Rorug07G0153200

Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
12158507 .. 12159497
991 bp
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UTR
Exon/CDS
Intron
Rorug07G0153200.1

Sequence Viewer

Length: 648 bp
ATGGCTGAGAAAGACCAGCAGGCCTACGCATCAACAAATGGCTACACCAGATCAAATGATCACGAATCAGCCGGAACCACCTTCCAATCCGAGGAGGAGCTGAAACGCCAGAAGAGAAGGAAGTTGTTTATGTATATTGGTATTTTCATTGTCTTTCAAATCATAGTCATGACCGTATTCGGTCTCACTGTCATGAAAGTTAAGACCCCTAAGCTCCGGTTGGGTAACATCGAAGTCCAAAACCTCAACTTTACTTCCCAAACATCACCTTCTTTCGACATGACCTTCACAACGCAAATTAGAGTCAAGAACACGAATTTTGGTCCCTACAAATATGATAGTAGCTATGTCACGTTTTTGTACCAGGGGATGCCATTAGTGCAGGTTACAATTCCTAAAGGTAAGGCTGGGTGGCGTTCCACTGAAAAAATTGGAGCCACCGCGATTTTGAATTCCAAGGCATTGCCGAGTGTTTCAAATCTTGGCAGTGATTTAGATTCAGGGGTGTTGAAGCTGAGCAGCCAAGCAAAGATTAGTGGAAAAGTTGAGTTGATGTTTGTGATGAAGAAGAAGAAATCTGCAGAGATGAATTGCACCATTGAAGTTAATTTGGCAACCAAGGGGGTTCAGGCATTGGAGTGCAAGTGA

Protein Analysis

215

Amino Acids

23.98

Weight (kDa)

9.68

Isoelectric Point (pI)

45.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010839)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 373
AccII CGCG 1 cut(s) 443
AciI CCGC 1 cut(s) 441
AcsI RAATTY 2 cut(s) 316, 451
AfaI GTAC 1 cut(s) 362
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 5 cut(s) 158, 451, 477, 511, 602
AjnI CCWGG 1 cut(s) 363
AluBI AGCT 4 cut(s) 100, 214, 345, 514
AluI AGCT 4 cut(s) 100, 214, 345, 514
Alw26I GTCTC 1 cut(s) 188
AoxI GGCC 1 cut(s) 21
ApeKI GCWGC 1 cut(s) 519
ApoI RAATTY 2 cut(s) 316, 451
AspS9I GGNCC 1 cut(s) 323
AsuHPI GGTGA 1 cut(s) 258
AvaII GGWCC 1 cut(s) 323
BbvI GCAGC 1 cut(s) 531
BciT130I CCWGG 1 cut(s) 365
BclI TGATCA 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 188
BfmI CTRYAG 1 cut(s) 579
BfuAI ACCTGC 1 cut(s) 373
BisI GCNGC 1 cut(s) 520
BlpI GCTNAGC 1 cut(s) 515
BlsI GCNGC 1 cut(s) 521
Bme1390I CCNGG 1 cut(s) 365
Bme18I GGWCC 1 cut(s) 323
BmgT120I GGNCC 1 cut(s) 323
BmiI GGNNCC 3 cut(s) 76, 325, 436
BmrFI CCNGG 1 cut(s) 365
BmsI GCATC 2 cut(s) 38, 360
Bpu10I CCTNAGC 1 cut(s) 210
Bpu1102I GCTNAGC 1 cut(s) 515
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 4 cut(s) 90, 364, 456, 618
BsaWI WCCGGW 1 cut(s) 216
BsaXI ACNNNNNCTCC 1 cut(s) 629
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse3DI GCAATG 1 cut(s) 461
BseBI CCWGG 1 cut(s) 365
BseDI CCNNGG 4 cut(s) 90, 364, 456, 618
BseGI GGATG 1 cut(s) 375
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMI GCAATG 1 cut(s) 461
BseMII CTCAG 1 cut(s) 506
BseRI GAGGAG 2 cut(s) 107, 110
BseXI GCAGC 1 cut(s) 531
BseYI CCCAGC 1 cut(s) 407
BsgI GTGCAG 1 cut(s) 401
Bsh1236I CGCG 1 cut(s) 443
BshFI GGCC 1 cut(s) 23
BsiSI CCGG 2 cut(s) 72, 217
BslFI GGGAC 1 cut(s) 309
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 1 cut(s) 188
BsmFI GGGAC 1 cut(s) 309
BsnI GGCC 1 cut(s) 23
Bso31I GGTCTC 1 cut(s) 188
Bsp143I GATC 2 cut(s) 50, 58
Bsp1720I GCTNAGC 1 cut(s) 515
BspACI CCGC 1 cut(s) 441
BspANI GGCC 1 cut(s) 23
BspCNI CTCAG 1 cut(s) 507
BspFNI CGCG 1 cut(s) 443
BspHI TCATGA 2 cut(s) 168, 192
BspLI GGNNCC 3 cut(s) 76, 325, 436
BspMAI CTGCAG 1 cut(s) 583
BspMI ACCTGC 1 cut(s) 373
BspTNI GGTCTC 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 461
BssECI CCNNGG 4 cut(s) 90, 364, 456, 618
BssMI GATC 2 cut(s) 50, 58
BssT1I CCWWGG 2 cut(s) 456, 618
Bst2UI CCWGG 1 cut(s) 365
Bst4CI ACNGT 2 cut(s) 175, 190
Bst6I CTCTTC 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 3 cut(s) 6, 210, 515
BstF5I GGATG 1 cut(s) 375
BstFNI CGCG 1 cut(s) 443
BstKTI GATC 2 cut(s) 53, 61
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 2 cut(s) 50, 58
BstMWI GCNNNNNNNGC 1 cut(s) 379
BstNI CCWGG 1 cut(s) 365
BstSCI CCNGG 1 cut(s) 363
BstSFI CTRYAG 1 cut(s) 579
BstUI CGCG 1 cut(s) 443
BstV1I GCAGC 1 cut(s) 531
BsuRI GGCC 1 cut(s) 23
BtsCI GGATG 1 cut(s) 375
BtsI GCAGTG 1 cut(s) 493
BtsIMutI CAGTG 3 cut(s) 186, 420, 493
BveI ACCTGC 1 cut(s) 373
Cac8I GCNNGC 1 cut(s) 21
CciI TCATGA 2 cut(s) 168, 192
Cfr13I GGNCC 1 cut(s) 323
Csp6I GTAC 1 cut(s) 361
CviAII CATG 3 cut(s) 169, 193, 280
CviQI GTAC 1 cut(s) 361
DdeI CTNAG 3 cut(s) 6, 210, 515
DpnI GATC 2 cut(s) 52, 60
DpnII GATC 2 cut(s) 50, 58
Eam1104I CTCTTC 1 cut(s) 107
EarI CTCTTC 1 cut(s) 107
Eco130I CCWWGG 2 cut(s) 456, 618
Eco147I AGGCCT 1 cut(s) 23
Eco31I GGTCTC 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 323
EcoRI GAATTC 1 cut(s) 451
EcoRII CCWGG 1 cut(s) 363
EcoT14I CCWWGG 2 cut(s) 456, 618
ErhI CCWWGG 2 cut(s) 456, 618
FaeI CATG 3 cut(s) 172, 196, 283
FaiI YATR 8 cut(s) 131, 135, 164, 170, 194, 281, 336, 348
FaqI GGGAC 1 cut(s) 309
FatI CATG 3 cut(s) 168, 192, 279
FbaI TGATCA 1 cut(s) 58
Fnu4HI GCNGC 1 cut(s) 520
FokI GGATG 1 cut(s) 382
Fsp4HI GCNGC 1 cut(s) 520
GluI GCNGC 1 cut(s) 520
GsaI CCCAGC 1 cut(s) 411
HaeIII GGCC 1 cut(s) 23
HapII CCGG 2 cut(s) 72, 217
Hin1II CATG 3 cut(s) 172, 196, 283
HinfI GANTC 3 cut(s) 65, 303, 497
HpaII CCGG 2 cut(s) 72, 217
HphI GGTGA 1 cut(s) 258
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 4 cut(s) 62, 169, 193, 307
HpyAV CCTTC 4 cut(s) 91, 111, 279, 295
HpyCH4III ACNGT 2 cut(s) 175, 190
HpyCH4IV ACGT 1 cut(s) 353
HpyCH4V TGCA 4 cut(s) 382, 581, 594, 642
HpyF10VI GCNNNNNNNGC 1 cut(s) 379
HpyF3I CTNAG 3 cut(s) 6, 210, 515
HpySE526I ACGT 1 cut(s) 353
Hsp92II CATG 3 cut(s) 172, 196, 283
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 2 cut(s) 50, 58
LmnI GCTCC 3 cut(s) 97, 219, 434
Lsp1109I GCAGC 1 cut(s) 531
LweI GCATC 2 cut(s) 38, 360
MaeII ACGT 1 cut(s) 353
MaeIII GTNAC 3 cut(s) 224, 349, 385
MalI GATC 2 cut(s) 52, 60
MboI GATC 2 cut(s) 50, 58
MboII GAAGA 4 cut(s) 124, 577, 580, 583
MluCI AATT 7 cut(s) 297, 316, 390, 429, 451, 589, 607
MlyI GAGTC 1 cut(s) 312
MnlI CCTC 3 cut(s) 85, 88, 254
MseI TTAA 2 cut(s) 201, 606
MslI CAYNNNNRTG 3 cut(s) 167, 191, 637
MspI CCGG 2 cut(s) 72, 217
MspR9I CCNGG 1 cut(s) 365
MvaI CCWGG 1 cut(s) 365
MvnI CGCG 1 cut(s) 443
MwoI GCNNNNNNNGC 1 cut(s) 379
NdeII GATC 2 cut(s) 50, 58
NlaIII CATG 3 cut(s) 172, 196, 283
NlaIV GGNNCC 3 cut(s) 76, 325, 436
NmeAIII GCCGAG 1 cut(s) 492
NmuCI GTSAC 1 cut(s) 349
PagI TCATGA 2 cut(s) 168, 192
PceI AGGCCT 1 cut(s) 23
PfeI GAWTC 2 cut(s) 65, 497
PkrI GCNGC 1 cut(s) 521
PleI GAGTC 1 cut(s) 311
PpsI GAGTC 1 cut(s) 311
Psp6I CCWGG 1 cut(s) 363
PspFI CCCAGC 1 cut(s) 407
PspGI CCWGG 1 cut(s) 363
PspN4I GGNNCC 3 cut(s) 76, 325, 436
PspPI GGNCC 1 cut(s) 323
PstI CTGCAG 1 cut(s) 583
RsaI GTAC 1 cut(s) 362
RsaNI GTAC 1 cut(s) 361
RseI CAYNNNNRTG 3 cut(s) 167, 191, 637
SaqAI TTAA 2 cut(s) 201, 606
SatI GCNGC 1 cut(s) 520
Sau3AI GATC 2 cut(s) 50, 58
Sau96I GGNCC 1 cut(s) 323
SchI GAGTC 1 cut(s) 312
ScrFI CCNGG 1 cut(s) 365
SfaNI GCATC 2 cut(s) 38, 360
SfcI CTRYAG 1 cut(s) 579
SinI GGWCC 1 cut(s) 323
SmiMI CAYNNNNRTG 3 cut(s) 167, 191, 637
Sse9I AATT 7 cut(s) 297, 316, 390, 429, 451, 589, 607
SseBI AGGCCT 1 cut(s) 23
SsiI CCGC 1 cut(s) 441
StuI AGGCCT 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 363
StyI CCWWGG 2 cut(s) 456, 618
TaaI ACNGT 2 cut(s) 175, 190
TaiI ACGT 1 cut(s) 356
TaqI TCGA 2 cut(s) 231, 276
TaqII GACCGA 1 cut(s) 170
TasI AATT 7 cut(s) 297, 316, 390, 429, 451, 589, 607
TfiI GAWTC 2 cut(s) 65, 497
Tru1I TTAA 2 cut(s) 201, 606
Tru9I TTAA 2 cut(s) 201, 606
TscAI CASTG 3 cut(s) 193, 427, 493
TseFI GTSAC 1 cut(s) 349
TseI GCWGC 1 cut(s) 519
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 4 cut(s) 136, 209, 578, 602
TspRI CASTG 3 cut(s) 193, 427, 493
VpaK11BI GGWCC 1 cut(s) 323
XapI RAATTY 2 cut(s) 316, 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.