Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009396

Physical Location & Seq

Genomic Coordinates Forward (+)

17666053 .. 17668031

Gene Structure 1979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g26200.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGACGAGCAATTGGAAGAGGACAGTGGGAAATGTGAGGTCATTCATCGGCAATTCCATGGGAGGCCTACGAGGTGGAAGCAACTTGGCCTCGTGGGTCGTCGCCGGAACCCTAGCCTACTTCCTCTGGGTCAAGCCCTCGCAAGAACTCAAGCGTGAACAACAGGAAAGGGCTGCTATGGCAGCTTTGGCAGAAGCTTCAAACCCAAATAGATATATAGAGAAACGGAAACCCGTTCCGGATCCACAGGAGACTGGATTGATATATGGAAACAAGAATAGAAGTAGGAGACCAGATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

101

Amino Acids

11.21

Weight (kDa)

10.26

Isoelectric Point (pI)

57.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33585 AT2G33585
fragaria_vesca	FvH4_5g26200 FvH4_5g26200 FvH4_5g26200 FvH4_5g26200
malus_domestica	MD06G1003100.v1.1
prunus_persica	Prupe.1G298300_v2.0.a1 Prupe.1G298300_v2.0.a1 Prupe.1G298300_v2.0.a1 Prupe.1G298300_v2.0.a1
pyrus_communis	pycom06g00320
rosa_chinensis	RchiOBHm_Chr7g0216881
rosa_multiflora	Rmu_co8325253.1_g000001 Rmu_sc0000854.1_g000015
rosa_roxburghii	Rroxscaffold_3G00242770
rosa_rugosa	Rorug07G0164100
rosa_samantha	Rh7AG304300 Rh7BG295900 Rh7CG322800 Rh7DG304400
rosa_wichuraiana	Rw7G025840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	238
AclWI	GGATC	2 cut(s)	236, 249
AgsI	TTSAA	1 cut(s)	201
AluBI	AGCT	2 cut(s)	185, 197
AluI	AGCT	2 cut(s)	185, 197
Alw26I	GTCTC	2 cut(s)	245, 283
AlwI	GGATC	2 cut(s)	236, 249
Aor13HI	TCCGGA	1 cut(s)	238
AoxI	GGCC	2 cut(s)	64, 87
ApeKI	GCWGC	2 cut(s)	173, 182
BamHI	GGATCC	1 cut(s)	241
BauI	CACGAG	1 cut(s)	91
BbvI	GCAGC	2 cut(s)	160, 194
BcoDI	GTCTC	2 cut(s)	245, 283
BfaI	CTAG	1 cut(s)	113
BisI	GCNGC	2 cut(s)	174, 183
BlsI	GCNGC	2 cut(s)	175, 184
BmiI	GGNNCC	2 cut(s)	109, 243
BpuEI	CTTGAG	1 cut(s)	134
BsaI	GGTCTC	1 cut(s)	283
BsaJI	CCNNGG	1 cut(s)	57
BsaWI	WCCGGW	1 cut(s)	238
Bse1I	ACTGG	1 cut(s)	259
BseAI	TCCGGA	1 cut(s)	238
BseDI	CCNNGG	1 cut(s)	57
BseNI	ACTGG	1 cut(s)	259
BseXI	GCAGC	2 cut(s)	160, 194
BshFI	GGCC	2 cut(s)	66, 89
BsiSI	CCGG	2 cut(s)	105, 239
BsmAI	GTCTC	2 cut(s)	245, 283
BsnI	GGCC	2 cut(s)	66, 89
Bso31I	GGTCTC	1 cut(s)	283
Bsp13I	TCCGGA	1 cut(s)	238
Bsp143I	GATC	1 cut(s)	241
Bsp19I	CCATGG	1 cut(s)	57
BspANI	GGCC	2 cut(s)	66, 89
BspEI	TCCGGA	1 cut(s)	238
BspLI	GGNNCC	2 cut(s)	109, 243
BspPI	GGATC	2 cut(s)	236, 249
BspTNI	GGTCTC	1 cut(s)	283
BsrI	ACTGG	1 cut(s)	259
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	1 cut(s)	241
BssSI	CACGAG	1 cut(s)	91
BssT1I	CCWWGG	1 cut(s)	57
Bst2BI	CACGAG	1 cut(s)	91
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	11
BstDSI	CCRYGG	1 cut(s)	57
BstKTI	GATC	1 cut(s)	244
BstMAI	GTCTC	2 cut(s)	245, 283
BstMBI	GATC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 182, 188
BstV1I	GCAGC	2 cut(s)	160, 194
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BsuRI	GGCC	2 cut(s)	66, 89
BtgI	CCRYGG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	30
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	7 cut(s)	66, 89, 116, 136, 173, 185, 197
CviKI_1	RGCY	7 cut(s)	66, 89, 116, 136, 173, 185, 197
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
Eam1104I	CTCTTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	11
Eco130I	CCWWGG	1 cut(s)	57
Eco147I	AGGCCT	1 cut(s)	66
Eco31I	GGTCTC	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	1 cut(s)	61
FaiI	YATR	6 cut(s)	59, 179, 216, 218, 265, 267
FatI	CATG	1 cut(s)	57
Fnu4HI	GCNGC	2 cut(s)	174, 183
Fsp4HI	GCNGC	2 cut(s)	174, 183
FspBI	CTAG	1 cut(s)	113
GluI	GCNGC	2 cut(s)	174, 183
HaeIII	GGCC	2 cut(s)	66, 89
HapII	CCGG	2 cut(s)	105, 239
Hin1II	CATG	1 cut(s)	61
HindIII	AAGCTT	1 cut(s)	195
HpaII	CCGG	2 cut(s)	105, 239
Hpy166II	GTNNAC	1 cut(s)	158
Hpy188III	TCNNGA	1 cut(s)	239
Hpy8I	GTNNAC	1 cut(s)	158
Hpy99I	CGWCG	1 cut(s)	104
HpyCH4III	ACNGT	1 cut(s)	25
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 182, 188
Hsp92II	CATG	1 cut(s)	61
Kpn2I	TCCGGA	1 cut(s)	238
Kzo9I	GATC	1 cut(s)	241
LpnPI	CCDG	6 cut(s)	112, 118, 149, 233, 240, 252
Lsp1109I	GCAGC	2 cut(s)	160, 194
MaeI	CTAG	1 cut(s)	113
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MboII	GAAGA	1 cut(s)	28
MfeI	CAATTG	1 cut(s)	10
MflI	RGATCY	1 cut(s)	241
MluCI	AATT	2 cut(s)	10, 52
MnlI	CCTC	7 cut(s)	12, 30, 56, 65, 100, 134, 148
MroI	TCCGGA	1 cut(s)	238
MspI	CCGG	2 cut(s)	105, 239
MunI	CAATTG	1 cut(s)	10
MwoI	GCNNNNNNNGC	3 cut(s)	179, 182, 188
NcoI	CCATGG	1 cut(s)	57
NdeII	GATC	1 cut(s)	241
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	2 cut(s)	109, 243
PceI	AGGCCT	1 cut(s)	66
PkrI	GCNGC	2 cut(s)	175, 184
PspN4I	GGNNCC	2 cut(s)	109, 243
PsuI	RGATCY	1 cut(s)	241
SatI	GCNGC	2 cut(s)	174, 183
Sau3AI	GATC	1 cut(s)	241
SetI	ASST	4 cut(s)	41, 76, 187, 199
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	2 cut(s)	10, 52
SseBI	AGGCCT	1 cut(s)	66
SspMI	CTAG	1 cut(s)	113
StuI	AGGCCT	1 cut(s)	66
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	1 cut(s)	25
TasI	AATT	2 cut(s)	10, 52
TscAI	CASTG	1 cut(s)	30
TseI	GCWGC	2 cut(s)	173, 182
TspDTI	ATGAA	1 cut(s)	34
TspGWI	ACGGA	1 cut(s)	241
TspRI	CASTG	1 cut(s)	30
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.