Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0009690

Physical Location & Seq

Genomic Coordinates Forward (+)

40240410 .. 40240814

Gene Structure 405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00246930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGATGTCATTGAAACAAAGCCTTCTAATGCCATAGGCATTACTGACAGAGACTGTGAGGTTGACTTTGCACCGTCTCTTGACTATAAGGAACCCGAAAAGCCTGTTGATGCAGCATCTGTTCCGATAAACAAGGTAGCATCAGCTGATGATCAAGTTGTGGAACCTAAATTCAGCGCTTTTACCAGAGCTGGGACGCGGTTGGATGGCAATCCTTTGCAGTATCAGCCAGCAGCAGCTATTGCTTCTTCATTTGTCACCGCCACCAACAATAATGCACAACCTTCTAGAGGATATAGTTCATCACATGCTACCAGTCATGCCAATGGTACACCAAAGGAAGCTGCAAAGCAAGAAGAGCCAAAGTTGCAGCCTTTAACAGGGAAAATGTACTCACTAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0031347 GO:0031348 GO:0031984 GO:0032101 GO:0032102 GO:0032479 GO:0032480 GO:0032991 GO:0034098 GO:0036501 GO:0039531 GO:0039532 GO:0039535 GO:0039536 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045088 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050776 GO:0050789 GO:0050794 GO:0051117 GO:0051239 GO:0051241 GO:0051603 GO:0065007 GO:0071704 GO:0080134 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UFD1

Protein Analysis

134

Amino Acids

14.34

Weight (kDa)

5.33

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23530
rosa_chinensis	RchiOBHm_Chr7g0212281 RchiOBHm_Chr7g0212841
rosa_laevigata	RLG00000002866 RLG00000002899
rosa_multiflora	Rmu_sc0000394.1_g000048 Rmu_sc0001911.1_g000048 Rmu_sc0013698.1_g000013 Rmu_sc0042115.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246520 Rroxscaffold_3G00246930
rosa_rugosa	Rorug07G0133300 Rorug07G0136900
rosa_samantha	Rh7AG265900 Rh7AG268500 Rh7BG264100 Rh7CG282800 Rh7CG287500 Rh7DG272800 Rh7DG276600
rosa_wichuraiana	Rw7G023200 Rw7G023320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	199
AciI	CCGC	2 cut(s)	199, 261
AcsI	RAATTY	1 cut(s)	170
AfaI	GTAC	2 cut(s)	331, 392
AfeI	AGCGCT	1 cut(s)	178
AfiI	CCNNNNNNNGG	3 cut(s)	192, 290, 380
AgsI	TTSAA	1 cut(s)	14
AluBI	AGCT	4 cut(s)	146, 191, 239, 344
AluI	AGCT	4 cut(s)	146, 191, 239, 344
Alw26I	GTCTC	2 cut(s)	45, 81
AlwNI	CAGNNNCTG	2 cut(s)	54, 119
Aor51HI	AGCGCT	1 cut(s)	178
ApeKI	GCWGC	5 cut(s)	113, 233, 236, 344, 370
ApoI	RAATTY	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	250
BbvI	GCAGC	5 cut(s)	125, 245, 248, 331, 382
BccI	CCATC	1 cut(s)	200
BclI	TGATCA	1 cut(s)	151
BcoDI	GTCTC	2 cut(s)	45, 81
BfaI	CTAG	1 cut(s)	288
BfoI	RGCGCY	1 cut(s)	180
BisI	GCNGC	5 cut(s)	114, 234, 237, 345, 371
BlsI	GCNGC	5 cut(s)	115, 235, 238, 346, 372
BmiI	GGNNCC	2 cut(s)	93, 165
BmsI	GCATC	3 cut(s)	100, 125, 149
BsaBI	GATNNNNATC	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	3 cut(s)	192, 290, 380
Bse1I	ACTGG	1 cut(s)	315
Bse8I	GATNNNNATC	1 cut(s)	210
BseGI	GGATG	2 cut(s)	10, 211
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	3 cut(s)	192, 290, 380
BseNI	ACTGG	1 cut(s)	315
BseXI	GCAGC	5 cut(s)	125, 245, 248, 331, 382
BseYI	CCCAGC	1 cut(s)	191
Bsh1236I	CGCG	1 cut(s)	199
BslFI	GGGAC	1 cut(s)	208
BslI	CCNNNNNNNGG	3 cut(s)	192, 290, 380
BsmAI	GTCTC	2 cut(s)	45, 81
BsmBI	CGTCTC	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	208
Bsp143I	GATC	1 cut(s)	151
BspACI	CCGC	2 cut(s)	199, 261
BspFNI	CGCG	1 cut(s)	199
BspLI	GGNNCC	2 cut(s)	93, 165
BspQI	GCTCTTC	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	315
BssMI	GATC	1 cut(s)	151
Bst4CI	ACNGT	2 cut(s)	56, 75
Bst6I	CTCTTC	1 cut(s)	351
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	1 cut(s)	398
BstENI	CCTNNNNNAGG	2 cut(s)	288, 378
BstF5I	GGATG	2 cut(s)	10, 211
BstFNI	CGCG	1 cut(s)	199
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	1 cut(s)	154
BstMAI	GTCTC	2 cut(s)	45, 81
BstMBI	GATC	1 cut(s)	151
BstMWI	GCNNNNNNNGC	4 cut(s)	226, 242, 358, 367
BstNSI	RCATGY	1 cut(s)	311
BstUI	CGCG	1 cut(s)	199
BstV1I	GCAGC	5 cut(s)	125, 245, 248, 331, 382
BtsCI	GGATG	2 cut(s)	10, 211
Cac8I	GCNNGC	1 cut(s)	231
CaiI	CAGNNNCTG	2 cut(s)	54, 119
CfoI	GCGC	1 cut(s)	179
CseI	GACGC	1 cut(s)	205
Csp6I	GTAC	2 cut(s)	330, 391
CviAII	CATG	2 cut(s)	308, 320
CviJI	RGCY	9 cut(s)	22, 103, 146, 191, 229, 239, 344, 361, 373
CviKI_1	RGCY	9 cut(s)	22, 103, 146, 191, 229, 239, 344, 361, 373
CviQI	GTAC	2 cut(s)	330, 391
DdeI	CTNAG	1 cut(s)	398
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco47III	AGCGCT	1 cut(s)	178
EcoNI	CCTNNNNNAGG	2 cut(s)	288, 378
Esp3I	CGTCTC	1 cut(s)	81
FaeI	CATG	2 cut(s)	311, 323
FaiI	YATR	5 cut(s)	35, 87, 297, 309, 321
FaqI	GGGAC	1 cut(s)	208
FatI	CATG	2 cut(s)	307, 319
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	5 cut(s)	114, 234, 237, 345, 371
FokI	GGATG	2 cut(s)	17, 218
Fsp4HI	GCNGC	5 cut(s)	114, 234, 237, 345, 371
FspBI	CTAG	1 cut(s)	288
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	5 cut(s)	114, 234, 237, 345, 371
GsaI	CCCAGC	1 cut(s)	195
HaeII	RGCGCY	1 cut(s)	180
HgaI	GACGC	1 cut(s)	205
HhaI	GCGC	1 cut(s)	179
Hin1II	CATG	2 cut(s)	311, 323
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	2 cut(s)	64, 332
Hpy188I	TCNGA	1 cut(s)	126
Hpy188III	TCNNGA	2 cut(s)	80, 288
Hpy8I	GTNNAC	2 cut(s)	64, 332
HpyAV	CCTTC	2 cut(s)	33, 294
HpyCH4III	ACNGT	2 cut(s)	56, 75
HpyCH4V	TGCA	6 cut(s)	71, 113, 220, 278, 347, 370
HpyF10VI	GCNNNNNNNGC	4 cut(s)	226, 242, 358, 367
HpyF3I	CTNAG	1 cut(s)	398
Hsp92II	CATG	2 cut(s)	311, 323
HspAI	GCGC	1 cut(s)	177
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	1 cut(s)	151
LguI	GCTCTTC	1 cut(s)	351
LpnPI	CCDG	6 cut(s)	117, 177, 199, 243, 328, 366
Lsp1109I	GCAGC	5 cut(s)	125, 245, 248, 331, 382
LweI	GCATC	3 cut(s)	100, 125, 149
MaeI	CTAG	1 cut(s)	288
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MboII	GAAGA	2 cut(s)	240, 368
MluCI	AATT	1 cut(s)	170
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	2 cut(s)	52, 284
MseI	TTAA	1 cut(s)	377
MslI	CAYNNNNRTG	1 cut(s)	324
MspA1I	CMGCKG	1 cut(s)	146
MvnI	CGCG	1 cut(s)	199
MwoI	GCNNNNNNNGC	4 cut(s)	226, 242, 358, 367
NdeII	GATC	1 cut(s)	151
NlaIII	CATG	2 cut(s)	311, 323
NlaIV	GGNNCC	2 cut(s)	93, 165
NmuCI	GTSAC	1 cut(s)	256
NspI	RCATGY	1 cut(s)	311
PciSI	GCTCTTC	1 cut(s)	351
PkrI	GCNGC	5 cut(s)	115, 235, 238, 346, 372
PspFI	CCCAGC	1 cut(s)	191
PspN4I	GGNNCC	2 cut(s)	93, 165
PstNI	CAGNNNCTG	2 cut(s)	54, 119
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	2 cut(s)	331, 392
RsaNI	GTAC	2 cut(s)	330, 391
RseI	CAYNNNNRTG	1 cut(s)	324
SapI	GCTCTTC	1 cut(s)	351
SaqAI	TTAA	1 cut(s)	377
SatI	GCNGC	5 cut(s)	114, 234, 237, 345, 371
Sau3AI	GATC	1 cut(s)	151
SetI	ASST	8 cut(s)	63, 138, 148, 169, 193, 241, 286, 346
SfaNI	GCATC	3 cut(s)	100, 125, 149
SmiMI	CAYNNNNRTG	1 cut(s)	324
Sse9I	AATT	1 cut(s)	170
SsiI	CCGC	2 cut(s)	199, 261
SspMI	CTAG	1 cut(s)	288
TaaI	ACNGT	2 cut(s)	56, 75
TasI	AATT	1 cut(s)	170
TatI	WGTACW	1 cut(s)	390
Tru1I	TTAA	1 cut(s)	377
Tru9I	TTAA	1 cut(s)	377
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	5 cut(s)	113, 233, 236, 344, 370
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	2 cut(s)	240, 291
XagI	CCTNNNNNAGG	2 cut(s)	288, 378
XapI	RAATTY	1 cut(s)	170
XbaI	TCTAGA	1 cut(s)	287
XceI	RCATGY	1 cut(s)	311
XspI	CTAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.