FvH4_5g24990

Decapping 5-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
16488611 .. 16499588
10978 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g24990.t4

Sequence Viewer

Length: 1590 bp
ATGGCTTCTGAATCCGGAGATCCTTATATCGGGAGCACCATAACCCTAATCTCCAAGTACGAAATCCGTTACGAAGGGATCCTCTACGTCCTCAGCGTCCAAGACTCCACCATTGGCCTCAGAAATGTTAAGTCATATGGAACAGAGGGGCGTAAGAAGGATGGCCCACAAGTTCCTCCAATTGATAAGGTGTTTGACTACATTCTGTTTAGAGGAAGCGACATTAAGGATTTGAAAGTTAAGTCTCCCGCACCTGCACAAAAAGAACAGATTCACAATGATGATCCTGCCATTATACAGTCACACTATACCGGGGCACCTGCAAGTTCTCCACGGTCAGCACTTGTTGGTGGTAAAAGTTTGTCCGAAATAACTCGGTGGCAGGATACTCCTACTTTGAGTGGTAAAAGTAATACCAATGTGTTACCTTCATATCATTCTACAACTGAAGTGGGTCCATCAGGGCATTCTTTTTCTACTCAAATTGCCACTCCTCCAGCACTTTCTTTGCCTCTCTATTGGCAAGGAAACAACGGGGCCTCACTAAGTATGTCTCAACAGCCACAAACCCAGTCTGCAGTCTTACACCAGAATAAGGCTCCTGAAAGTCAGGCATCTATAGCTATTGGCTTGGCAGATACTTCAGCTCGTGTTGCCCCTGCAATCTCATCTTCTACATCAACTTCTGTAAATCCAAAATTTCCTCCCTCGCTTACTTCTGTAAACTACTCTTCTGCTCTTGATATGCCTTCATCCTTGGCCACACAGATATCTTTACCATCTCATTCTACACCTGTGAATGCTAGTCAACTAAATATGCCTTTCTTTCTTTCACCTGGCCAAGACTGGAATACAAGGGAAACACAATATTATAGTAAAGCCACTTCTGATTCAATACCAGTTCTTCCTGTGCAGTCCATGCCTTACCCTGCATCGTCTTCTATGGTTTCCGATGCAGGTCCTTTGGTAGCACCACCTCCATCTTTGATAACTCCTGACCAATTGGCACAATATAGATCACACATACTATCTCCCTTGCAAAAGCTCTATCTTGATCAGAAGAATATCGGTGCTATGATACCAACACCACCTCAAATTTCTTCCTCCGTTCCTCCTGTCACTCAAGCACCATTGTTACCGTTGCCTACACCACAGTCTCAGTACTCGACTAGTCAGTTCAGTGAGGAGTTTGATTTTCTAGCCATGAATGAGAAGTTTAAGAAGGATGAAGTATGGGGCTACCTTGGAAAGGAAAAACAAAGGGATGAAACAGAGAAGGCGGATGACAGTGGAACTGGTCAAAACTTGGATGAAAAAGAAGGTTCCACAAAGACTGCATATAACAAGGATGAGTTCTTTGACACAATTTCATGTAATTCTCTCAACCGTGGAGCAAGAAACGGACATAGGTTTTCTGAGAGAATGAGAACAGATAGTGAGGCATTTGGCAATTTCCAGCAGAGATCCAATCATGGTTATGATGGCTATGGACCTGGGCGTGGTGGTAATTATCGGGGCTCATATCAGTCAGGAAGGGGTTACGGTTATGGTGGTAGGGGACGTGGTGGTAACATGCCCAAGTGGTGGTAA

Protein Analysis

530

Amino Acids

57.45

Weight (kDa)

6.77

Isoelectric Point (pI)

52.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM14 PF12701 8 - 82 3.3e-29 Scd6-like Sm domain
SM-ATX PF14438 9 - 81 1.4e-08 Ataxin 2 SM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 262, 328
Acc36I ACCTGC 3 cut(s) 262, 328, 947
AccB1I GGYRCC 1 cut(s) 316
AccB7I CCANNNNNTGG 1 cut(s) 1584
AccIII TCCGGA 1 cut(s) 14
AciI CCGC 2 cut(s) 249, 1280
AclWI GGATC 5 cut(s) 14, 73, 86, 278, 1458
AcoI YGGCCR 2 cut(s) 759, 838
AcsI RAATTY 2 cut(s) 698, 1095
AcuI CTGAAG 2 cut(s) 468, 627
AfaI GTAC 2 cut(s) 59, 1163
AfiI CCNNNNNNNGG 5 cut(s) 29, 595, 1249, 1499, 1584
AgsI TTSAA 2 cut(s) 235, 894
AhlI ACTAGT 1 cut(s) 1169
AjiI CACGTC 1 cut(s) 1562
AjnI CCWGG 2 cut(s) 835, 1492
AluBI AGCT 3 cut(s) 623, 647, 1045
AluI AGCT 3 cut(s) 623, 647, 1045
Alw21I GWGCWC 1 cut(s) 38
Alw26I GTCTC 3 cut(s) 249, 558, 1161
AlwI GGATC 5 cut(s) 14, 73, 86, 278, 1458
Aor13HI TCCGGA 1 cut(s) 14
AoxI GGCC 5 cut(s) 115, 163, 537, 759, 838
ApoI RAATTY 2 cut(s) 698, 1095
Asp700I GAANNNNTTC 1 cut(s) 270
AspS9I GGNCC 5 cut(s) 164, 455, 537, 959, 1490
AsuC2I CCSGG 1 cut(s) 313
AsuHPI GGTGA 1 cut(s) 825
AvaII GGWCC 3 cut(s) 455, 959, 1490
BaeGI GKGCMC 1 cut(s) 319
BalI TGGCCA 2 cut(s) 761, 840
BamHI GGATCC 1 cut(s) 78
BanI GGYRCC 1 cut(s) 316
BanII GRGCYC 1 cut(s) 1520
BarI GAAGNNNNNNTAC 2 cut(s) 868, 900
BauI CACGAG 1 cut(s) 648
BbsI GAAGAC 1 cut(s) 930
Bbv12I GWGCWC 1 cut(s) 38
BbvCI CCTCAGC 1 cut(s) 92
BccI CCATC 5 cut(s) 155, 466, 787, 988, 1475
BciT130I CCWGG 2 cut(s) 837, 1494
BciVI GTATCC 1 cut(s) 379
BclI TGATCA 1 cut(s) 1054
BcnI CCSGG 1 cut(s) 313
BcoDI GTCTC 3 cut(s) 249, 558, 1161
BcuI ACTAGT 1 cut(s) 1169
BfaI CTAG 3 cut(s) 804, 1170, 1199
BfmI CTRYAG 2 cut(s) 576, 618
BfuAI ACCTGC 3 cut(s) 262, 328, 947
BfuI GTATCC 1 cut(s) 379
BmcAI AGTACT 1 cut(s) 1163
Bme1390I CCNGG 3 cut(s) 313, 837, 1494
Bme18I GGWCC 3 cut(s) 455, 959, 1490
BmgBI CACGTC 1 cut(s) 1562
BmgT120I GGNCC 5 cut(s) 164, 455, 537, 959, 1490
BmiI GGNNCC 6 cut(s) 80, 318, 456, 538, 600, 1324
BmrFI CCNGG 3 cut(s) 313, 837, 1494
BmrI ACTGGG 1 cut(s) 565
BmsI GCATC 3 cut(s) 623, 941, 943
BmuI ACTGGG 1 cut(s) 565
BpiI GAAGAC 1 cut(s) 930
BpmI CTGGAG 1 cut(s) 480
Bpu10I CCTNAGC 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 1107
BpuMI CCSGG 1 cut(s) 313
BsaJI CCNNGG 6 cut(s) 312, 332, 756, 1243, 1387, 1493
BsaWI WCCGGW 1 cut(s) 14
Bsc4I CCNNNNNNNGG 5 cut(s) 29, 595, 1249, 1499, 1584
Bse1I ACTGG 4 cut(s) 571, 851, 899, 1300
BseAI TCCGGA 1 cut(s) 14
BseBI CCWGG 2 cut(s) 837, 1494
BseDI CCNNGG 6 cut(s) 312, 332, 756, 1243, 1387, 1493
BseGI GGATG 7 cut(s) 166, 752, 1231, 1270, 1288, 1315, 1354
BseLI CCNNNNNNNGG 5 cut(s) 29, 595, 1249, 1499, 1584
BseMII CTCAG 4 cut(s) 106, 133, 1172, 1407
BseNI ACTGG 4 cut(s) 571, 851, 899, 1300
BseRI GAGGAG 2 cut(s) 483, 1199
BseSI GKGCMC 1 cut(s) 319
BsgI GTGCAG 2 cut(s) 240, 932
BshFI GGCC 5 cut(s) 117, 165, 539, 761, 840
BshNI GGYRCC 1 cut(s) 316
BsiHKAI GWGCWC 1 cut(s) 38
BsiSI CCGG 2 cut(s) 15, 312
BslFI GGGAC 1 cut(s) 1572
BslI CCNNNNNNNGG 5 cut(s) 29, 595, 1249, 1499, 1584
BsmAI GTCTC 3 cut(s) 249, 558, 1161
BsmFI GGGAC 1 cut(s) 1572
BsmI GAATGC 2 cut(s) 466, 805
BsnI GGCC 5 cut(s) 117, 165, 539, 761, 840
Bsp1286I GDGCHC 3 cut(s) 38, 319, 1520
Bsp13I TCCGGA 1 cut(s) 14
Bsp143I GATC 6 cut(s) 19, 78, 283, 1016, 1054, 1463
BspACI CCGC 2 cut(s) 249, 1280
BspANI GGCC 5 cut(s) 117, 165, 539, 761, 840
BspCNI CTCAG 4 cut(s) 105, 132, 1171, 1408
BspEI TCCGGA 1 cut(s) 14
BspLI GGNNCC 6 cut(s) 80, 318, 456, 538, 600, 1324
BspMAI CTGCAG 1 cut(s) 580
BspMI ACCTGC 3 cut(s) 262, 328, 947
BspPI GGATC 5 cut(s) 14, 73, 86, 278, 1458
BspT107I GGYRCC 1 cut(s) 316
BsrI ACTGG 4 cut(s) 571, 851, 899, 1300
BssECI CCNNGG 6 cut(s) 312, 332, 756, 1243, 1387, 1493
BssMI GATC 6 cut(s) 19, 78, 283, 1016, 1054, 1463
BssSI CACGAG 1 cut(s) 648
BssT1I CCWWGG 2 cut(s) 756, 1243
Bst2BI CACGAG 1 cut(s) 648
Bst2UI CCWGG 2 cut(s) 837, 1494
Bst4CI ACNGT 7 cut(s) 300, 336, 1140, 1155, 1289, 1388, 1544
Bst6I CTCTTC 1 cut(s) 736
BstAPI GCANNNNNTGC 1 cut(s) 919
BstDEI CTNAG 5 cut(s) 92, 119, 545, 1158, 1416
BstDSI CCRYGG 2 cut(s) 332, 1387
BstENI CCTNNNNNAGG 1 cut(s) 1247
BstF5I GGATG 7 cut(s) 166, 752, 1231, 1270, 1288, 1315, 1354
BstKTI GATC 6 cut(s) 22, 81, 286, 1019, 1057, 1466
BstMAI GTCTC 3 cut(s) 249, 558, 1161
BstMBI GATC 6 cut(s) 19, 78, 283, 1016, 1054, 1463
BstMWI GCNNNNNNNGC 3 cut(s) 620, 653, 919
BstNI CCWGG 2 cut(s) 837, 1494
BstNSI RCATGY 1 cut(s) 1576
BstSCI CCNGG 3 cut(s) 311, 835, 1492
BstSFI CTRYAG 2 cut(s) 576, 618
BstSLI GKGCMC 1 cut(s) 319
BstV2I GAAGAC 1 cut(s) 930
BstX2I RGATCY 3 cut(s) 19, 78, 1463
BstYI RGATCY 3 cut(s) 19, 78, 1463
BsuI GTATCC 1 cut(s) 379
BsuRI GGCC 5 cut(s) 117, 165, 539, 761, 840
BtgI CCRYGG 2 cut(s) 332, 1387
BtrI CACGTC 1 cut(s) 1562
BtsCI GGATG 7 cut(s) 166, 752, 1231, 1270, 1288, 1315, 1354
BtsIMutI CAGTG 2 cut(s) 1186, 1294
BveI ACCTGC 3 cut(s) 262, 328, 947
Cfr13I GGNCC 5 cut(s) 164, 455, 537, 959, 1490
CseI GACGC 1 cut(s) 85
Csp6I GTAC 2 cut(s) 58, 1162
CspCI CAANNNNNGTGG 2 cut(s) 432, 467
CviAII CATG 5 cut(s) 919, 1204, 1371, 1472, 1573
CviQI GTAC 2 cut(s) 58, 1162
DdeI CTNAG 5 cut(s) 92, 119, 545, 1158, 1416
DpnI GATC 6 cut(s) 21, 80, 285, 1018, 1056, 1465
DpnII GATC 6 cut(s) 19, 78, 283, 1016, 1054, 1463
EaeI YGGCCR 2 cut(s) 759, 838
Eam1104I CTCTTC 1 cut(s) 736
EarI CTCTTC 1 cut(s) 736
EciI GGCGGA 1 cut(s) 1295
Eco130I CCWWGG 2 cut(s) 756, 1243
Eco24I GRGCYC 1 cut(s) 1520
Eco32I GATATC 1 cut(s) 771
Eco47I GGWCC 3 cut(s) 455, 959, 1490
Eco57I CTGAAG 2 cut(s) 468, 627
EcoNI CCTNNNNNAGG 1 cut(s) 1247
EcoO109I RGGNCCY 2 cut(s) 537, 959
EcoRII CCWGG 2 cut(s) 835, 1492
EcoRV GATATC 1 cut(s) 771
EcoT14I CCWWGG 2 cut(s) 756, 1243
EcoT38I GRGCYC 1 cut(s) 1520
ErhI CCWWGG 2 cut(s) 756, 1243
FaeI CATG 5 cut(s) 922, 1207, 1374, 1475, 1576
FaqI GGGAC 1 cut(s) 1572
FatI CATG 5 cut(s) 918, 1203, 1370, 1471, 1572
FauI CCCGC 1 cut(s) 256
FauNDI CATATG 1 cut(s) 136
FbaI TGATCA 1 cut(s) 1054
FokI GGATG 7 cut(s) 173, 739, 1238, 1277, 1295, 1322, 1361
FriOI GRGCYC 1 cut(s) 1520
FspBI CTAG 3 cut(s) 804, 1170, 1199
GsuI CTGGAG 1 cut(s) 480
HaeIII GGCC 5 cut(s) 117, 165, 539, 761, 840
HapII CCGG 2 cut(s) 15, 312
HgaI GACGC 1 cut(s) 85
Hin1II CATG 5 cut(s) 922, 1207, 1374, 1475, 1576
HincII GTYRAC 1 cut(s) 809
HindII GTYRAC 1 cut(s) 809
HinfI GANTC 4 cut(s) 11, 104, 271, 890
HpaII CCGG 2 cut(s) 15, 312
HphI GGTGA 1 cut(s) 825
Hpy166II GTNNAC 2 cut(s) 724, 809
Hpy188I TCNGA 7 cut(s) 10, 122, 367, 889, 952, 1059, 1417
Hpy188III TCNNGA 7 cut(s) 15, 31, 602, 740, 995, 1052, 1530
Hpy8I GTNNAC 2 cut(s) 724, 809
HpyAV CCTTC 8 cut(s) 68, 151, 438, 759, 1216, 1270, 1313, 1527
HpyCH4III ACNGT 7 cut(s) 300, 336, 1140, 1155, 1289, 1388, 1544
HpyCH4IV ACGT 2 cut(s) 87, 1561
HpyCH4V TGCA 9 cut(s) 257, 323, 578, 662, 913, 932, 956, 1039, 1337
HpyF10VI GCNNNNNNNGC 3 cut(s) 620, 653, 919
HpyF3I CTNAG 5 cut(s) 92, 119, 545, 1158, 1416
HpySE526I ACGT 2 cut(s) 87, 1561
Hsp92II CATG 5 cut(s) 922, 1207, 1374, 1475, 1576
Kpn2I TCCGGA 1 cut(s) 14
Ksp22I TGATCA 1 cut(s) 1054
Kzo9I GATC 6 cut(s) 19, 78, 283, 1016, 1054, 1463
LmnI GCTCC 3 cut(s) 33, 604, 1391
LweI GCATC 3 cut(s) 623, 941, 943
MaeI CTAG 3 cut(s) 804, 1170, 1199
MaeII ACGT 2 cut(s) 87, 1561
MaeIII GTNAC 7 cut(s) 68, 300, 423, 1117, 1134, 1538, 1568
MalI GATC 6 cut(s) 21, 80, 285, 1018, 1056, 1465
MboI GATC 6 cut(s) 19, 78, 283, 1016, 1054, 1463
MboII GAAGA 6 cut(s) 663, 723, 896, 930, 1072, 1092
MfeI CAATTG 2 cut(s) 180, 1001
MflI RGATCY 3 cut(s) 19, 78, 1463
MhlI GDGCHC 3 cut(s) 38, 319, 1520
MlsI TGGCCA 2 cut(s) 761, 840
MluCI AATT 9 cut(s) 180, 483, 698, 1001, 1095, 1365, 1375, 1450, 1507
MluNI TGGCCA 2 cut(s) 761, 840
MlyI GAGTC 1 cut(s) 98
Mox20I TGGCCA 2 cut(s) 761, 840
MroI TCCGGA 1 cut(s) 14
MroXI GAANNNNTTC 1 cut(s) 270
MscI TGGCCA 2 cut(s) 761, 840
MseI TTAA 4 cut(s) 129, 225, 240, 1218
MslI CAYNNNNRTG 2 cut(s) 279, 1476
Msp20I TGGCCA 2 cut(s) 761, 840
MspI CCGG 2 cut(s) 15, 312
MspR9I CCNGG 3 cut(s) 313, 837, 1494
MunI CAATTG 2 cut(s) 180, 1001
Mva1269I GAATGC 2 cut(s) 466, 805
MvaI CCWGG 2 cut(s) 837, 1494
MwoI GCNNNNNNNGC 3 cut(s) 620, 653, 919
NciI CCSGG 1 cut(s) 313
NdeI CATATG 1 cut(s) 136
NdeII GATC 6 cut(s) 19, 78, 283, 1016, 1054, 1463
NlaIII CATG 5 cut(s) 922, 1207, 1374, 1475, 1576
NlaIV GGNNCC 6 cut(s) 80, 318, 456, 538, 600, 1324
NmuCI GTSAC 2 cut(s) 300, 1117
NspI RCATGY 1 cut(s) 1576
PaqCI CACCTGC 2 cut(s) 262, 328
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 2 cut(s) 466, 805
PdmI GAANNNNTTC 1 cut(s) 270
PfeI GAWTC 3 cut(s) 11, 271, 890
PflMI CCANNNNNTGG 1 cut(s) 1584
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PpuMI RGGWCCY 1 cut(s) 959
Psp5II RGGWCCY 1 cut(s) 959
Psp6I CCWGG 2 cut(s) 835, 1492
PspGI CCWGG 2 cut(s) 835, 1492
PspN4I GGNNCC 6 cut(s) 80, 318, 456, 538, 600, 1324
PspPI GGNCC 5 cut(s) 164, 455, 537, 959, 1490
PspPPI RGGWCCY 1 cut(s) 959
PstI CTGCAG 1 cut(s) 580
PsuI RGATCY 3 cut(s) 19, 78, 1463
RsaI GTAC 2 cut(s) 59, 1163
RsaNI GTAC 2 cut(s) 58, 1162
RseI CAYNNNNRTG 2 cut(s) 279, 1476
SaqAI TTAA 4 cut(s) 129, 225, 240, 1218
Sau3AI GATC 6 cut(s) 19, 78, 283, 1016, 1054, 1463
Sau96I GGNCC 5 cut(s) 164, 455, 537, 959, 1490
ScaI AGTACT 1 cut(s) 1163
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 3 cut(s) 313, 837, 1494
SduI GDGCHC 3 cut(s) 38, 319, 1520
SfaNI GCATC 3 cut(s) 623, 941, 943
SfcI CTRYAG 2 cut(s) 576, 618
SinI GGWCC 3 cut(s) 455, 959, 1490
SmiMI CAYNNNNRTG 2 cut(s) 279, 1476
SmlI CTYRAG 1 cut(s) 1122
SmoI CTYRAG 1 cut(s) 1122
SpeI ACTAGT 1 cut(s) 1169
Sse9I AATT 9 cut(s) 180, 483, 698, 1001, 1095, 1365, 1375, 1450, 1507
SsiI CCGC 2 cut(s) 249, 1280
SspI AATATT 1 cut(s) 869
SspMI CTAG 3 cut(s) 804, 1170, 1199
StyD4I CCNGG 3 cut(s) 311, 835, 1492
StyI CCWWGG 2 cut(s) 756, 1243
TaaI ACNGT 7 cut(s) 300, 336, 1140, 1155, 1289, 1388, 1544
TaiI ACGT 2 cut(s) 90, 1564
TaqI TCGA 1 cut(s) 1166
TasI AATT 9 cut(s) 180, 483, 698, 1001, 1095, 1365, 1375, 1450, 1507
TatI WGTACW 1 cut(s) 1161
TfiI GAWTC 3 cut(s) 11, 271, 890
Tru1I TTAA 4 cut(s) 129, 225, 240, 1218
Tru9I TTAA 4 cut(s) 129, 225, 240, 1218
TscAI CASTG 2 cut(s) 1186, 1294
TseFI GTSAC 2 cut(s) 300, 1117
Tsp45I GTSAC 2 cut(s) 300, 1117
TspDTI ATGAA 7 cut(s) 420, 741, 1220, 1242, 1281, 1326, 1359
TspGWI ACGGA 3 cut(s) 56, 1096, 1416
TspRI CASTG 2 cut(s) 1186, 1294
Van91I CCANNNNNTGG 1 cut(s) 1584
VpaK11BI GGWCC 3 cut(s) 455, 959, 1490
XagI CCTNNNNNAGG 1 cut(s) 1247
XapI RAATTY 2 cut(s) 698, 1095
XceI RCATGY 1 cut(s) 1576
XmnI GAANNNNTTC 1 cut(s) 270
XspI CTAG 3 cut(s) 804, 1170, 1199
ZrmI AGTACT 1 cut(s) 1163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.