Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006296

Physical Location & Seq

Genomic Coordinates Reverse (-)

12049485 .. 12049992

Gene Structure 508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0151800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGGGTAAAGGCTTCGAGATTGATCTGATCGAACCGCTGGAGAATTATCCTACAATTCTAATTTTCACAAAGGGATATGGAATCAGGTCTCTGATTGAATCAAGGTTTAATGTTGATAAGGGATTCAATGTGAAGCTCTTCTATGGGGCCAGAAACCTTGACAGAATGGCTTATCAGGGTTGCATTTTCTTTTTCGATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0000956 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010603 GO:0010605 GO:0010606 GO:0010608 GO:0010629 GO:0010638 GO:0016070 GO:0016071 GO:0017148 GO:0019222 GO:0019439 GO:0031086 GO:0031087 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031334 GO:0032268 GO:0032269 GO:0032991 GO:0033043 GO:0034248 GO:0034249 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:1901360 GO:1901361 GO:1901575 GO:1902115 GO:1902117 GO:1990904 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FDF LSM14

Protein Analysis

67

Amino Acids

7.81

Weight (kDa)

6.12

Isoelectric Point (pI)

38.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45330 AT5G45330 AT5G45330
fragaria_vesca	FvH4_5g24990 FvH4_5g24990 FvH4_5g24990 FvH4_5g24990
malus_domestica	MD06G1011200.v1.1 MD16G1286000.v1.1 MD16G1286100.v1.1
prunus_persica	Prupe.5G013500_v2.0.a1 Prupe.5G013500_v2.0.a1 Prupe.5G013500_v2.0.a1 Prupe.5G013500_v2.0.a1
pyrus_communis	pycom06g00920 pycom16g25770
rosa_chinensis	RchiOBHm_Chr7g0215271
rosa_laevigata	RLG00000002675
rosa_multiflora	Rmu_sc0007904.1_g000005
rosa_roxburghii	Rroxscaffold_3G00244350
rosa_rugosa	Rorug07G0151700 Rorug07G0151800
rosa_samantha	Rh7AG288400 Rh7BG280500 Rh7CG308200 Rh7DG292000
rosa_wichuraiana	Rw7G024650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	35
AgsI	TTSAA	2 cut(s)	98, 127
AluBI	AGCT	1 cut(s)	136
AluI	AGCT	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	93
AoxI	GGCC	1 cut(s)	147
Asp700I	GAANNNNTTC	1 cut(s)	137
AspS9I	GGNCC	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	93
BmgT120I	GGNCC	1 cut(s)	147
BmiI	GGNNCC	1 cut(s)	148
BpmI	CTGGAG	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	93
BshFI	GGCC	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	93
BsnI	GGCC	1 cut(s)	149
Bso31I	GGTCTC	1 cut(s)	93
Bsp143I	GATC	2 cut(s)	22, 27
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	1 cut(s)	149
BspLI	GGNNCC	1 cut(s)	148
BspQI	GCTCTTC	1 cut(s)	143
BspTNI	GGTCTC	1 cut(s)	93
BssMI	GATC	2 cut(s)	22, 27
Bst6I	CTCTTC	1 cut(s)	143
BstKTI	GATC	2 cut(s)	25, 30
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	2 cut(s)	22, 27
BsuRI	GGCC	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	147
CviJI	RGCY	4 cut(s)	12, 136, 149, 170
CviKI_1	RGCY	4 cut(s)	12, 136, 149, 170
DpnI	GATC	2 cut(s)	24, 29
DpnII	GATC	2 cut(s)	22, 27
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
Eco31I	GGTCTC	1 cut(s)	93
FaiI	YATR	2 cut(s)	78, 144
GsuI	CTGGAG	1 cut(s)	59
HaeIII	GGCC	1 cut(s)	149
HinfI	GANTC	3 cut(s)	81, 98, 123
Hpy188I	TCNGA	2 cut(s)	27, 93
Hpy188III	TCNNGA	1 cut(s)	16
HpyCH4V	TGCA	1 cut(s)	183
Kzo9I	GATC	2 cut(s)	22, 27
LguI	GCTCTTC	1 cut(s)	143
LpnPI	CCDG	4 cut(s)	23, 70, 161, 163
MalI	GATC	2 cut(s)	24, 29
MboI	GATC	2 cut(s)	22, 27
MboII	GAAGA	1 cut(s)	130
MluCI	AATT	3 cut(s)	43, 54, 60
MroXI	GAANNNNTTC	1 cut(s)	137
MseI	TTAA	1 cut(s)	108
MspA1I	CMGCKG	1 cut(s)	37
NdeII	GATC	2 cut(s)	22, 27
NlaIV	GGNNCC	1 cut(s)	148
PciSI	GCTCTTC	1 cut(s)	143
PdmI	GAANNNNTTC	1 cut(s)	137
PfeI	GAWTC	3 cut(s)	81, 98, 123
PspN4I	GGNNCC	1 cut(s)	148
PspPI	GGNCC	1 cut(s)	147
SapI	GCTCTTC	1 cut(s)	143
SaqAI	TTAA	1 cut(s)	108
Sau3AI	GATC	2 cut(s)	22, 27
Sau96I	GGNCC	1 cut(s)	147
SetI	ASST	4 cut(s)	89, 107, 138, 159
SgeI	CNNG	7 cut(s)	28, 50, 97, 114, 162, 170, 188
Sse9I	AATT	3 cut(s)	43, 54, 60
SsiI	CCGC	1 cut(s)	35
TaqI	TCGA	3 cut(s)	15, 30, 195
TasI	AATT	3 cut(s)	43, 54, 60
TfiI	GAWTC	3 cut(s)	81, 98, 123
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
XmnI	GAANNNNTTC	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.