Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0009690

Physical Location & Seq

Genomic Coordinates Reverse (-)

10803965 .. 10806605

Gene Structure 2641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0136900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGTCGGGACTGCCGCTTCTTTTGAATGAAGAGAATGAGAACATGGTTGTATTTCGTGTTCGTCAAAGTGCTAGGGTTAGATACAGGAATACTTTTCAGAGATTGGAGATCCCAGGCATCCCCCAATGGAATCCTGAACATCCAGCAGCCAACTCTCAGCCAATTGATATCCCTGGAGCGAGATTTGGTGATCATGTTGATGTTGAGGTTGGCTCCCCTCCTTCTCTTTGCCACTGCTCACATTTGGCCGTGGTGGAGCGTTCACTTCAGGTTCTATTGGCAGCACCGCCTGTTGGATTCCCTCCCCGTTGCCACTGCTCTCATTTGGTTGTGACCAAGCGATCACTTCACGTTGGGGCTGTGTTGGCAGCACCACCTGTTGGATCCCCTCACTGTTGCCACTGCTCTCATTTAGTTGTGATGGAGCGATCTCTTCAGGCTATGTTGCCAGCGACACCACCTGTTGGTCCCCAGTACCAATATCAGCTTCGCAGAACAAAGTCGGCGTCATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0031347 GO:0031348 GO:0031984 GO:0032101 GO:0032102 GO:0032479 GO:0032480 GO:0032991 GO:0034098 GO:0036501 GO:0039531 GO:0039532 GO:0039535 GO:0039536 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045088 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050776 GO:0050789 GO:0050794 GO:0051117 GO:0051239 GO:0051241 GO:0051603 GO:0065007 GO:0071704 GO:0080134 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UFD1

Protein Analysis

171

Amino Acids

18.81

Weight (kDa)

8.8

Isoelectric Point (pI)

63.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23530
rosa_chinensis	RchiOBHm_Chr7g0212281 RchiOBHm_Chr7g0212841
rosa_laevigata	RLG00000002866 RLG00000002899
rosa_multiflora	Rmu_sc0000394.1_g000048 Rmu_sc0001911.1_g000048 Rmu_sc0013698.1_g000013 Rmu_sc0042115.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246520 Rroxscaffold_3G00246930
rosa_rugosa	Rorug07G0133300 Rorug07G0136900
rosa_samantha	Rh7AG265900 Rh7AG268500 Rh7BG264100 Rh7CG282800 Rh7CG287500 Rh7DG272800 Rh7DG276600
rosa_wichuraiana	Rw7G023200 Rw7G023320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	380, 464
AciI	CCGC	2 cut(s)	14, 287
AclWI	GGATC	3 cut(s)	103, 378, 391
AcoI	YGGCCR	1 cut(s)	246
AcuI	CTGAAG	2 cut(s)	251, 419
AcyI	GRCGYC	1 cut(s)	506
AfaI	GTAC	1 cut(s)	476
AfiI	CCNNNNNNNGG	3 cut(s)	293, 380, 464
AgsI	TTSAA	1 cut(s)	25
AjnI	CCWGG	2 cut(s)	112, 172
AjuI	GAANNNNNNNTTGG	2 cut(s)	471, 503
AluBI	AGCT	1 cut(s)	487
AluI	AGCT	1 cut(s)	487
AlwI	GGATC	3 cut(s)	103, 378, 391
AoxI	GGCC	1 cut(s)	246
ApeKI	GCWGC	3 cut(s)	146, 281, 368
ArsI	GACNNNNNNTTYG	1 cut(s)	491
AspS9I	GGNCC	1 cut(s)	467
AsuHPI	GGTGA	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	467
BamHI	GGATCC	1 cut(s)	383
BbvI	GCAGC	3 cut(s)	158, 293, 380
BccI	CCATC	1 cut(s)	415
BceAI	ACGGC	1 cut(s)	233
BciT130I	CCWGG	2 cut(s)	114, 174
BclI	TGATCA	1 cut(s)	190
BfaI	CTAG	1 cut(s)	72
BisI	GCNGC	4 cut(s)	14, 147, 282, 369
BlsI	GCNGC	4 cut(s)	15, 148, 283, 370
Bme1390I	CCNGG	2 cut(s)	114, 174
Bme18I	GGWCC	1 cut(s)	467
BmgT120I	GGNCC	1 cut(s)	467
BmiI	GGNNCC	3 cut(s)	214, 385, 469
BmrFI	CCNGG	2 cut(s)	114, 174
BmrI	ACTGGG	1 cut(s)	466
BmsI	GCATC	1 cut(s)	126
BmuI	ACTGGG	1 cut(s)	466
BplI	GAGNNNNNCTC	2 cut(s)	197, 229
BpmI	CTGGAG	1 cut(s)	195
BsaHI	GRCGYC	1 cut(s)	506
BsaJI	CCNNGG	3 cut(s)	112, 172, 249
Bsc4I	CCNNNNNNNGG	3 cut(s)	293, 380, 464
Bse1I	ACTGG	1 cut(s)	472
BseBI	CCWGG	2 cut(s)	114, 174
BseDI	CCNNGG	3 cut(s)	112, 172, 249
BseGI	GGATG	2 cut(s)	117, 139
BseLI	CCNNNNNNNGG	3 cut(s)	293, 380, 464
BseMII	CTCAG	1 cut(s)	170
BseNI	ACTGG	1 cut(s)	472
BseXI	GCAGC	3 cut(s)	158, 293, 380
BshFI	GGCC	1 cut(s)	248
BslFI	GGGAC	2 cut(s)	21, 453
BslI	CCNNNNNNNGG	3 cut(s)	293, 380, 464
BsmFI	GGGAC	2 cut(s)	21, 453
BsnI	GGCC	1 cut(s)	248
Bsp143I	GATC	5 cut(s)	108, 190, 341, 383, 428
BspACI	CCGC	2 cut(s)	14, 287
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	1 cut(s)	169
BspLI	GGNNCC	3 cut(s)	214, 385, 469
BspPI	GGATC	3 cut(s)	103, 378, 391
BsrI	ACTGG	1 cut(s)	472
BssECI	CCNNGG	3 cut(s)	112, 172, 249
BssMI	GATC	5 cut(s)	108, 190, 341, 383, 428
BssNI	GRCGYC	1 cut(s)	506
Bst2UI	CCWGG	2 cut(s)	114, 174
Bst4CI	ACNGT	1 cut(s)	395
Bst6I	CTCTTC	2 cut(s)	24, 438
BstACI	GRCGYC	1 cut(s)	506
BstC8I	GCNNGC	1 cut(s)	450
BstDEI	CTNAG	1 cut(s)	156
BstDSI	CCRYGG	1 cut(s)	249
BstF5I	GGATG	2 cut(s)	117, 139
BstKTI	GATC	5 cut(s)	111, 193, 344, 386, 431
BstMBI	GATC	5 cut(s)	108, 190, 341, 383, 428
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstNI	CCWGG	2 cut(s)	114, 174
BstSCI	CCNGG	2 cut(s)	112, 172
BstV1I	GCAGC	3 cut(s)	158, 293, 380
BstX2I	RGATCY	2 cut(s)	108, 383
BstYI	RGATCY	2 cut(s)	108, 383
BsuRI	GGCC	1 cut(s)	248
BtgI	CCRYGG	1 cut(s)	249
BtsCI	GGATG	2 cut(s)	117, 139
BtsI	GCAGTG	3 cut(s)	232, 313, 400
BtsIMutI	CAGTG	4 cut(s)	232, 313, 391, 400
Cac8I	GCNNGC	1 cut(s)	450
Cfr13I	GGNCC	1 cut(s)	467
CseI	GACGC	1 cut(s)	495
Csp6I	GTAC	1 cut(s)	475
CviAII	CATG	2 cut(s)	43, 194
CviJI	RGCY	7 cut(s)	149, 160, 213, 248, 359, 440, 487
CviKI_1	RGCY	7 cut(s)	149, 160, 213, 248, 359, 440, 487
CviQI	GTAC	1 cut(s)	475
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	5 cut(s)	110, 192, 343, 385, 430
DpnII	GATC	5 cut(s)	108, 190, 341, 383, 428
EaeI	YGGCCR	1 cut(s)	246
Eam1104I	CTCTTC	2 cut(s)	24, 438
EarI	CTCTTC	2 cut(s)	24, 438
Eco32I	GATATC	1 cut(s)	169
Eco47I	GGWCC	1 cut(s)	467
Eco57I	CTGAAG	2 cut(s)	251, 419
EcoRII	CCWGG	2 cut(s)	112, 172
EcoRV	GATATC	1 cut(s)	169
FaeI	CATG	2 cut(s)	46, 197
FaiI	YATR	3 cut(s)	44, 195, 443
FaqI	GGGAC	2 cut(s)	21, 453
FatI	CATG	2 cut(s)	42, 193
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	4 cut(s)	14, 147, 282, 369
FokI	GGATG	2 cut(s)	104, 126
Fsp4HI	GCNGC	4 cut(s)	14, 147, 282, 369
FspBI	CTAG	1 cut(s)	72
GluI	GCNGC	4 cut(s)	14, 147, 282, 369
GsuI	CTGGAG	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	248
HgaI	GACGC	1 cut(s)	495
Hin1I	GRCGYC	1 cut(s)	506
Hin1II	CATG	2 cut(s)	46, 197
HinfI	GANTC	2 cut(s)	130, 297
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	263
Hpy188I	TCNGA	2 cut(s)	99, 515
Hpy188III	TCNNGA	2 cut(s)	6, 134
Hpy8I	GTNNAC	1 cut(s)	263
HpyAV	CCTTC	1 cut(s)	231
HpyCH4III	ACNGT	1 cut(s)	395
HpyCH4IV	ACGT	1 cut(s)	351
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	1 cut(s)	351
Hsp92I	GRCGYC	1 cut(s)	506
Hsp92II	CATG	2 cut(s)	46, 197
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	5 cut(s)	108, 190, 341, 383, 428
LmnI	GCTCC	4 cut(s)	176, 218, 256, 424
Lsp1109I	GCAGC	3 cut(s)	158, 293, 380
LweI	GCATC	1 cut(s)	126
MaeI	CTAG	1 cut(s)	72
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	5 cut(s)	110, 192, 343, 385, 430
MboI	GATC	5 cut(s)	108, 190, 341, 383, 428
MboII	GAAGA	2 cut(s)	41, 425
MfeI	CAATTG	1 cut(s)	162
MflI	RGATCY	2 cut(s)	108, 383
MluCI	AATT	1 cut(s)	162
MmeI	TCCRAC	2 cut(s)	274, 361
MnlI	CCTC	4 cut(s)	199, 228, 312, 399
MslI	CAYNNNNRTG	1 cut(s)	198
MspR9I	CCNGG	2 cut(s)	114, 174
MunI	CAATTG	1 cut(s)	162
MvaI	CCWGG	2 cut(s)	114, 174
MwoI	GCNNNNNNNGC	1 cut(s)	365
NdeII	GATC	5 cut(s)	108, 190, 341, 383, 428
NlaIII	CATG	2 cut(s)	46, 197
NlaIV	GGNNCC	3 cut(s)	214, 385, 469
NmuCI	GTSAC	1 cut(s)	331
PfeI	GAWTC	2 cut(s)	130, 297
PflMI	CCANNNNNTGG	2 cut(s)	380, 464
PkrI	GCNGC	4 cut(s)	15, 148, 283, 370
Psp6I	CCWGG	2 cut(s)	112, 172
PspGI	CCWGG	2 cut(s)	112, 172
PspN4I	GGNNCC	3 cut(s)	214, 385, 469
PspPI	GGNCC	1 cut(s)	467
PsrI	GAACNNNNNNTAC	2 cut(s)	42, 74
PsuI	RGATCY	2 cut(s)	108, 383
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
RseI	CAYNNNNRTG	1 cut(s)	198
SatI	GCNGC	4 cut(s)	14, 147, 282, 369
Sau3AI	GATC	5 cut(s)	108, 190, 341, 383, 428
Sau96I	GGNCC	1 cut(s)	467
ScrFI	CCNGG	2 cut(s)	114, 174
SetI	ASST	6 cut(s)	210, 273, 354, 379, 463, 489
SfaNI	GCATC	1 cut(s)	126
SinI	GGWCC	1 cut(s)	467
SmiMI	CAYNNNNRTG	1 cut(s)	198
Sse9I	AATT	1 cut(s)	162
SsiI	CCGC	2 cut(s)	14, 287
SspMI	CTAG	1 cut(s)	72
StyD4I	CCNGG	2 cut(s)	112, 172
TaaI	ACNGT	1 cut(s)	395
TaiI	ACGT	1 cut(s)	354
TasI	AATT	1 cut(s)	162
TauI	GCSGC	1 cut(s)	16
TfiI	GAWTC	2 cut(s)	130, 297
TscAI	CASTG	4 cut(s)	239, 320, 398, 407
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	3 cut(s)	146, 281, 368
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	1 cut(s)	42
TspRI	CASTG	4 cut(s)	239, 320, 398, 407
Van91I	CCANNNNNTGG	2 cut(s)	380, 464
VpaK11BI	GGWCC	1 cut(s)	467
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.