGGATGATAAAGCTTACGAGGTAGGTTCTGACATGAGTATTACTGATGGGGATGGTGAGATAGGGCACTCTGAGCCCAGTTATGGCGGCCATGAATATGATGATTTTGTTGGCACGACACCGTTTTGGCATAGGTATCATTGTTATCCTGCATCTAAAACTGAAAAGCATGCATACACTGAGAGTAGTGATAAAATCATAATGCCTCCCTCAGCCCTCGACGTCCTTGCTTCTCTAAACATTGGTTATCCAATGTTGTTCGAGTTCCGGCCATATTCTTTTGATGCTGCCGAGAATAATGAGACTGAGAAATTTCGTGTCTCTCATTGTGGGGTTTGGGAGTTCACTGCAGAAGAAGGCTTTGTCTACATGCCAAATTGGATGATGGAAAATATGAACTTGAAAGAGGGAGACCTTGTGCTGCTTCAAAACCAGACTCTTCCGAAAGGCAGTCATGTCAAATTGCAGCCTCATACAAAGGACTTCTTGGACATCCCTGACCCAAAAGCTATGTTGGAGGCGGCTCTCGGGACGTTTTCTTGTTTAACAACTGGGGATACTATTGTGCTACCTTATGAGAACAAGAAGTATTATATGGATATCATTGAAACAAAGCCTTCTGATGCCATAGGCATTATTGACACAGATTGTGAGGTTGACTTTGCACCTCCTCTTGACTATAAGGAACCTGAGAAACCTGTTGCTTCATCAATTCCTCTGAACAAGGAAGCAGATGGCCAAGTTGACGAACCTAAATTCAGCCCTTTTAAGGGAACTGGGAGGCGTTTGGATGGCAAGCCTTTGCAGTATGAGTCAGCATTAGATTCTTCCTCATTTGTTGCCGCGAATGGTAATCCACAACCTTGTACAGAATCTAGTTCACGAGCTACTAAACGCCGGGCTCAAGGGAAGCTTGTTTTTGGCGCAAATACTGCTCCAAAGGTAGCCTCAAAAGAGGTCAAACAACAGCAGCAGCTCCAAGAGAAAGAAGAGCCAAAGTTCCTGGCTTTTACTGGGAAAATGTACTCCCTAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0031347 GO:0031348 GO:0031984 GO:0032101 GO:0032102 GO:0032479 GO:0032480 GO:0032991 GO:0034098 GO:0036501 GO:0039531 GO:0039532 GO:0039535 GO:0039536 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045088 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050776 GO:0050789 GO:0050794 GO:0051117 GO:0051239 GO:0051241 GO:0051603 GO:0065007 GO:0071704 GO:0080134 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UFD1

Protein Analysis

375

Amino Acids

41.84

Weight (kDa)

4.59

Isoelectric Point (pI)

49.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UFD1_N1	PF03152	74 - 178	3.8e-30	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 1
UFD1_N2	PF24842	179 - 254	1.3e-31	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0009690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23530
rosa_chinensis	RchiOBHm_Chr7g0212281 RchiOBHm_Chr7g0212841
rosa_laevigata	RLG00000002866 RLG00000002899
rosa_multiflora	Rmu_sc0000394.1_g000048 Rmu_sc0001911.1_g000048 Rmu_sc0013698.1_g000013 Rmu_sc0042115.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246520 Rroxscaffold_3G00246930
rosa_rugosa	Rorug07G0133300 Rorug07G0136900
rosa_samantha	Rh7AG265900 Rh7AG268500 Rh7BG264100 Rh7CG282800 Rh7CG287500 Rh7DG272800 Rh7DG276600
rosa_wichuraiana	Rw7G023200 Rw7G023320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	315
AccI	GTMKAC	1 cut(s)	456
AccII	CGCG	1 cut(s)	935
AciI	CCGC	4 cut(s)	54, 177, 611, 933
AcoI	YGGCCR	3 cut(s)	178, 359, 826
AcsI	RAATTY	2 cut(s)	401, 845
AcyI	GRCGYC	1 cut(s)	312
AfaI	GTAC	2 cut(s)	958, 1115
AfiI	CCNNNNNNNGG	3 cut(s)	173, 859, 860
AgsI	TTSAA	4 cut(s)	10, 493, 518, 698
AjnI	CCWGG	1 cut(s)	1092
AluBI	AGCT	5 cut(s)	104, 599, 977, 1003, 1066
AluI	AGCT	5 cut(s)	104, 599, 977, 1003, 1066
Alw26I	GTCTC	3 cut(s)	386, 415, 495
Ama87I	CYCGRG	1 cut(s)	617
AoxI	GGCC	3 cut(s)	178, 359, 826
ApeKI	GCWGC	5 cut(s)	377, 511, 556, 1060, 1063
ApoI	RAATTY	2 cut(s)	401, 845
ArsI	GACNNNNNNTTYG	2 cut(s)	71, 103
AspLEI	GCGC	1 cut(s)	1016
AsuC2I	CCSGG	1 cut(s)	989
AsuHPI	GGTGA	1 cut(s)	158
AvaI	CYCGRG	1 cut(s)	617
BaeGI	GKGCMC	1 cut(s)	159
BaeI	ACNNNNGTAYC	2 cut(s)	639, 672
BalI	TGGCCA	1 cut(s)	828
BanII	GRGCYC	2 cut(s)	168, 994
BauI	CACGAG	1 cut(s)	972
BbvCI	CCTCAGC	1 cut(s)	301
BbvI	GCAGC	5 cut(s)	364, 498, 568, 1072, 1075
BccI	CCATC	5 cut(s)	131, 137, 469, 818, 875
BcgI	CGANNNNNNTGC	2 cut(s)	299, 333
BciT130I	CCWGG	1 cut(s)	1094
BciVI	GTATCC	1 cut(s)	640
BcnI	CCSGG	1 cut(s)	989
BcoDI	GTCTC	3 cut(s)	386, 415, 495
BfaI	CTAG	1 cut(s)	966
BfmI	CTRYAG	1 cut(s)	438
BfuI	GTATCC	1 cut(s)	640
BisI	GCNGC	8 cut(s)	178, 378, 512, 557, 612, 933, 1061, 1064
BlsI	GCNGC	8 cut(s)	179, 379, 513, 558, 613, 934, 1062, 1065
Bme1390I	CCNGG	2 cut(s)	989, 1094
BmeT110I	CYCGRG	1 cut(s)	617
BmiI	GGNNCC	1 cut(s)	777
BmrFI	CCNGG	2 cut(s)	989, 1094
BmrI	ACTGGG	4 cut(s)	162, 651, 876, 1113
BmsI	GCATC	3 cut(s)	251, 364, 703
BmuI	ACTGGG	4 cut(s)	162, 651, 876, 1113
Bpu10I	CCTNAGC	1 cut(s)	301
BpuEI	CTTGAG	1 cut(s)	978
BpuMI	CCSGG	1 cut(s)	989
BsaHI	GRCGYC	1 cut(s)	312
BsaI	GGTCTC	1 cut(s)	495
BsaXI	ACNNNNNCTCC	2 cut(s)	492, 522
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 859, 860
Bse1I	ACTGG	4 cut(s)	168, 646, 871, 1108
BseBI	CCWGG	1 cut(s)	1094
BseGI	GGATG	5 cut(s)	100, 148, 477, 582, 886
BseLI	CCNNNNNNNGG	3 cut(s)	173, 859, 860
BseMII	CTCAG	5 cut(s)	153, 261, 315, 387, 771
BseNI	ACTGG	4 cut(s)	168, 646, 871, 1108
BseRI	GAGGAG	1 cut(s)	750
BseSI	GKGCMC	1 cut(s)	159
BseXI	GCAGC	5 cut(s)	364, 498, 568, 1072, 1075
Bsh1236I	CGCG	1 cut(s)	935
BshFI	GGCC	3 cut(s)	180, 361, 828
BsiHKCI	CYCGRG	1 cut(s)	617
BsiSI	CCGG	3 cut(s)	63, 358, 988
BslFI	GGGAC	1 cut(s)	634
BslI	CCNNNNNNNGG	3 cut(s)	173, 859, 860
BsmAI	GTCTC	3 cut(s)	386, 415, 495
BsmFI	GGGAC	1 cut(s)	634
BsnI	GGCC	3 cut(s)	180, 361, 828
Bso31I	GGTCTC	1 cut(s)	495
BsoBI	CYCGRG	1 cut(s)	617
Bsp1286I	GDGCHC	3 cut(s)	159, 168, 994
Bsp1407I	TGTACA	1 cut(s)	956
BspACI	CCGC	4 cut(s)	54, 177, 611, 933
BspANI	GGCC	3 cut(s)	180, 361, 828
BspCNI	CTCAG	5 cut(s)	154, 262, 314, 388, 772
BspFNI	CGCG	1 cut(s)	935
BspLI	GGNNCC	1 cut(s)	777
BspMAI	CTGCAG	1 cut(s)	442
BspQI	GCTCTTC	1 cut(s)	1074
BspTNI	GGTCTC	1 cut(s)	495
BsrGI	TGTACA	1 cut(s)	956
BsrI	ACTGG	4 cut(s)	168, 646, 871, 1108
BssNI	GRCGYC	1 cut(s)	312
BssSI	CACGAG	1 cut(s)	972
Bst2BI	CACGAG	1 cut(s)	972
Bst2UI	CCWGG	1 cut(s)	1094
Bst4CI	ACNGT	1 cut(s)	213
Bst6I	CTCTTC	2 cut(s)	534, 1074
BstACI	GRCGYC	1 cut(s)	312
BstAPI	GCANNNNNTGC	1 cut(s)	1022
BstAUI	TGTACA	1 cut(s)	956
BstC8I	GCNNGC	2 cut(s)	261, 887
BstDEI	CTNAG	5 cut(s)	162, 270, 301, 396, 780
BstF5I	GGATG	5 cut(s)	100, 148, 477, 582, 886
BstFNI	CGCG	1 cut(s)	935
BstHHI	GCGC	1 cut(s)	1016
BstMAI	GTCTC	3 cut(s)	386, 415, 495
BstMWI	GCNNNNNNNGC	2 cut(s)	163, 1022
BstNI	CCWGG	1 cut(s)	1094
BstNSI	RCATGY	2 cut(s)	263, 463
BstSCI	CCNGG	2 cut(s)	987, 1092
BstSFI	CTRYAG	1 cut(s)	438
BstSLI	GKGCMC	1 cut(s)	159
BstUI	CGCG	1 cut(s)	935
BstV1I	GCAGC	5 cut(s)	364, 498, 568, 1072, 1075
BsuI	GTATCC	1 cut(s)	640
BsuRI	GGCC	3 cut(s)	180, 361, 828
BtsCI	GGATG	5 cut(s)	100, 148, 477, 582, 886
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	2 cut(s)	267, 435
Cac8I	GCNNGC	2 cut(s)	261, 887
CfoI	GCGC	1 cut(s)	1016
Csp6I	GTAC	2 cut(s)	957, 1114
CviAII	CATG	7 cut(s)	67, 82, 124, 182, 260, 460, 545
CviQI	GTAC	2 cut(s)	957, 1114
DdeI	CTNAG	5 cut(s)	162, 270, 301, 396, 780
EaeI	YGGCCR	3 cut(s)	178, 359, 826
Eam1104I	CTCTTC	2 cut(s)	534, 1074
EarI	CTCTTC	2 cut(s)	534, 1074
Eco24I	GRGCYC	2 cut(s)	168, 994
Eco31I	GGTCTC	1 cut(s)	495
Eco32I	GATATC	1 cut(s)	691
Eco88I	CYCGRG	1 cut(s)	617
EcoRII	CCWGG	1 cut(s)	1092
EcoRV	GATATC	1 cut(s)	691
EcoT22I	ATGCAT	1 cut(s)	265
EcoT38I	GRGCYC	2 cut(s)	168, 994
FaeI	CATG	7 cut(s)	70, 85, 127, 185, 263, 463, 548
FalI	AAGNNNNNCTT	4 cut(s)	560, 592, 987, 1019
FaqI	GGGAC	1 cut(s)	634
FatI	CATG	7 cut(s)	66, 81, 123, 181, 259, 459, 544
FblI	GTMKAC	1 cut(s)	456
Fnu4HI	GCNGC	8 cut(s)	178, 378, 512, 557, 612, 933, 1061, 1064
FokI	GGATG	5 cut(s)	107, 155, 484, 569, 893
FriOI	GRGCYC	2 cut(s)	168, 994
Fsp4HI	GCNGC	8 cut(s)	178, 378, 512, 557, 612, 933, 1061, 1064
FspBI	CTAG	1 cut(s)	966
GlaI	GCGC	1 cut(s)	1015
GluI	GCNGC	8 cut(s)	178, 378, 512, 557, 612, 933, 1061, 1064
HaeIII	GGCC	3 cut(s)	180, 361, 828
HapII	CCGG	3 cut(s)	63, 358, 988
HhaI	GCGC	1 cut(s)	1016
Hin1I	GRCGYC	1 cut(s)	312
Hin1II	CATG	7 cut(s)	70, 85, 127, 185, 263, 463, 548
Hin6I	GCGC	1 cut(s)	1014
HinP1I	GCGC	1 cut(s)	1014
HincII	GTYRAC	2 cut(s)	748, 835
HindII	GTYRAC	2 cut(s)	748, 835
HindIII	AAGCTT	2 cut(s)	102, 1001
HinfI	GANTC	6 cut(s)	29, 59, 526, 902, 914, 962
HpaII	CCGG	3 cut(s)	63, 358, 988
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	5 cut(s)	435, 457, 748, 835, 971
Hpy188I	TCNGA	6 cut(s)	34, 121, 163, 534, 712, 810
Hpy188III	TCNNGA	3 cut(s)	619, 764, 972
Hpy8I	GTNNAC	5 cut(s)	435, 457, 748, 835, 971
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	2 cut(s)	440, 717
HpyCH4III	ACNGT	1 cut(s)	213
HpyCH4IV	ACGT	2 cut(s)	312, 623
HpyCH4V	TGCA	6 cut(s)	242, 263, 440, 556, 755, 895
HpyF10VI	GCNNNNNNNGC	2 cut(s)	163, 1022
HpyF3I	CTNAG	5 cut(s)	162, 270, 301, 396, 780
HpySE526I	ACGT	2 cut(s)	312, 623
Hsp92I	GRCGYC	1 cut(s)	312
Hsp92II	CATG	7 cut(s)	70, 85, 127, 185, 263, 463, 548
HspAI	GCGC	1 cut(s)	1014
LguI	GCTCTTC	1 cut(s)	1074
LmnI	GCTCC	2 cut(s)	1030, 1071
Lsp1109I	GCAGC	5 cut(s)	364, 498, 568, 1072, 1075
LweI	GCATC	3 cut(s)	251, 364, 703
MaeI	CTAG	1 cut(s)	966
MaeII	ACGT	2 cut(s)	312, 623
MboII	GAAGA	4 cut(s)	455, 521, 909, 1091
MhlI	GDGCHC	3 cut(s)	159, 168, 994
MlsI	TGGCCA	1 cut(s)	828
MluCI	AATT	5 cut(s)	401, 466, 551, 801, 845
MluNI	TGGCCA	1 cut(s)	828
MlyI	GAGTC	3 cut(s)	53, 520, 911
MmeI	TCCRAC	1 cut(s)	585
Mox20I	TGGCCA	1 cut(s)	828
Mph1103I	ATGCAT	1 cut(s)	265
MscI	TGGCCA	1 cut(s)	828
MseI	TTAA	2 cut(s)	635, 858
MslI	CAYNNNNRTG	1 cut(s)	186
Msp20I	TGGCCA	1 cut(s)	828
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	3 cut(s)	63, 358, 988
MspR9I	CCNGG	2 cut(s)	989, 1094
MvaI	CCWGG	1 cut(s)	1094
MvnI	CGCG	1 cut(s)	935
MwoI	GCNNNNNNNGC	2 cut(s)	163, 1022
NciI	CCSGG	1 cut(s)	989
NlaIII	CATG	7 cut(s)	70, 85, 127, 185, 263, 463, 548
NlaIV	GGNNCC	1 cut(s)	777
NmeAIII	GCCGAG	1 cut(s)	406
NsiI	ATGCAT	1 cut(s)	265
NspI	RCATGY	2 cut(s)	263, 463
PaeI	GCATGC	1 cut(s)	263
PciSI	GCTCTTC	1 cut(s)	1074
PfeI	GAWTC	3 cut(s)	29, 914, 962
PkrI	GCNGC	8 cut(s)	179, 379, 513, 558, 613, 934, 1062, 1065
PleI	GAGTC	3 cut(s)	53, 520, 910
PpsI	GAGTC	3 cut(s)	53, 520, 910
Psp6I	CCWGG	1 cut(s)	1092
PspGI	CCWGG	1 cut(s)	1092
PspN4I	GGNNCC	1 cut(s)	777
PstI	CTGCAG	1 cut(s)	442
RsaI	GTAC	2 cut(s)	958, 1115
RsaNI	GTAC	2 cut(s)	957, 1114
RseI	CAYNNNNRTG	1 cut(s)	186
SapI	GCTCTTC	1 cut(s)	1074
SaqAI	TTAA	2 cut(s)	635, 858
SatI	GCNGC	8 cut(s)	178, 378, 512, 557, 612, 933, 1061, 1064
SchI	GAGTC	3 cut(s)	53, 520, 911
ScrFI	CCNGG	2 cut(s)	989, 1094
SduI	GDGCHC	3 cut(s)	159, 168, 994
SfaNI	GCATC	3 cut(s)	251, 364, 703
SfcI	CTRYAG	1 cut(s)	438
SmiMI	CAYNNNNRTG	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	993
SmoI	CTYRAG	1 cut(s)	993
SphI	GCATGC	1 cut(s)	263
Sse9I	AATT	5 cut(s)	401, 466, 551, 801, 845
SsiI	CCGC	4 cut(s)	54, 177, 611, 933
SspMI	CTAG	1 cut(s)	966
StyD4I	CCNGG	2 cut(s)	987, 1092
TaaI	ACNGT	1 cut(s)	213
TaiI	ACGT	2 cut(s)	315, 626
TaqI	TCGA	2 cut(s)	309, 351
TasI	AATT	5 cut(s)	401, 466, 551, 801, 845
TatI	WGTACW	2 cut(s)	956, 1113
TauI	GCSGC	3 cut(s)	180, 614, 935
TfiI	GAWTC	3 cut(s)	29, 914, 962
Tru1I	TTAA	2 cut(s)	635, 858
Tru9I	TTAA	2 cut(s)	635, 858
TscAI	CASTG	2 cut(s)	274, 442
TseI	GCWGC	5 cut(s)	377, 511, 556, 1060, 1063
TspDTI	ATGAA	4 cut(s)	27, 198, 500, 786
TspRI	CASTG	2 cut(s)	274, 442
XapI	RAATTY	2 cut(s)	401, 845
XceI	RCATGY	2 cut(s)	263, 463
XmiI	GTMKAC	1 cut(s)	456
XspI	CTAG	1 cut(s)	966
ZraI	GACGTC	1 cut(s)	313
Zsp2I	ATGCAT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.