Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010839

Physical Location & Seq

Genomic Coordinates Reverse (-)

36737914 .. 36742020

Gene Structure 4107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00244220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGTCCATGCTCTCAAGCCTAACCCGAAGTCTCACATCCAAGAGAATTGGAGGATTCTTGACTTCTTTTCCCACCATCCAGAAAGCCTGCACATGTTCACCTTCCTATTTGATGACCTGGGGGTTCCACAAGATTACAGGCATATGGAAGGCTCTGGTGTTAATACATACACTCTTATCAGTAAAACTGGGAAGGCACACTACGTGAAATTTCACTGGAAACCCACGTGTGGAGTCAAGTGTTTATTGGATGAAGAGGCTATTAAGGTTGGAGGATCTAATCACAGCCATGCTACCCAAGATCTCTATGACTCGATTGCAGCTGGGAATTACCCTGAGTGGAAACTTTACATTCAGACAATTGATCCTGATCATGAGGACAAATTTGACTTTGATCCACTTGATGTGACCAAGACTTGGCCCGAGGATATTCTGCCCCTGCAGCCAGTTGGCCGTTTGGTTCTGAATAGAAACATTGACAACTTCTTTGCAGAGAATGAACAACTTGCATTCTGCCCTGCCATTATTGTCCCTGGTGTCTATTATTCAGATGACAAGTTGCTCCAAACTCGTATCTTCTCATATTCTGACACTCAGAGGCACCGTCTTGGCCCAAACTATCTGCAGCTCCCAGTTAATGCTCCCAAGAATGCTCACCACAACAATCACCATGAGGGATTGATGAATTTCATGCACAGGGATGAGGAGGTTAATTACTTCCCATCAAGGTTTGACCCTGTTCGTCATGCTGAGAGCCACCCCATTCCTTCTGCTGTCATTACCGGAAGGCGTGAGAAGTGCATAATTGAGAAGGAGAACAACTTCAAGCAACCTGGAGAGAGATACAGATCTTTTGCACCAGACAGGCAAGAACGATATATCCGCAGGTGGGTGGACGCCCTATCTGACCCACGTTGCACCCATGAGATTCGCAGCATTTGGATCTCATACTGGTCTCAGGCTGATAAATCTCTGGGTCAGAAACTCGCATCTCATCTCAATGTGAGGCCAAACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00380 ko00630 ko01110 ko01130 ko01200 ko04011 ko04016 ko04068 ko04146 ko04211 ko04212 ko04213 ko05014 map00380 map00630 map01110 map01130 map01200 map04011 map04016 map04068 map04146 map04211 map04212 map04213 map05014

Pfam Domains

Protein Families

Catalase Catalase-rel

Protein Analysis

339

Amino Acids

39.61

Weight (kDa)

6.49

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Catalase	PF00199	1 - 245	5.9e-99	Catalase
Catalase-rel	PF06628	270 - 333	1.4e-15	Catalase-related immune-responsive

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20630 AT4G35090 AT4G35090 AT4G35090
fragaria_vesca	FvH4_5g25260 FvH4_5g25260
malus_domestica	MD06G1008600.v1.1 MD06G1009000.v1.1
prunus_persica	Prupe.5G011300_v2.0.a1
pyrus_communis	pycom06g00720 pycom06g00750
rosa_chinensis	RchiOBHm_Chr7g0215401
rosa_laevigata	RLG00000002664
rosa_multiflora	Rmu_sc0000355.1_g000002 Rmu_sc0005928.1_g000012
rosa_roxburghii	Rroxscaffold_3G00244220
rosa_rugosa	Rorug07G0153200
rosa_samantha	Rh7AG289700 Rh7BG281600
rosa_wichuraiana	Rw7G024750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	876
Acc36I	ACCTGC	1 cut(s)	876
AccB1I	GGYRCC	1 cut(s)	600
AccB7I	CCANNNNNTGG	1 cut(s)	417
AciI	CCGC	1 cut(s)	883
AclWI	GGATC	4 cut(s)	283, 359, 389, 950
AcoI	YGGCCR	1 cut(s)	451
AcsI	RAATTY	3 cut(s)	209, 383, 685
AcvI	CACGTG	1 cut(s)	228
AcyI	GRCGYC	1 cut(s)	897
AdeI	CACNNNGTG	1 cut(s)	205
AfiI	CCNNNNNNNGG	3 cut(s)	230, 417, 889
AflIII	ACRYGT	2 cut(s)	93, 227
AgsI	TTSAA	1 cut(s)	826
AjnI	CCWGG	3 cut(s)	117, 532, 832
AloI	GAACNNNNNNTCC	2 cut(s)	864, 896
AluBI	AGCT	2 cut(s)	323, 628
AluI	AGCT	2 cut(s)	323, 628
Alw26I	GTCTC	2 cut(s)	36, 960
AlwI	GGATC	4 cut(s)	283, 359, 389, 950
Ama87I	CYCGRG	1 cut(s)	422
AoxI	GGCC	4 cut(s)	419, 451, 610, 1007
ApeKI	GCWGC	4 cut(s)	320, 442, 625, 933
ApoI	RAATTY	3 cut(s)	209, 383, 685
ArsI	GACNNNNNNTTYG	2 cut(s)	470, 502
Asp700I	GAANNNNTTC	1 cut(s)	821
AspS9I	GGNCC	3 cut(s)	4, 420, 611
AsuHPI	GGTGA	3 cut(s)	91, 647, 659
AvaI	CYCGRG	1 cut(s)	422
AvaII	GGWCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	600
BarI	GAAGNNNNNNTAC	2 cut(s)	185, 217
BbrPI	CACGTG	1 cut(s)	228
BbvI	GCAGC	4 cut(s)	332, 454, 637, 945
BccI	CCATC	2 cut(s)	84, 730
BceAI	ACGGC	1 cut(s)	438
BciT130I	CCWGG	3 cut(s)	119, 534, 834
BclI	TGATCA	1 cut(s)	370
BcoDI	GTCTC	2 cut(s)	36, 960
BfmI	CTRYAG	2 cut(s)	440, 623
BfuAI	ACCTGC	1 cut(s)	876
BglII	AGATCT	2 cut(s)	301, 848
BisI	GCNGC	4 cut(s)	321, 443, 626, 934
BlsI	GCNGC	4 cut(s)	322, 444, 627, 935
Bme1390I	CCNGG	3 cut(s)	119, 534, 834
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	422
BmgT120I	GGNCC	3 cut(s)	4, 420, 611
BmiI	GGNNCC	2 cut(s)	126, 602
BmrFI	CCNGG	3 cut(s)	119, 534, 834
BmrI	ACTGGG	2 cut(s)	198, 626
BmsI	GCATC	1 cut(s)	998
BmuI	ACTGGG	2 cut(s)	198, 626
BpmI	CTGGAG	1 cut(s)	855
BsaAI	YACGTR	2 cut(s)	205, 228
BsaBI	GATNNNNATC	2 cut(s)	369, 847
BsaHI	GRCGYC	1 cut(s)	897
BsaI	GGTCTC	1 cut(s)	960
BsaJI	CCNNGG	3 cut(s)	118, 423, 532
BsaWI	WCCGGW	1 cut(s)	782
Bsc4I	CCNNNNNNNGG	3 cut(s)	230, 417, 889
Bse1I	ACTGG	5 cut(s)	193, 221, 446, 632, 956
Bse8I	GATNNNNATC	2 cut(s)	369, 847
BseBI	CCWGG	3 cut(s)	119, 534, 834
BseDI	CCNNGG	3 cut(s)	118, 423, 532
BseGI	GGATG	4 cut(s)	36, 76, 256, 706
BseJI	GATNNNNATC	2 cut(s)	369, 847
BseLI	CCNNNNNNNGG	3 cut(s)	230, 417, 889
BseMII	CTCAG	4 cut(s)	327, 608, 741, 971
BseNI	ACTGG	5 cut(s)	193, 221, 446, 632, 956
BseRI	GAGGAG	1 cut(s)	719
BseXI	GCAGC	4 cut(s)	332, 454, 637, 945
BseYI	CCCAGC	1 cut(s)	323
BsgI	GTGCAG	1 cut(s)	74
BshFI	GGCC	4 cut(s)	421, 453, 612, 1009
BshNI	GGYRCC	1 cut(s)	600
BsiHKCI	CYCGRG	1 cut(s)	422
BsiSI	CCGG	1 cut(s)	783
BslFI	GGGAC	1 cut(s)	515
BslI	CCNNNNNNNGG	3 cut(s)	230, 417, 889
BsmAI	GTCTC	2 cut(s)	36, 960
BsmFI	GGGAC	1 cut(s)	515
BsmI	GAATGC	2 cut(s)	509, 655
BsnI	GGCC	4 cut(s)	421, 453, 612, 1009
Bso31I	GGTCTC	1 cut(s)	960
BsoBI	CYCGRG	1 cut(s)	422
Bsp143I	GATC	7 cut(s)	275, 301, 364, 370, 394, 848, 942
BspACI	CCGC	1 cut(s)	883
BspANI	GGCC	4 cut(s)	421, 453, 612, 1009
BspCNI	CTCAG	4 cut(s)	328, 607, 742, 970
BspHI	TCATGA	1 cut(s)	373
BspLI	GGNNCC	2 cut(s)	126, 602
BspMAI	CTGCAG	2 cut(s)	444, 627
BspMI	ACCTGC	1 cut(s)	876
BspPI	GGATC	4 cut(s)	283, 359, 389, 950
BspT107I	GGYRCC	1 cut(s)	600
BspTNI	GGTCTC	1 cut(s)	960
BsrI	ACTGG	5 cut(s)	193, 221, 446, 632, 956
BssECI	CCNNGG	3 cut(s)	118, 423, 532
BssMI	GATC	7 cut(s)	275, 301, 364, 370, 394, 848, 942
BssNI	GRCGYC	1 cut(s)	897
Bst2UI	CCWGG	3 cut(s)	119, 534, 834
Bst4CI	ACNGT	1 cut(s)	605
Bst6I	CTCTTC	1 cut(s)	249
BstACI	GRCGYC	1 cut(s)	897
BstBAI	YACGTR	2 cut(s)	205, 228
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	4 cut(s)	336, 594, 750, 957
BstF5I	GGATG	4 cut(s)	36, 76, 256, 706
BstKTI	GATC	7 cut(s)	278, 304, 367, 373, 397, 851, 945
BstMAI	GTCTC	2 cut(s)	36, 960
BstMBI	GATC	7 cut(s)	275, 301, 364, 370, 394, 848, 942
BstMWI	GCNNNNNNNGC	1 cut(s)	442
BstNI	CCWGG	3 cut(s)	119, 534, 834
BstNSI	RCATGY	1 cut(s)	97
BstSCI	CCNGG	3 cut(s)	117, 532, 832
BstSFI	CTRYAG	2 cut(s)	440, 623
BstV1I	GCAGC	4 cut(s)	332, 454, 637, 945
BstX2I	RGATCY	4 cut(s)	275, 301, 848, 942
BstYI	RGATCY	4 cut(s)	275, 301, 848, 942
BsuRI	GGCC	4 cut(s)	421, 453, 612, 1009
BtsCI	GGATG	4 cut(s)	36, 76, 256, 706
BtsIMutI	CAGTG	1 cut(s)	214
BveI	ACCTGC	1 cut(s)	876
Cac8I	GCNNGC	1 cut(s)	89
CciI	TCATGA	1 cut(s)	373
Cfr13I	GGNCC	3 cut(s)	4, 420, 611
CseI	GACGC	1 cut(s)	905
CviAII	CATG	8 cut(s)	8, 94, 290, 374, 671, 691, 746, 923
DdeI	CTNAG	4 cut(s)	336, 594, 750, 957
DpnI	GATC	7 cut(s)	277, 303, 366, 372, 396, 850, 944
DpnII	GATC	7 cut(s)	275, 301, 364, 370, 394, 848, 942
DraIII	CACNNNGTG	1 cut(s)	205
EaeI	YGGCCR	1 cut(s)	451
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco31I	GGTCTC	1 cut(s)	960
Eco47I	GGWCC	1 cut(s)	4
Eco72I	CACGTG	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	422
EcoRII	CCWGG	3 cut(s)	117, 532, 832
FaeI	CATG	8 cut(s)	11, 97, 293, 377, 674, 694, 749, 926
FaqI	GGGAC	1 cut(s)	515
FatI	CATG	8 cut(s)	7, 93, 289, 373, 670, 690, 745, 922
FauNDI	CATATG	1 cut(s)	144
FbaI	TGATCA	1 cut(s)	370
Fnu4HI	GCNGC	4 cut(s)	321, 443, 626, 934
FokI	GGATG	4 cut(s)	23, 63, 263, 713
Fsp4HI	GCNGC	4 cut(s)	321, 443, 626, 934
GluI	GCNGC	4 cut(s)	321, 443, 626, 934
GsaI	CCCAGC	1 cut(s)	327
GsuI	CTGGAG	1 cut(s)	855
HaeIII	GGCC	4 cut(s)	421, 453, 612, 1009
HapII	CCGG	1 cut(s)	783
HgaI	GACGC	1 cut(s)	905
Hin1I	GRCGYC	1 cut(s)	897
Hin1II	CATG	8 cut(s)	11, 97, 293, 377, 674, 694, 749, 926
HinfI	GANTC	4 cut(s)	55, 234, 311, 928
HpaII	CCGG	1 cut(s)	783
HphI	GGTGA	3 cut(s)	91, 647, 659
Hpy166II	GTNNAC	2 cut(s)	99, 895
Hpy188I	TCNGA	7 cut(s)	357, 465, 550, 589, 597, 907, 981
Hpy188III	TCNNGA	4 cut(s)	59, 80, 368, 374
Hpy8I	GTNNAC	2 cut(s)	99, 895
HpyAV	CCTTC	6 cut(s)	112, 143, 187, 777, 780, 805
HpyCH4III	ACNGT	1 cut(s)	605
HpyCH4IV	ACGT	3 cut(s)	204, 227, 913
HpyF10VI	GCNNNNNNNGC	1 cut(s)	442
HpyF3I	CTNAG	4 cut(s)	336, 594, 750, 957
HpySE526I	ACGT	3 cut(s)	204, 227, 913
Hsp92I	GRCGYC	1 cut(s)	897
Hsp92II	CATG	8 cut(s)	11, 97, 293, 377, 674, 694, 749, 926
Ksp22I	TGATCA	1 cut(s)	370
Kzo9I	GATC	7 cut(s)	275, 301, 364, 370, 394, 848, 942
LmnI	GCTCC	3 cut(s)	567, 633, 646
Lsp1109I	GCAGC	4 cut(s)	332, 454, 637, 945
LweI	GCATC	1 cut(s)	998
MaeII	ACGT	3 cut(s)	204, 227, 913
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	7 cut(s)	277, 303, 366, 372, 396, 850, 944
MboI	GATC	7 cut(s)	275, 301, 364, 370, 394, 848, 942
MboII	GAAGA	2 cut(s)	266, 568
MfeI	CAATTG	1 cut(s)	360
MflI	RGATCY	4 cut(s)	275, 301, 848, 942
MluCI	AATT	8 cut(s)	46, 209, 328, 360, 383, 685, 712, 804
MlyI	GAGTC	2 cut(s)	243, 305
MmeI	TCCRAC	1 cut(s)	250
MroXI	GAANNNNTTC	1 cut(s)	821
MseI	TTAA	4 cut(s)	162, 264, 636, 711
MslI	CAYNNNNRTG	3 cut(s)	288, 699, 999
MspA1I	CMGCKG	1 cut(s)	323
MspI	CCGG	1 cut(s)	783
MspR9I	CCNGG	3 cut(s)	119, 534, 834
MunI	CAATTG	1 cut(s)	360
Mva1269I	GAATGC	2 cut(s)	509, 655
MvaI	CCWGG	3 cut(s)	119, 534, 834
MwoI	GCNNNNNNNGC	1 cut(s)	442
NdeI	CATATG	1 cut(s)	144
NdeII	GATC	7 cut(s)	275, 301, 364, 370, 394, 848, 942
NlaIII	CATG	8 cut(s)	11, 97, 293, 377, 674, 694, 749, 926
NlaIV	GGNNCC	2 cut(s)	126, 602
NmuCI	GTSAC	1 cut(s)	406
NspI	RCATGY	1 cut(s)	97
PagI	TCATGA	1 cut(s)	373
PaqCI	CACCTGC	1 cut(s)	876
PciI	ACATGT	1 cut(s)	93
PctI	GAATGC	2 cut(s)	509, 655
PdmI	GAANNNNTTC	1 cut(s)	821
PfeI	GAWTC	2 cut(s)	55, 928
PflMI	CCANNNNNTGG	1 cut(s)	417
PkrI	GCNGC	4 cut(s)	322, 444, 627, 935
PleI	GAGTC	2 cut(s)	242, 305
PmaCI	CACGTG	1 cut(s)	228
PmlI	CACGTG	1 cut(s)	228
PpsI	GAGTC	2 cut(s)	242, 305
Ppu21I	YACGTR	2 cut(s)	205, 228
PscI	ACATGT	1 cut(s)	93
Psp6I	CCWGG	3 cut(s)	117, 532, 832
PspCI	CACGTG	1 cut(s)	228
PspFI	CCCAGC	1 cut(s)	323
PspGI	CCWGG	3 cut(s)	117, 532, 832
PspN4I	GGNNCC	2 cut(s)	126, 602
PspPI	GGNCC	3 cut(s)	4, 420, 611
PstI	CTGCAG	2 cut(s)	444, 627
PsuI	RGATCY	4 cut(s)	275, 301, 848, 942
PvuII	CAGCTG	1 cut(s)	323
RseI	CAYNNNNRTG	3 cut(s)	288, 699, 999
SaqAI	TTAA	4 cut(s)	162, 264, 636, 711
SatI	GCNGC	4 cut(s)	321, 443, 626, 934
Sau3AI	GATC	7 cut(s)	275, 301, 364, 370, 394, 848, 942
Sau96I	GGNCC	3 cut(s)	4, 420, 611
SchI	GAGTC	2 cut(s)	243, 305
ScrFI	CCNGG	3 cut(s)	119, 534, 834
SfaNI	GCATC	1 cut(s)	998
SfcI	CTRYAG	2 cut(s)	440, 623
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	3 cut(s)	288, 699, 999
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	8 cut(s)	46, 209, 328, 360, 383, 685, 712, 804
SsiI	CCGC	1 cut(s)	883
StyD4I	CCNGG	3 cut(s)	117, 532, 832
TaaI	ACNGT	1 cut(s)	605
TaiI	ACGT	3 cut(s)	207, 230, 916
TaqI	TCGA	1 cut(s)	314
TasI	AATT	8 cut(s)	46, 209, 328, 360, 383, 685, 712, 804
TfiI	GAWTC	2 cut(s)	55, 928
Tru1I	TTAA	4 cut(s)	162, 264, 636, 711
Tru9I	TTAA	4 cut(s)	162, 264, 636, 711
TscAI	CASTG	1 cut(s)	221
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	4 cut(s)	320, 442, 625, 933
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	4 cut(s)	267, 513, 679, 698
TspRI	CASTG	1 cut(s)	221
Van91I	CCANNNNNTGG	1 cut(s)	417
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	3 cut(s)	209, 383, 685
XceI	RCATGY	1 cut(s)	97
XmnI	GAANNNNTTC	1 cut(s)	821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.