FvH4_5g25260

Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
16737220 .. 16741878
4659 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g25260.t2

Sequence Viewer

Length: 1479 bp
ATGGATCCTTACAAGTACCGCCCTTCAAGTGCTTACGATTCCCCGTTTTGGACCACCAACTCCGGTGCTCCCGTGTGGAACAACAACTCTTCTCTAACCATTGGAGCTAGAGGTCCAATTCTCCTCGAGGACTATCATTTGGTTGAGAAACTTGCCAATTTTGATAGGGAGCGAATCCCAGAACGTGTTGTCCATGCTAGGGGAGCCAGTGCAAAGGGATTTTTTGAGGTCACCCATGATATTTCTCATCTTACATGTGCTGACTTCCTTCGAGCCCCTGGAGTGCAGACACCTGTCATTGTGCGTTTCTCAACTGTTATCCATGAGCGTGGCAGCCCTGAAACCCTGAGGGATCCTCGTGGTTTCGCAGTGAAGTTTTACACCAGAGAGGGAAATTTTGACTTGGTGGGAAACAATTTTCCTGTCTTCTTCGTCCGTGATGGAATGAAATTCCCAGACATGGTCCATGCTCTCAAGCCTAATCCAAAGTCTCACATCCAAGAGAATTGGAGGATCCTTGACTTCTTTTCCCACCATCCAGAAAGTCTGCACATGTTCACCTTCCTATTTGATGACCTGGGAATTCCACAAGATTACAGGCATATGGAAGGTTCTGGTGTTAATACATACACTCTTATCAGTAAGACTGGGAAGGCATACTACGTGAAATTTCACTGGAAGCCCACATGTGGAGTCAAGTGTTTATTGGATGAAGAGGCTATTAAGGTTGGAGGATCTAATCATAGCCATGCTACCCAAGATCTCTATGACTCAATTGCTGCTGGGAACTACCCTGAGTGGAAACTTTACATTCAGACAATTGATCCTGACCATGAGGACAAATTTGACTTTGATCCGCTTGATGTGACCAAGACTTGGCCTGAGGATATTCTCCCCCTGCAGCCAGTTGGCCGTTTGGTTCTGAATAGGAACATCGACAACTTCTTTGCAGAGAATGAACAACTTGCATTCTGCCCTGCCCTTATTGTCCCTGGTGTCTATTATTCAGATGATAAGTTGCTCCAAACTCGGATCTTCTCATATGCCGATACTCAGAGGCACCGTCTTGGCCCAAACTATCTGCAGCTCCCAGTTAATGCTCCCAAGTCTGCTCACCACAACAATCACCATGAGGGATTGATGAATTTCATGCACAGGGATGAAGAGGTTAATTACTTCCCTTCAAGGTTTGACCCTGTTCGTCATGCTGAGAGCCACCCCATTCCTTCTGCTGTCTACACCGGAAGACGTGAGAAGAGCATCATTGAGAAGGAGAACAACTTCAAGCAAGCTGGAGAAAGATACAGATCTTTTGCACCAGACAGGCAAGAACGGTATATCCGCAGGTGGGTAGACGCCCTATCCGACCCACGTTGCACCCATGAGATTCGCAGCATTTGGATCTCATATTGGTCTCAGGCCGACAAATCTTTGGGTCAGAAACTCGCATCTCATCTCAATGTTAGACCAAACTTTTGA

Protein Analysis

493

Amino Acids

56.94

Weight (kDa)

6.58

Isoelectric Point (pI)

37.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Catalase PF00199 36 - 416 1.3e-174 Catalase
Catalase-rel PF06628 441 - 504 2.9e-15 Catalase-related immune-responsive
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010839)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1335
AbsI CCTCGAGG 1 cut(s) 125
Acc36I ACCTGC 1 cut(s) 1335
AccB1I GGYRCC 1 cut(s) 1059
AccB7I CCANNNNNTGG 1 cut(s) 876
AccI GTMKAC 2 cut(s) 1236, 1353
AciI CCGC 3 cut(s) 19, 857, 1342
AcoI YGGCCR 1 cut(s) 910
AcsI RAATTY 6 cut(s) 394, 449, 582, 668, 842, 1144
AcyI GRCGYC 1 cut(s) 1356
AfaI GTAC 1 cut(s) 17
AfiI CCNNNNNNNGG 6 cut(s) 48, 199, 460, 689, 876, 1348
AflIII ACRYGT 4 cut(s) 184, 254, 552, 686
AgsI TTSAA 3 cut(s) 27, 1185, 1285
AjiI CACGTC 1 cut(s) 1250
AjnI CCWGG 3 cut(s) 277, 576, 991
AloI GAACNNNNNNTCC 4 cut(s) 174, 206, 1323, 1355
AluBI AGCT 3 cut(s) 107, 1087, 1292
AluI AGCT 3 cut(s) 107, 1087, 1292
Alw21I GWGCWC 1 cut(s) 70
Alw26I GTCTC 2 cut(s) 495, 1419
Ama87I CYCGRG 1 cut(s) 125
AoxI GGCC 4 cut(s) 878, 910, 1069, 1419
ApeKI GCWGC 5 cut(s) 333, 779, 901, 1084, 1392
ApoI RAATTY 6 cut(s) 394, 449, 582, 668, 842, 1144
ArsI GACNNNNNNTTYG 3 cut(s) 929, 961, 1458
Asp700I GAANNNNTTC 1 cut(s) 1280
AspS9I GGNCC 4 cut(s) 51, 113, 463, 1070
AsuHPI GGTGA 4 cut(s) 223, 550, 1106, 1118
AvaI CYCGRG 1 cut(s) 125
AvaII GGWCC 3 cut(s) 51, 113, 463
AxyI CCTNAGG 2 cut(s) 347, 882
BamHI GGATCC 3 cut(s) 4, 352, 513
BanI GGYRCC 1 cut(s) 1059
BanII GRGCYC 1 cut(s) 277
BarI GAAGNNNNNNTAC 2 cut(s) 644, 676
BauI CACGAG 1 cut(s) 357
BbsI GAAGAC 2 cut(s) 418, 1252
Bbv12I GWGCWC 1 cut(s) 70
BbvI GCAGC 5 cut(s) 345, 766, 913, 1096, 1404
BccI CCATC 2 cut(s) 434, 543
BceAI ACGGC 1 cut(s) 897
BciT130I CCWGG 3 cut(s) 279, 578, 993
BcoDI GTCTC 2 cut(s) 495, 1419
BfaI CTAG 2 cut(s) 108, 198
BfmI CTRYAG 2 cut(s) 899, 1082
BfuAI ACCTGC 1 cut(s) 1335
BglII AGATCT 2 cut(s) 760, 1307
BisI GCNGC 5 cut(s) 334, 780, 902, 1085, 1393
BlsI GCNGC 5 cut(s) 335, 781, 903, 1086, 1394
Bme1390I CCNGG 3 cut(s) 279, 578, 993
Bme18I GGWCC 3 cut(s) 51, 113, 463
BmeT110I CYCGRG 1 cut(s) 125
BmgBI CACGTC 1 cut(s) 1250
BmgT120I GGNCC 4 cut(s) 51, 113, 463, 1070
BmiI GGNNCC 5 cut(s) 6, 205, 354, 515, 1061
BmrFI CCNGG 3 cut(s) 279, 578, 993
BmrI ACTGGG 2 cut(s) 657, 1085
BmsI GCATC 2 cut(s) 1269, 1457
BmuI ACTGGG 2 cut(s) 657, 1085
BoxI GACNNNNGTC 1 cut(s) 293
BpiI GAAGAC 2 cut(s) 418, 1252
BplI GAGNNNNNCTC 2 cut(s) 340, 372
BpmI CTGGAG 2 cut(s) 300, 1314
BpuEI CTTGAG 1 cut(s) 458
BsaAI YACGTR 1 cut(s) 664
BsaBI GATNNNNATC 1 cut(s) 1306
BsaHI GRCGYC 1 cut(s) 1356
BsaI GGTCTC 1 cut(s) 1419
BsaJI CCNNGG 3 cut(s) 277, 577, 991
BsaWI WCCGGW 2 cut(s) 62, 1241
Bsc4I CCNNNNNNNGG 6 cut(s) 48, 199, 460, 689, 876, 1348
Bse1I ACTGG 5 cut(s) 207, 652, 680, 905, 1091
Bse21I CCTNAGG 2 cut(s) 347, 882
Bse8I GATNNNNATC 1 cut(s) 1306
BseBI CCWGG 3 cut(s) 279, 578, 993
BseDI CCNNGG 3 cut(s) 277, 577, 991
BseGI GGATG 4 cut(s) 495, 535, 715, 1165
BseJI GATNNNNATC 1 cut(s) 1306
BseLI CCNNNNNNNGG 6 cut(s) 48, 199, 460, 689, 876, 1348
BseMII CTCAG 6 cut(s) 338, 786, 873, 1067, 1200, 1430
BseNI ACTGG 5 cut(s) 207, 652, 680, 905, 1091
BseRI GAGGAG 1 cut(s) 113
BseXI GCAGC 5 cut(s) 345, 766, 913, 1096, 1404
BseYI CCCAGC 1 cut(s) 782
BsgI GTGCAG 2 cut(s) 305, 533
BshFI GGCC 4 cut(s) 880, 912, 1071, 1421
BshNI GGYRCC 1 cut(s) 1059
BsiHKAI GWGCWC 1 cut(s) 70
BsiHKCI CYCGRG 1 cut(s) 125
BsiSI CCGG 2 cut(s) 63, 1242
BslFI GGGAC 1 cut(s) 974
BslI CCNNNNNNNGG 6 cut(s) 48, 199, 460, 689, 876, 1348
BsmAI GTCTC 2 cut(s) 495, 1419
BsmFI GGGAC 1 cut(s) 974
BsmI GAATGC 1 cut(s) 968
BsnI GGCC 4 cut(s) 880, 912, 1071, 1421
Bso31I GGTCTC 1 cut(s) 1419
BsoBI CYCGRG 1 cut(s) 125
Bsp1286I GDGCHC 2 cut(s) 70, 277
BspACI CCGC 3 cut(s) 19, 857, 1342
BspANI GGCC 4 cut(s) 880, 912, 1071, 1421
BspCNI CTCAG 6 cut(s) 339, 787, 874, 1066, 1201, 1429
BspLI GGNNCC 5 cut(s) 6, 205, 354, 515, 1061
BspMAI CTGCAG 2 cut(s) 903, 1086
BspMI ACCTGC 1 cut(s) 1335
BspQI GCTCTTC 1 cut(s) 1250
BspT107I GGYRCC 1 cut(s) 1059
BspTNI GGTCTC 1 cut(s) 1419
BsrI ACTGG 5 cut(s) 207, 652, 680, 905, 1091
BssECI CCNNGG 3 cut(s) 277, 577, 991
BssNI GRCGYC 1 cut(s) 1356
BssSI CACGAG 1 cut(s) 357
Bst2BI CACGAG 1 cut(s) 357
Bst2UI CCWGG 3 cut(s) 279, 578, 993
Bst4CI ACNGT 3 cut(s) 316, 1064, 1335
Bst6I CTCTTC 4 cut(s) 94, 708, 1158, 1250
BstACI GRCGYC 1 cut(s) 1356
BstBAI YACGTR 1 cut(s) 664
BstC8I GCNNGC 1 cut(s) 1290
BstDEI CTNAG 6 cut(s) 347, 795, 882, 1053, 1209, 1416
BstEII GGTNACC 1 cut(s) 229
BstF5I GGATG 4 cut(s) 495, 535, 715, 1165
BstMAI GTCTC 2 cut(s) 495, 1419
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstNI CCWGG 3 cut(s) 279, 578, 993
BstNSI RCATGY 3 cut(s) 258, 556, 690
BstPAI GACNNNNGTC 1 cut(s) 293
BstPI GGTNACC 1 cut(s) 229
BstSCI CCNGG 3 cut(s) 277, 576, 991
BstSFI CTRYAG 2 cut(s) 899, 1082
BstV1I GCAGC 5 cut(s) 345, 766, 913, 1096, 1404
BstV2I GAAGAC 2 cut(s) 418, 1252
BstX2I RGATCY 8 cut(s) 4, 352, 513, 734, 760, 1032, 1307, 1401
BstXI CCANNNNNNTGG 1 cut(s) 329
BstYI RGATCY 8 cut(s) 4, 352, 513, 734, 760, 1032, 1307, 1401
Bsu36I CCTNAGG 2 cut(s) 347, 882
BsuRI GGCC 4 cut(s) 880, 912, 1071, 1421
BtrI CACGTC 1 cut(s) 1250
BtsCI GGATG 4 cut(s) 495, 535, 715, 1165
BtsI GCAGTG 1 cut(s) 375
BtsIMutI CAGTG 3 cut(s) 214, 375, 673
BveI ACCTGC 1 cut(s) 1335
Cac8I GCNNGC 1 cut(s) 1290
Cfr13I GGNCC 4 cut(s) 51, 113, 463, 1070
CseI GACGC 1 cut(s) 1364
Csp6I GTAC 1 cut(s) 16
CviQI GTAC 1 cut(s) 16
DdeI CTNAG 6 cut(s) 347, 795, 882, 1053, 1209, 1416
EaeI YGGCCR 1 cut(s) 910
Eam1104I CTCTTC 4 cut(s) 94, 708, 1158, 1250
EarI CTCTTC 4 cut(s) 94, 708, 1158, 1250
Eco24I GRGCYC 1 cut(s) 277
Eco31I GGTCTC 1 cut(s) 1419
Eco47I GGWCC 3 cut(s) 51, 113, 463
Eco81I CCTNAGG 2 cut(s) 347, 882
Eco88I CYCGRG 1 cut(s) 125
Eco91I GGTNACC 1 cut(s) 229
EcoO65I GGTNACC 1 cut(s) 229
EcoRI GAATTC 1 cut(s) 582
EcoRII CCWGG 3 cut(s) 277, 576, 991
EcoT38I GRGCYC 1 cut(s) 277
FaqI GGGAC 1 cut(s) 974
FauNDI CATATG 2 cut(s) 603, 1042
FblI GTMKAC 2 cut(s) 1236, 1353
Fnu4HI GCNGC 5 cut(s) 334, 780, 902, 1085, 1393
FokI GGATG 4 cut(s) 482, 522, 722, 1172
FriOI GRGCYC 1 cut(s) 277
Fsp4HI GCNGC 5 cut(s) 334, 780, 902, 1085, 1393
FspBI CTAG 2 cut(s) 108, 198
GluI GCNGC 5 cut(s) 334, 780, 902, 1085, 1393
GsaI CCCAGC 1 cut(s) 786
GsuI CTGGAG 2 cut(s) 300, 1314
HaeIII GGCC 4 cut(s) 880, 912, 1071, 1421
HapII CCGG 2 cut(s) 63, 1242
HgaI GACGC 1 cut(s) 1364
Hin1I GRCGYC 1 cut(s) 1356
HinfI GANTC 5 cut(s) 38, 174, 693, 770, 1387
HpaII CCGG 2 cut(s) 63, 1242
HphI GGTGA 4 cut(s) 223, 550, 1106, 1118
Hpy166II GTNNAC 3 cut(s) 558, 1237, 1354
Hpy188I TCNGA 7 cut(s) 816, 924, 1009, 1032, 1056, 1366, 1440
Hpy188III TCNNGA 2 cut(s) 539, 827
Hpy8I GTNNAC 3 cut(s) 558, 1237, 1354
HpyAV CCTTC 8 cut(s) 33, 278, 571, 602, 646, 1191, 1236, 1264
HpyCH4III ACNGT 3 cut(s) 316, 1064, 1335
HpyCH4IV ACGT 4 cut(s) 184, 663, 1249, 1372
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 6 cut(s) 347, 795, 882, 1053, 1209, 1416
HpySE526I ACGT 4 cut(s) 184, 663, 1249, 1372
Hsp92I GRCGYC 1 cut(s) 1356
LguI GCTCTTC 1 cut(s) 1250
LmnI GCTCC 7 cut(s) 73, 104, 169, 203, 1026, 1092, 1105
Lsp1109I GCAGC 5 cut(s) 345, 766, 913, 1096, 1404
LweI GCATC 2 cut(s) 1269, 1457
MaeI CTAG 2 cut(s) 108, 198
MaeII ACGT 4 cut(s) 184, 663, 1249, 1372
MaeIII GTNAC 2 cut(s) 229, 865
MboII GAAGA 8 cut(s) 81, 418, 421, 725, 1027, 1175, 1257, 1267
MfeI CAATTG 2 cut(s) 774, 819
MflI RGATCY 8 cut(s) 4, 352, 513, 734, 760, 1032, 1307, 1401
MhlI GDGCHC 2 cut(s) 70, 277
MlyI GAGTC 2 cut(s) 702, 764
MmeI TCCRAC 2 cut(s) 709, 1389
MroXI GAANNNNTTC 1 cut(s) 1280
MseI TTAA 4 cut(s) 621, 723, 1095, 1170
MslI CAYNNNNRTG 4 cut(s) 327, 747, 1158, 1458
MspI CCGG 2 cut(s) 63, 1242
MspR9I CCNGG 3 cut(s) 279, 578, 993
MunI CAATTG 2 cut(s) 774, 819
Mva1269I GAATGC 1 cut(s) 968
MvaI CCWGG 3 cut(s) 279, 578, 993
MwoI GCNNNNNNNGC 1 cut(s) 203
NdeI CATATG 2 cut(s) 603, 1042
NlaIV GGNNCC 5 cut(s) 6, 205, 354, 515, 1061
NmuCI GTSAC 2 cut(s) 229, 865
NspI RCATGY 3 cut(s) 258, 556, 690
PaeR7I CTCGAG 1 cut(s) 125
PaqCI CACCTGC 1 cut(s) 1335
PciI ACATGT 3 cut(s) 254, 552, 686
PciSI GCTCTTC 1 cut(s) 1250
PcsI WCGNNNNNNNCGW 1 cut(s) 1362
PctI GAATGC 1 cut(s) 968
PdmI GAANNNNTTC 1 cut(s) 1280
PfeI GAWTC 3 cut(s) 38, 174, 1387
PflFI GACNNNGTC 1 cut(s) 461
PflMI CCANNNNNTGG 1 cut(s) 876
PkrI GCNGC 5 cut(s) 335, 781, 903, 1086, 1394
PleI GAGTC 2 cut(s) 701, 764
PpsI GAGTC 2 cut(s) 701, 764
Ppu21I YACGTR 1 cut(s) 664
PscI ACATGT 3 cut(s) 254, 552, 686
PshAI GACNNNNGTC 1 cut(s) 293
Psp6I CCWGG 3 cut(s) 277, 576, 991
PspEI GGTNACC 1 cut(s) 229
PspFI CCCAGC 1 cut(s) 782
PspGI CCWGG 3 cut(s) 277, 576, 991
PspN4I GGNNCC 5 cut(s) 6, 205, 354, 515, 1061
PspPI GGNCC 4 cut(s) 51, 113, 463, 1070
PspXI VCTCGAGB 1 cut(s) 125
PstI CTGCAG 2 cut(s) 903, 1086
PsuI RGATCY 8 cut(s) 4, 352, 513, 734, 760, 1032, 1307, 1401
PsyI GACNNNGTC 1 cut(s) 461
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
RseI CAYNNNNRTG 4 cut(s) 327, 747, 1158, 1458
SapI GCTCTTC 1 cut(s) 1250
SaqAI TTAA 4 cut(s) 621, 723, 1095, 1170
SatI GCNGC 5 cut(s) 334, 780, 902, 1085, 1393
Sau96I GGNCC 4 cut(s) 51, 113, 463, 1070
SchI GAGTC 2 cut(s) 702, 764
ScrFI CCNGG 3 cut(s) 279, 578, 993
SduI GDGCHC 2 cut(s) 70, 277
SfaNI GCATC 2 cut(s) 1269, 1457
SfcI CTRYAG 2 cut(s) 899, 1082
Sfr274I CTCGAG 1 cut(s) 125
SinI GGWCC 3 cut(s) 51, 113, 463
SlaI CTCGAG 1 cut(s) 125
SmiMI CAYNNNNRTG 4 cut(s) 327, 747, 1158, 1458
SmlI CTYRAG 2 cut(s) 125, 473
SmoI CTYRAG 2 cut(s) 125, 473
SsiI CCGC 3 cut(s) 19, 857, 1342
SspMI CTAG 2 cut(s) 108, 198
StyD4I CCNGG 3 cut(s) 277, 576, 991
TaaI ACNGT 3 cut(s) 316, 1064, 1335
TaiI ACGT 4 cut(s) 187, 666, 1252, 1375
TaqI TCGA 3 cut(s) 126, 271, 936
TfiI GAWTC 3 cut(s) 38, 174, 1387
Tru1I TTAA 4 cut(s) 621, 723, 1095, 1170
Tru9I TTAA 4 cut(s) 621, 723, 1095, 1170
TscAI CASTG 3 cut(s) 214, 375, 680
TseFI GTSAC 2 cut(s) 229, 865
TseI GCWGC 5 cut(s) 333, 779, 901, 1084, 1392
Tsp45I GTSAC 2 cut(s) 229, 865
TspDTI ATGAA 6 cut(s) 461, 726, 972, 1138, 1157, 1176
TspGWI ACGGA 1 cut(s) 425
TspRI CASTG 3 cut(s) 214, 375, 680
Tth111I GACNNNGTC 1 cut(s) 461
Van91I CCANNNNNTGG 1 cut(s) 876
VpaK11BI GGWCC 3 cut(s) 51, 113, 463
XapI RAATTY 6 cut(s) 394, 449, 582, 668, 842, 1144
XceI RCATGY 3 cut(s) 258, 556, 690
XhoI CTCGAG 1 cut(s) 125
XmiI GTMKAC 2 cut(s) 1236, 1353
XmnI GAANNNNTTC 1 cut(s) 1280
XspI CTAG 2 cut(s) 108, 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.