Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0010839

Physical Location & Seq

Genomic Coordinates Forward (+)

26354824 .. 26358844

Gene Structure 4021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG281600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGGATCCTTACAAGTACCGCCCTTCAAGTGCTTTCGATTCCCCTTTTTGGACCACCAACTCCGGTGCTCCAGTGTGGAACAACAACTCTTCTTTAACTGTTGGACAGAGAGGTCCAATTCTCCTCGAGGACTATCATTTGGTTGAGAAACTCGCCAATTTTGATAGGGAGCGAATCCCAGAGCGTGTTGTCCATGCTAGGGGAGCCAGTGCAAAGGGATTTTTTGAGGTCACCCATGATATTTCTCATCTTACATGTGCTGACTTCCTCCGAGCCCCTGGAGTTCAGACACCTGTCATTGTGCGTTTCTCAACTGTTATCCACGAGCGTGGCAGCCCTGAAACCCTGAGGGATCCTCGTGGTTTTGCAGTGAAGTTTTACACCAGAGAGGGCAATTTTGACTTGGTGGGAAACAATTTCCCTGTCTTTTTCGTCCGTGATGGAATGAAATTCCCGGACATGGTCCATGCTCTCAAGCCTAACCCGAAGTCTCACATCCAAGAGAATTGGAGGATTCTTGACTTCTTTTCCCACCATCCAGAAAGCCTGCACATGTTCACCTTCCTATTTGATGACCTGGGAGTTCCACAAGATTACAGGCATATGGAAGGCTCTGGTGTTAATACATACACTCTTATCAGTAAAGCTGGGAAGGCACACTACGTGAAATTTCACTGGAAACCCACGTGTGGAGTCAAGTGTTTATTGGATGAAGAGGCTTTTAAGGTTGGAGGATCTAATCACAGCCATGCTACCCAAGATCTCTATGACTCGATTGCAGCTGGGAATTACCCTGAGTGGAAACTTTACATTCAGACAATTGATCCTGATCATGAGGACAAATTTGACTTTGATCCACTTGATGTGACCAAGACTTGGCCCGAGGATATTCTGCCCCTGCAGCCAGTTGGCCGTTTGGTTCTGAATAGAAACATCGACAACTTCTTTGCAGAGAATGAACAACTTGCATTCTGCCCTGCCATTATTGTCCCTGGTGTCTATTATTCAGATGACAAGTTGCTCCAAACTCGTATCTTCTCATATTCTGACACTCAGAGGCACCGTCTTGGCCCAAACTATCTGCAGCTCCCAGTTAATGCTCCCAAGAATGCTCACCACAACAATCACCATGAGGGATTGATGAATTTCATGCACAGGGATGAGGAGGTTAATTACTTCCCATCAAGGTTTGACCCTGTTTGTCATGCTGAGAGCCACCCCATTCCTTCTGCTGTCATTACCGGAAGGCGTGAGAAGGTACAGTTTTATCAATTCAGCAATGTTGATTCGAGTTTTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00380 ko00630 ko01110 ko01130 ko01200 ko04011 ko04016 ko04068 ko04146 ko04211 ko04212 ko04213 ko05014 map00380 map00630 map01110 map01130 map01200 map04011 map04016 map04068 map04146 map04211 map04212 map04213 map05014

Pfam Domains

Protein Families

Catalase Catalase-rel

Protein Analysis

433

Amino Acids

49.77

Weight (kDa)

6.1

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Catalase	PF00199	18 - 398	3.4e-175	Catalase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20630 AT4G35090 AT4G35090 AT4G35090
fragaria_vesca	FvH4_5g25260 FvH4_5g25260
malus_domestica	MD06G1008600.v1.1 MD06G1009000.v1.1
prunus_persica	Prupe.5G011300_v2.0.a1
pyrus_communis	pycom06g00720 pycom06g00750
rosa_chinensis	RchiOBHm_Chr7g0215401
rosa_laevigata	RLG00000002664
rosa_multiflora	Rmu_sc0000355.1_g000002 Rmu_sc0005928.1_g000012
rosa_roxburghii	Rroxscaffold_3G00244220
rosa_rugosa	Rorug07G0153200
rosa_samantha	Rh7AG289700 Rh7BG281600
rosa_wichuraiana	Rw7G024750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	111
AbsI	CCTCGAGG	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	1059
AccB7I	CCANNNNNTGG	1 cut(s)	876
AciI	CCGC	1 cut(s)	19
AclWI	GGATC	6 cut(s)	12, 347, 360, 742, 818, 848
AcoI	YGGCCR	1 cut(s)	910
AcsI	RAATTY	4 cut(s)	449, 668, 842, 1144
AcvI	CACGTG	1 cut(s)	687
AdeI	CACNNNGTG	1 cut(s)	664
AfaI	GTAC	2 cut(s)	17, 1260
AfiI	CCNNNNNNNGG	5 cut(s)	48, 199, 460, 689, 876
AflIII	ACRYGT	3 cut(s)	254, 552, 686
AgsI	TTSAA	1 cut(s)	27
AjnI	CCWGG	3 cut(s)	277, 576, 991
AleI	CACNNNNGTG	1 cut(s)	327
AluBI	AGCT	3 cut(s)	647, 782, 1087
AluI	AGCT	3 cut(s)	647, 782, 1087
Alw21I	GWGCWC	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	495
AlwI	GGATC	6 cut(s)	12, 347, 360, 742, 818, 848
Ama87I	CYCGRG	2 cut(s)	125, 881
AoxI	GGCC	3 cut(s)	878, 910, 1069
ApeKI	GCWGC	4 cut(s)	333, 779, 901, 1084
ApoI	RAATTY	4 cut(s)	449, 668, 842, 1144
ArsI	GACNNNNNNTTYG	2 cut(s)	929, 961
AspS9I	GGNCC	5 cut(s)	51, 113, 463, 879, 1070
AsuC2I	CCSGG	1 cut(s)	455
AsuHPI	GGTGA	4 cut(s)	223, 550, 1106, 1118
AvaI	CYCGRG	2 cut(s)	125, 881
AvaII	GGWCC	3 cut(s)	51, 113, 463
AxyI	CCTNAGG	1 cut(s)	347
BamHI	GGATCC	2 cut(s)	4, 352
BanI	GGYRCC	1 cut(s)	1059
BanII	GRGCYC	1 cut(s)	277
BarI	GAAGNNNNNNTAC	2 cut(s)	644, 676
BauI	CACGAG	2 cut(s)	323, 357
BbrPI	CACGTG	1 cut(s)	687
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	4 cut(s)	345, 791, 913, 1096
BccI	CCATC	3 cut(s)	434, 543, 1189
BceAI	ACGGC	1 cut(s)	897
BciT130I	CCWGG	3 cut(s)	279, 578, 993
BclI	TGATCA	1 cut(s)	829
BcnI	CCSGG	1 cut(s)	455
BcoDI	GTCTC	1 cut(s)	495
BfaI	CTAG	1 cut(s)	198
BfmI	CTRYAG	2 cut(s)	899, 1082
BglII	AGATCT	1 cut(s)	760
BisI	GCNGC	4 cut(s)	334, 780, 902, 1085
BlsI	GCNGC	4 cut(s)	335, 781, 903, 1086
Bme1390I	CCNGG	4 cut(s)	279, 455, 578, 993
Bme18I	GGWCC	3 cut(s)	51, 113, 463
BmeT110I	CYCGRG	2 cut(s)	125, 881
BmgT120I	GGNCC	5 cut(s)	51, 113, 463, 879, 1070
BmiI	GGNNCC	4 cut(s)	6, 205, 354, 1061
BmrFI	CCNGG	4 cut(s)	279, 455, 578, 993
BmrI	ACTGGG	1 cut(s)	1085
BmuI	ACTGGG	1 cut(s)	1085
BoxI	GACNNNNGTC	1 cut(s)	293
BplI	GAGNNNNNCTC	2 cut(s)	340, 372
BpmI	CTGGAG	2 cut(s)	54, 300
BpuEI	CTTGAG	1 cut(s)	458
BpuMI	CCSGG	1 cut(s)	455
BsaAI	YACGTR	2 cut(s)	664, 687
BsaBI	GATNNNNATC	1 cut(s)	828
BsaJI	CCNNGG	4 cut(s)	277, 577, 882, 991
BsaWI	WCCGGW	2 cut(s)	62, 1241
Bsc4I	CCNNNNNNNGG	5 cut(s)	48, 199, 460, 689, 876
Bse1I	ACTGG	5 cut(s)	71, 207, 680, 905, 1091
Bse21I	CCTNAGG	1 cut(s)	347
Bse3DI	GCAATG	1 cut(s)	1285
Bse8I	GATNNNNATC	1 cut(s)	828
BseBI	CCWGG	3 cut(s)	279, 578, 993
BseDI	CCNNGG	4 cut(s)	277, 577, 882, 991
BseGI	GGATG	4 cut(s)	495, 535, 715, 1165
BseJI	GATNNNNATC	1 cut(s)	828
BseLI	CCNNNNNNNGG	5 cut(s)	48, 199, 460, 689, 876
BseMI	GCAATG	1 cut(s)	1285
BseMII	CTCAG	4 cut(s)	338, 786, 1067, 1200
BseNI	ACTGG	5 cut(s)	71, 207, 680, 905, 1091
BseRI	GAGGAG	2 cut(s)	113, 1178
BseXI	GCAGC	4 cut(s)	345, 791, 913, 1096
BseYI	CCCAGC	2 cut(s)	647, 782
BsgI	GTGCAG	1 cut(s)	533
BshFI	GGCC	3 cut(s)	880, 912, 1071
BshNI	GGYRCC	1 cut(s)	1059
BsiHKAI	GWGCWC	1 cut(s)	70
BsiHKCI	CYCGRG	2 cut(s)	125, 881
BsiSI	CCGG	3 cut(s)	63, 455, 1242
BslFI	GGGAC	1 cut(s)	974
BslI	CCNNNNNNNGG	5 cut(s)	48, 199, 460, 689, 876
BsmAI	GTCTC	1 cut(s)	495
BsmFI	GGGAC	1 cut(s)	974
BsmI	GAATGC	2 cut(s)	968, 1114
BsnI	GGCC	3 cut(s)	880, 912, 1071
BsoBI	CYCGRG	2 cut(s)	125, 881
Bsp1286I	GDGCHC	2 cut(s)	70, 277
Bsp143I	GATC	7 cut(s)	4, 352, 734, 760, 823, 829, 853
BspACI	CCGC	1 cut(s)	19
BspANI	GGCC	3 cut(s)	880, 912, 1071
BspCNI	CTCAG	4 cut(s)	339, 787, 1066, 1201
BspHI	TCATGA	1 cut(s)	832
BspLI	GGNNCC	4 cut(s)	6, 205, 354, 1061
BspMAI	CTGCAG	2 cut(s)	903, 1086
BspPI	GGATC	6 cut(s)	12, 347, 360, 742, 818, 848
BspT107I	GGYRCC	1 cut(s)	1059
BsrDI	GCAATG	1 cut(s)	1285
BsrI	ACTGG	5 cut(s)	71, 207, 680, 905, 1091
BssECI	CCNNGG	4 cut(s)	277, 577, 882, 991
BssMI	GATC	7 cut(s)	4, 352, 734, 760, 823, 829, 853
BssSI	CACGAG	2 cut(s)	323, 357
Bst2BI	CACGAG	2 cut(s)	323, 357
Bst2UI	CCWGG	3 cut(s)	279, 578, 993
Bst4CI	ACNGT	4 cut(s)	100, 316, 1064, 1263
Bst6I	CTCTTC	2 cut(s)	94, 708
BstBAI	YACGTR	2 cut(s)	664, 687
BstC8I	GCNNGC	1 cut(s)	548
BstDEI	CTNAG	4 cut(s)	347, 795, 1053, 1209
BstEII	GGTNACC	1 cut(s)	229
BstF5I	GGATG	4 cut(s)	495, 535, 715, 1165
BstKTI	GATC	7 cut(s)	7, 355, 737, 763, 826, 832, 856
BstMAI	GTCTC	1 cut(s)	495
BstMBI	GATC	7 cut(s)	4, 352, 734, 760, 823, 829, 853
BstMWI	GCNNNNNNNGC	3 cut(s)	203, 653, 901
BstNI	CCWGG	3 cut(s)	279, 578, 993
BstNSI	RCATGY	2 cut(s)	258, 556
BstPAI	GACNNNNGTC	1 cut(s)	293
BstPI	GGTNACC	1 cut(s)	229
BstSCI	CCNGG	4 cut(s)	277, 453, 576, 991
BstSFI	CTRYAG	2 cut(s)	899, 1082
BstV1I	GCAGC	4 cut(s)	345, 791, 913, 1096
BstX2I	RGATCY	4 cut(s)	4, 352, 734, 760
BstXI	CCANNNNNNTGG	1 cut(s)	329
BstYI	RGATCY	4 cut(s)	4, 352, 734, 760
Bsu36I	CCTNAGG	1 cut(s)	347
BsuRI	GGCC	3 cut(s)	880, 912, 1071
BtsCI	GGATG	4 cut(s)	495, 535, 715, 1165
BtsI	GCAGTG	1 cut(s)	375
BtsIMutI	CAGTG	4 cut(s)	78, 214, 375, 673
Cac8I	GCNNGC	1 cut(s)	548
CciI	TCATGA	1 cut(s)	832
Cfr13I	GGNCC	5 cut(s)	51, 113, 463, 879, 1070
Csp6I	GTAC	2 cut(s)	16, 1259
CviQI	GTAC	2 cut(s)	16, 1259
DdeI	CTNAG	4 cut(s)	347, 795, 1053, 1209
DpnI	GATC	7 cut(s)	6, 354, 736, 762, 825, 831, 855
DpnII	GATC	7 cut(s)	4, 352, 734, 760, 823, 829, 853
DraIII	CACNNNGTG	1 cut(s)	664
DrdI	GACNNNNNNGTC	1 cut(s)	111
DseDI	GACNNNNNNGTC	1 cut(s)	111
EaeI	YGGCCR	1 cut(s)	910
Eam1104I	CTCTTC	2 cut(s)	94, 708
EarI	CTCTTC	2 cut(s)	94, 708
Eco24I	GRGCYC	1 cut(s)	277
Eco47I	GGWCC	3 cut(s)	51, 113, 463
Eco72I	CACGTG	1 cut(s)	687
Eco81I	CCTNAGG	1 cut(s)	347
Eco88I	CYCGRG	2 cut(s)	125, 881
Eco91I	GGTNACC	1 cut(s)	229
EcoO65I	GGTNACC	1 cut(s)	229
EcoRII	CCWGG	3 cut(s)	277, 576, 991
EcoT38I	GRGCYC	1 cut(s)	277
FaqI	GGGAC	1 cut(s)	974
FauNDI	CATATG	1 cut(s)	603
FbaI	TGATCA	1 cut(s)	829
Fnu4HI	GCNGC	4 cut(s)	334, 780, 902, 1085
FokI	GGATG	4 cut(s)	482, 522, 722, 1172
FriOI	GRGCYC	1 cut(s)	277
Fsp4HI	GCNGC	4 cut(s)	334, 780, 902, 1085
FspBI	CTAG	1 cut(s)	198
GluI	GCNGC	4 cut(s)	334, 780, 902, 1085
GsaI	CCCAGC	2 cut(s)	651, 786
GsuI	CTGGAG	2 cut(s)	54, 300
HaeIII	GGCC	3 cut(s)	880, 912, 1071
HapII	CCGG	3 cut(s)	63, 455, 1242
HinfI	GANTC	6 cut(s)	38, 174, 514, 693, 770, 1286
HpaII	CCGG	3 cut(s)	63, 455, 1242
HphI	GGTGA	4 cut(s)	223, 550, 1106, 1118
Hpy166II	GTNNAC	1 cut(s)	558
Hpy188I	TCNGA	7 cut(s)	272, 288, 816, 924, 1009, 1048, 1056
Hpy188III	TCNNGA	4 cut(s)	518, 539, 827, 833
Hpy8I	GTNNAC	1 cut(s)	558
HpyAV	CCTTC	7 cut(s)	33, 571, 602, 646, 1236, 1239, 1249
HpyCH4III	ACNGT	4 cut(s)	100, 316, 1064, 1263
HpyCH4IV	ACGT	2 cut(s)	663, 686
HpyCH4V	TGCA	9 cut(s)	212, 368, 550, 779, 901, 950, 968, 1084, 1153
HpyF10VI	GCNNNNNNNGC	3 cut(s)	203, 653, 901
HpyF3I	CTNAG	4 cut(s)	347, 795, 1053, 1209
HpySE526I	ACGT	2 cut(s)	663, 686
Ksp22I	TGATCA	1 cut(s)	829
Kzo9I	GATC	7 cut(s)	4, 352, 734, 760, 823, 829, 853
LmnI	GCTCC	6 cut(s)	73, 169, 203, 1026, 1092, 1105
Lsp1109I	GCAGC	4 cut(s)	345, 791, 913, 1096
MaeI	CTAG	1 cut(s)	198
MaeII	ACGT	2 cut(s)	663, 686
MaeIII	GTNAC	2 cut(s)	229, 865
MalI	GATC	7 cut(s)	6, 354, 736, 762, 825, 831, 855
MboI	GATC	7 cut(s)	4, 352, 734, 760, 823, 829, 853
MboII	GAAGA	3 cut(s)	81, 725, 1027
MfeI	CAATTG	1 cut(s)	819
MflI	RGATCY	4 cut(s)	4, 352, 734, 760
MhlI	GDGCHC	2 cut(s)	70, 277
MlyI	GAGTC	2 cut(s)	702, 764
MmeI	TCCRAC	2 cut(s)	82, 709
MseI	TTAA	5 cut(s)	95, 621, 723, 1095, 1170
MslI	CAYNNNNRTG	3 cut(s)	327, 747, 1158
MspA1I	CMGCKG	1 cut(s)	782
MspI	CCGG	3 cut(s)	63, 455, 1242
MspR9I	CCNGG	4 cut(s)	279, 455, 578, 993
MunI	CAATTG	1 cut(s)	819
Mva1269I	GAATGC	2 cut(s)	968, 1114
MvaI	CCWGG	3 cut(s)	279, 578, 993
MwoI	GCNNNNNNNGC	3 cut(s)	203, 653, 901
NciI	CCSGG	1 cut(s)	455
NdeI	CATATG	1 cut(s)	603
NdeII	GATC	7 cut(s)	4, 352, 734, 760, 823, 829, 853
NlaIV	GGNNCC	4 cut(s)	6, 205, 354, 1061
NmuCI	GTSAC	2 cut(s)	229, 865
NspI	RCATGY	2 cut(s)	258, 556
OliI	CACNNNNGTG	1 cut(s)	327
PaeR7I	CTCGAG	1 cut(s)	125
PagI	TCATGA	1 cut(s)	832
PciI	ACATGT	2 cut(s)	254, 552
PctI	GAATGC	2 cut(s)	968, 1114
PfeI	GAWTC	4 cut(s)	38, 174, 514, 1286
PflFI	GACNNNGTC	1 cut(s)	461
PflMI	CCANNNNNTGG	1 cut(s)	876
PfoI	TCCNGGA	1 cut(s)	453
PkrI	GCNGC	4 cut(s)	335, 781, 903, 1086
PleI	GAGTC	2 cut(s)	701, 764
PmaCI	CACGTG	1 cut(s)	687
PmlI	CACGTG	1 cut(s)	687
PpsI	GAGTC	2 cut(s)	701, 764
Ppu21I	YACGTR	2 cut(s)	664, 687
PscI	ACATGT	2 cut(s)	254, 552
PshAI	GACNNNNGTC	1 cut(s)	293
Psp6I	CCWGG	3 cut(s)	277, 576, 991
PspCI	CACGTG	1 cut(s)	687
PspEI	GGTNACC	1 cut(s)	229
PspFI	CCCAGC	2 cut(s)	647, 782
PspGI	CCWGG	3 cut(s)	277, 576, 991
PspN4I	GGNNCC	4 cut(s)	6, 205, 354, 1061
PspPI	GGNCC	5 cut(s)	51, 113, 463, 879, 1070
PspXI	VCTCGAGB	1 cut(s)	125
PstI	CTGCAG	2 cut(s)	903, 1086
PsuI	RGATCY	4 cut(s)	4, 352, 734, 760
PsyI	GACNNNGTC	1 cut(s)	461
PvuII	CAGCTG	1 cut(s)	782
RsaI	GTAC	2 cut(s)	17, 1260
RsaNI	GTAC	2 cut(s)	16, 1259
RseI	CAYNNNNRTG	3 cut(s)	327, 747, 1158
SaqAI	TTAA	5 cut(s)	95, 621, 723, 1095, 1170
SatI	GCNGC	4 cut(s)	334, 780, 902, 1085
Sau3AI	GATC	7 cut(s)	4, 352, 734, 760, 823, 829, 853
Sau96I	GGNCC	5 cut(s)	51, 113, 463, 879, 1070
SchI	GAGTC	2 cut(s)	702, 764
ScrFI	CCNGG	4 cut(s)	279, 455, 578, 993
SduI	GDGCHC	2 cut(s)	70, 277
SfcI	CTRYAG	2 cut(s)	899, 1082
Sfr274I	CTCGAG	1 cut(s)	125
SinI	GGWCC	3 cut(s)	51, 113, 463
SlaI	CTCGAG	1 cut(s)	125
SmiMI	CAYNNNNRTG	3 cut(s)	327, 747, 1158
SmlI	CTYRAG	2 cut(s)	125, 473
SmoI	CTYRAG	2 cut(s)	125, 473
SsiI	CCGC	1 cut(s)	19
SspMI	CTAG	1 cut(s)	198
StyD4I	CCNGG	4 cut(s)	277, 453, 576, 991
TaaI	ACNGT	4 cut(s)	100, 316, 1064, 1263
TaiI	ACGT	2 cut(s)	666, 689
TaqI	TCGA	5 cut(s)	36, 126, 773, 936, 1289
TfiI	GAWTC	4 cut(s)	38, 174, 514, 1286
Tru1I	TTAA	5 cut(s)	95, 621, 723, 1095, 1170
Tru9I	TTAA	5 cut(s)	95, 621, 723, 1095, 1170
TscAI	CASTG	4 cut(s)	78, 214, 375, 680
TseFI	GTSAC	2 cut(s)	229, 865
TseI	GCWGC	4 cut(s)	333, 779, 901, 1084
Tsp45I	GTSAC	2 cut(s)	229, 865
TspDTI	ATGAA	5 cut(s)	461, 726, 972, 1138, 1157
TspGWI	ACGGA	1 cut(s)	425
TspRI	CASTG	4 cut(s)	78, 214, 375, 680
Tth111I	GACNNNGTC	1 cut(s)	461
Van91I	CCANNNNNTGG	1 cut(s)	876
VpaK11BI	GGWCC	3 cut(s)	51, 113, 463
XapI	RAATTY	4 cut(s)	449, 668, 842, 1144
XceI	RCATGY	2 cut(s)	258, 556
XhoI	CTCGAG	1 cut(s)	125
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.