Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0006296

Physical Location & Seq

Genomic Coordinates Forward (+)

40903818 .. 40905316

Gene Structure 1499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1286000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGTGTATCCCTCGATATAAAGTTGTCTTGCTTTATTTTGGTTACTTCTTGCTTTGTTATTCTATGTGGCCTTTAAATTGGTTTTCTTCTATATTGCGTCCAGCTTTTTGTCCTTTTCTTTGCTTTCAATATGTGTTGTGCCCCCTTGAGGTAAGTGTGGCAAATTTGGTTCTAACACCACACTATGCTGGGGCACCTGTAAGTTCTCCACCATCAGCCTTAGTTGGAGTTAAAAGCTTGACAGAAACAACTCATTGGCAAGATACCCCTGCCTTGAATAGTAGAGGACAACATATTGGTGTATTGCCTTCTTATCATTCTGGAACTGATGTTGGTCCATCAGGACATACCTCTTCTACTCAACTTCTCAACCCTCCAGCATTTTCTTTTCCAATGTATTGGCAAGGATACAATGGTGCATCCCTTAATATGTCTGATCATCCACTTAACCATATTCCATTGCAATCTTCATCTGCAACATCACATCCCTTCACAGTCCAAAATAAGGCTCCCAAAAATCAGTCATTTATAGCTTTTGGCGTGGAAAATGGATCTGAATGTCTTCCCCTCCGATTTCGTTTTCTGCACCAACTTTTGTACATCCAAACTTTTCTGCCTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0000956 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010603 GO:0010605 GO:0010606 GO:0010608 GO:0010629 GO:0010638 GO:0016070 GO:0016071 GO:0017148 GO:0019222 GO:0019439 GO:0031086 GO:0031087 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031334 GO:0032268 GO:0032269 GO:0032991 GO:0033043 GO:0034248 GO:0034249 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:1901360 GO:1901361 GO:1901575 GO:1902115 GO:1902117 GO:1990904 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FDF LSM14

Protein Analysis

208

Amino Acids

23.05

Weight (kDa)

8.23

Isoelectric Point (pI)

53.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45330 AT5G45330 AT5G45330
fragaria_vesca	FvH4_5g24990 FvH4_5g24990 FvH4_5g24990 FvH4_5g24990
malus_domestica	MD06G1011200.v1.1 MD16G1286000.v1.1 MD16G1286100.v1.1
prunus_persica	Prupe.5G013500_v2.0.a1 Prupe.5G013500_v2.0.a1 Prupe.5G013500_v2.0.a1 Prupe.5G013500_v2.0.a1
pyrus_communis	pycom06g00920 pycom16g25770
rosa_chinensis	RchiOBHm_Chr7g0215271
rosa_laevigata	RLG00000002675
rosa_multiflora	Rmu_sc0007904.1_g000005
rosa_roxburghii	Rroxscaffold_3G00244350
rosa_rugosa	Rorug07G0151700 Rorug07G0151800
rosa_samantha	Rh7AG288400 Rh7BG280500 Rh7CG308200 Rh7DG292000
rosa_wichuraiana	Rw7G024650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	193
AclWI	GGATC	1 cut(s)	559
AcsI	RAATTY	1 cut(s)	163
AfaI	GTAC	1 cut(s)	599
AfiI	CCNNNNNNNGG	2 cut(s)	148, 505
AgsI	TTSAA	2 cut(s)	128, 277
AluBI	AGCT	3 cut(s)	104, 237, 533
AluI	AGCT	3 cut(s)	104, 237, 533
AlwI	GGATC	1 cut(s)	559
AoxI	GGCC	1 cut(s)	68
ApoI	RAATTY	1 cut(s)	163
Asp700I	GAANNNNTTC	1 cut(s)	561
AspS9I	GGNCC	1 cut(s)	335
AvaII	GGWCC	1 cut(s)	335
BaeGI	GKGCMC	2 cut(s)	143, 196
BaeI	ACNNNNGTAYC	2 cut(s)	400, 433
BanI	GGYRCC	1 cut(s)	193
BbsI	GAAGAC	1 cut(s)	554
BccI	CCATC	2 cut(s)	220, 346
BciVI	GTATCC	2 cut(s)	17, 401
BclI	TGATCA	1 cut(s)	436
BfmI	CTRYAG	1 cut(s)	620
BfuI	GTATCC	2 cut(s)	17, 401
Bme18I	GGWCC	1 cut(s)	335
BmgT120I	GGNCC	1 cut(s)	335
BmiI	GGNNCC	2 cut(s)	195, 510
BmsI	GCATC	1 cut(s)	428
BpiI	GAAGAC	1 cut(s)	554
BpmI	CTGGAG	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 505
Bse3DI	GCAATG	1 cut(s)	458
BseGI	GGATG	4 cut(s)	419, 439, 484, 600
BseLI	CCNNNNNNNGG	2 cut(s)	148, 505
BseMI	GCAATG	1 cut(s)	458
BseSI	GKGCMC	2 cut(s)	143, 196
BseYI	CCCAGC	1 cut(s)	188
BsgI	GTGCAG	1 cut(s)	569
BshFI	GGCC	1 cut(s)	70
BshNI	GGYRCC	1 cut(s)	193
BslI	CCNNNNNNNGG	2 cut(s)	148, 505
BsnI	GGCC	1 cut(s)	70
Bsp1286I	GDGCHC	2 cut(s)	143, 196
Bsp1407I	TGTACA	1 cut(s)	597
Bsp143I	GATC	2 cut(s)	436, 551
BspANI	GGCC	1 cut(s)	70
BspLI	GGNNCC	2 cut(s)	195, 510
BspPI	GGATC	1 cut(s)	559
BspT107I	GGYRCC	1 cut(s)	193
BsrDI	GCAATG	1 cut(s)	458
BsrGI	TGTACA	1 cut(s)	597
BssMI	GATC	2 cut(s)	436, 551
Bst4CI	ACNGT	1 cut(s)	496
Bst6I	CTCTTC	1 cut(s)	358
BstAUI	TGTACA	1 cut(s)	597
BstDEI	CTNAG	1 cut(s)	220
BstF5I	GGATG	4 cut(s)	419, 439, 484, 600
BstKTI	GATC	2 cut(s)	439, 554
BstMBI	GATC	2 cut(s)	436, 551
BstSFI	CTRYAG	1 cut(s)	620
BstSLI	GKGCMC	2 cut(s)	143, 196
BstV2I	GAAGAC	1 cut(s)	554
BstX2I	RGATCY	1 cut(s)	551
BstXI	CCANNNNNNTGG	1 cut(s)	399
BstYI	RGATCY	1 cut(s)	551
BsuI	GTATCC	2 cut(s)	17, 401
BsuRI	GGCC	1 cut(s)	70
BtsCI	GGATG	4 cut(s)	419, 439, 484, 600
Cfr13I	GGNCC	1 cut(s)	335
CseI	GACGC	1 cut(s)	86
Csp6I	GTAC	1 cut(s)	598
CviJI	RGCY	6 cut(s)	70, 104, 218, 237, 509, 533
CviKI_1	RGCY	6 cut(s)	70, 104, 218, 237, 509, 533
CviQI	GTAC	1 cut(s)	598
DdeI	CTNAG	1 cut(s)	220
DpnI	GATC	2 cut(s)	438, 553
DpnII	GATC	2 cut(s)	436, 551
DraI	TTTAAA	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	358
EarI	CTCTTC	1 cut(s)	358
Eco47I	GGWCC	1 cut(s)	335
FbaI	TGATCA	1 cut(s)	436
FokI	GGATG	4 cut(s)	406, 426, 471, 587
GsaI	CCCAGC	1 cut(s)	192
GsuI	CTGGAG	1 cut(s)	360
HaeIII	GGCC	1 cut(s)	70
HgaI	GACGC	1 cut(s)	86
HindIII	AAGCTT	1 cut(s)	235
Hpy188I	TCNGA	3 cut(s)	436, 556, 572
Hpy188III	TCNNGA	2 cut(s)	321, 342
HpyAV	CCTTC	2 cut(s)	318, 499
HpyCH4III	ACNGT	1 cut(s)	496
HpyCH4V	TGCA	4 cut(s)	419, 463, 476, 586
HpyF3I	CTNAG	1 cut(s)	220
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	2 cut(s)	436, 551
LmnI	GCTCC	1 cut(s)	514
LpnPI	CCDG	7 cut(s)	114, 174, 210, 282, 306, 327, 390
LweI	GCATC	1 cut(s)	428
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	2 cut(s)	438, 553
MboI	GATC	2 cut(s)	436, 551
MboII	GAAGA	4 cut(s)	78, 345, 459, 554
MflI	RGATCY	1 cut(s)	551
MhlI	GDGCHC	2 cut(s)	143, 196
MluCI	AATT	2 cut(s)	76, 163
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	6 cut(s)	21, 142, 278, 361, 384, 578
MroXI	GAANNNNTTC	1 cut(s)	561
MseI	TTAA	4 cut(s)	74, 231, 426, 447
MslI	CAYNNNNRTG	1 cut(s)	297
NdeII	GATC	2 cut(s)	436, 551
NlaIV	GGNNCC	2 cut(s)	195, 510
PdmI	GAANNNNTTC	1 cut(s)	561
PspFI	CCCAGC	1 cut(s)	188
PspN4I	GGNNCC	2 cut(s)	195, 510
PspPI	GGNCC	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	551
RsaI	GTAC	1 cut(s)	599
RsaNI	GTAC	1 cut(s)	598
RseI	CAYNNNNRTG	1 cut(s)	297
SaqAI	TTAA	4 cut(s)	74, 231, 426, 447
Sau3AI	GATC	2 cut(s)	436, 551
Sau96I	GGNCC	1 cut(s)	335
SduI	GDGCHC	2 cut(s)	143, 196
SetI	ASST	6 cut(s)	106, 153, 199, 239, 353, 535
SfaNI	GCATC	1 cut(s)	428
SfcI	CTRYAG	1 cut(s)	620
SinI	GGWCC	1 cut(s)	335
SmiMI	CAYNNNNRTG	1 cut(s)	297
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	2 cut(s)	76, 163
TaaI	ACNGT	1 cut(s)	496
TaqI	TCGA	1 cut(s)	13
TasI	AATT	2 cut(s)	76, 163
TatI	WGTACW	1 cut(s)	597
Tru1I	TTAA	4 cut(s)	74, 231, 426, 447
Tru9I	TTAA	4 cut(s)	74, 231, 426, 447
TspDTI	ATGAA	1 cut(s)	459
VpaK11BI	GGWCC	1 cut(s)	335
XapI	RAATTY	1 cut(s)	163
XmnI	GAANNNNTTC	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.