Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0006296

Physical Location & Seq

Genomic Coordinates Forward (+)

40906741 .. 40907114

Gene Structure 374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1286100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGAACGAGAAGTTTAAGAAAGATGAAGTATGGGGATACATAGGAAAGGACAAACAAAGAGATACAACAGAAAGAGTGGATGGCAGTGGAATTGGTCAATGTTTGGACGAGAAAGGACCCAACACAAAGCCTGCATATAAAAAGGATGAGTTCTTTGACACAATTTCATGTCATTCACTCAACCGTGGAGGAAGAAGTGGACATAGGTTTTATGAGAGAATGAAGCAGGATACTGAGGTTTGCCAAGTTATTTTATATATTTTTTGGTTAAATGTGAAAATCATAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0000956 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010603 GO:0010605 GO:0010606 GO:0010608 GO:0010629 GO:0010638 GO:0016070 GO:0016071 GO:0017148 GO:0019222 GO:0019439 GO:0031086 GO:0031087 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031334 GO:0032268 GO:0032269 GO:0032991 GO:0033043 GO:0034248 GO:0034249 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:1901360 GO:1901361 GO:1901575 GO:1902115 GO:1902117 GO:1990904 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FDF LSM14

Protein Analysis

97

Amino Acids

11.27

Weight (kDa)

8.77

Isoelectric Point (pI)

24.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FDF	PF09532	1 - 69	2.1e-11	FDF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45330 AT5G45330 AT5G45330
fragaria_vesca	FvH4_5g24990 FvH4_5g24990 FvH4_5g24990 FvH4_5g24990
malus_domestica	MD06G1011200.v1.1 MD16G1286000.v1.1 MD16G1286100.v1.1
prunus_persica	Prupe.5G013500_v2.0.a1 Prupe.5G013500_v2.0.a1 Prupe.5G013500_v2.0.a1 Prupe.5G013500_v2.0.a1
pyrus_communis	pycom06g00920 pycom16g25770
rosa_chinensis	RchiOBHm_Chr7g0215271
rosa_laevigata	RLG00000002675
rosa_multiflora	Rmu_sc0007904.1_g000005
rosa_roxburghii	Rroxscaffold_3G00244350
rosa_rugosa	Rorug07G0151700 Rorug07G0151800
rosa_samantha	Rh7AG288400 Rh7BG280500 Rh7CG308200 Rh7DG292000
rosa_wichuraiana	Rw7G024650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AspS9I	GGNCC	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	116
BaeI	ACNNNNGTAYC	2 cut(s)	222, 255
BccI	CCATC	1 cut(s)	74
BciVI	GTATCC	2 cut(s)	29, 223
BfuI	GTATCC	2 cut(s)	29, 223
Bme18I	GGWCC	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	1 cut(s)	118
BsaJI	CCNNGG	1 cut(s)	184
BseDI	CCNNGG	1 cut(s)	184
BseGI	GGATG	2 cut(s)	85, 151
BseMII	CTCAG	1 cut(s)	225
BspCNI	CTCAG	1 cut(s)	226
BspLI	GGNNCC	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	184
Bst4CI	ACNGT	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	1 cut(s)	234
BstDSI	CCRYGG	1 cut(s)	184
BstF5I	GGATG	2 cut(s)	85, 151
BsuI	GTATCC	2 cut(s)	29, 223
BtgI	CCRYGG	1 cut(s)	184
BtsCI	GGATG	2 cut(s)	85, 151
BtsI	GCAGTG	1 cut(s)	91
BtsIMutI	CAGTG	1 cut(s)	91
Cac8I	GCNNGC	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	116
CviAII	CATG	1 cut(s)	168
CviJI	RGCY	1 cut(s)	130
CviKI_1	RGCY	1 cut(s)	130
DdeI	CTNAG	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	116
FaeI	CATG	1 cut(s)	171
FatI	CATG	1 cut(s)	167
FokI	GGATG	2 cut(s)	92, 158
Hin1II	CATG	1 cut(s)	171
Hpy166II	GTNNAC	1 cut(s)	200
Hpy8I	GTNNAC	1 cut(s)	200
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4V	TGCA	1 cut(s)	134
HpyF3I	CTNAG	1 cut(s)	234
Hsp92II	CATG	1 cut(s)	171
LpnPI	CCDG	2 cut(s)	144, 212
MboII	GAAGA	1 cut(s)	204
MluCI	AATT	2 cut(s)	90, 162
MnlI	CCTC	2 cut(s)	182, 229
MseI	TTAA	2 cut(s)	15, 269
NlaIII	CATG	1 cut(s)	171
NlaIV	GGNNCC	1 cut(s)	118
PpuMI	RGGWCCY	1 cut(s)	116
Psp5II	RGGWCCY	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	116
PspPPI	RGGWCCY	1 cut(s)	116
SaqAI	TTAA	2 cut(s)	15, 269
Sau96I	GGNCC	1 cut(s)	116
SetI	ASST	2 cut(s)	209, 240
SgeI	CNNG	7 cut(s)	19, 121, 143, 180, 197, 239, 257
SinI	GGWCC	1 cut(s)	116
Sse9I	AATT	2 cut(s)	90, 162
TaaI	ACNGT	1 cut(s)	185
TasI	AATT	2 cut(s)	90, 162
Tru1I	TTAA	2 cut(s)	15, 269
Tru9I	TTAA	2 cut(s)	15, 269
TscAI	CASTG	1 cut(s)	91
TspDTI	ATGAA	4 cut(s)	17, 39, 156, 236
TspRI	CASTG	1 cut(s)	91
VpaK11BI	GGWCC	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.