Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0009396

Physical Location & Seq

Genomic Coordinates Reverse (-)

368362 .. 369130

Gene Structure 769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1003100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGACGAGCACATGGAAGAGAAGATTGGGAAATGTGAGGTCCTTCGTATCGAATTCGACGGGAGGCCTGAGAGGAGGAAGCAACCTGGCGTCATGGGTGGTGGCTGGTACGCTAGCCTACTTCCTCTGGGTGAAGCCCTCACAGGACCTCAAGCGGGAACAGCAGGAAAGGGCTGCTCTGGCCTCTGCGGATCCCCATGCCTACGTAGAGAAGCGGAAACCGATCGCCGATCCTCAGGAGACTGGATTGATATACGGCAACAAGAATAAAGCTCGAAAACCGGATGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

97

Amino Acids

10.62

Weight (kDa)

10.22

Isoelectric Point (pI)

42.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33585 AT2G33585
fragaria_vesca	FvH4_5g26200 FvH4_5g26200 FvH4_5g26200 FvH4_5g26200
malus_domestica	MD06G1003100.v1.1
prunus_persica	Prupe.1G298300_v2.0.a1 Prupe.1G298300_v2.0.a1 Prupe.1G298300_v2.0.a1 Prupe.1G298300_v2.0.a1
pyrus_communis	pycom06g00320
rosa_chinensis	RchiOBHm_Chr7g0216881
rosa_multiflora	Rmu_co8325253.1_g000001 Rmu_sc0000854.1_g000015
rosa_roxburghii	Rroxscaffold_3G00242770
rosa_rugosa	Rorug07G0164100
rosa_samantha	Rh7AG304300 Rh7BG295900 Rh7CG322800 Rh7DG304400
rosa_wichuraiana	Rw7G025840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	154, 188, 214
AclWI	GGATC	3 cut(s)	185, 198, 224
AcsI	RAATTY	1 cut(s)	52
AcyI	GRCGYC	1 cut(s)	89
AfaI	GTAC	1 cut(s)	109
AfiI	CCNNNNNNNGG	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	84
AjuI	GAANNNNNNNTTGG	2 cut(s)	8, 40
AluBI	AGCT	1 cut(s)	272
AluI	AGCT	1 cut(s)	272
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	3 cut(s)	185, 198, 224
AoxI	GGCC	2 cut(s)	64, 180
ApeKI	GCWGC	1 cut(s)	173
ApoI	RAATTY	1 cut(s)	52
AspS9I	GGNCC	2 cut(s)	39, 145
AsuHPI	GGTGA	1 cut(s)	142
AsuNHI	GCTAGC	1 cut(s)	112
AvaII	GGWCC	2 cut(s)	39, 145
AxyI	CCTNAGG	1 cut(s)	234
BamHI	GGATCC	1 cut(s)	190
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	160
BceAI	ACGGC	1 cut(s)	271
BciT130I	CCWGG	1 cut(s)	86
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	1 cut(s)	113
BisI	GCNGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	175
Bme1390I	CCNGG	1 cut(s)	86
Bme18I	GGWCC	2 cut(s)	39, 145
BmgT120I	GGNCC	2 cut(s)	39, 145
BmiI	GGNNCC	1 cut(s)	192
BmrFI	CCNGG	1 cut(s)	86
BmsI	GCATC	1 cut(s)	274
BmtI	GCTAGC	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	134
BsaAI	YACGTR	1 cut(s)	205
BsaHI	GRCGYC	1 cut(s)	89
BsaWI	WCCGGW	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse1I	ACTGG	1 cut(s)	247
Bse21I	CCTNAGG	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	86
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMII	CTCAG	2 cut(s)	59, 248
BseNI	ACTGG	1 cut(s)	247
BseRI	GAGGAG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	160
Bsh1285I	CGRYCG	1 cut(s)	225
BshFI	GGCC	2 cut(s)	66, 182
BsiEI	CGRYCG	1 cut(s)	225
BsiHKAI	GWGCWC	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	233
BsnI	GGCC	2 cut(s)	66, 182
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	3 cut(s)	190, 222, 229
BspACI	CCGC	3 cut(s)	154, 188, 214
BspANI	GGCC	2 cut(s)	66, 182
BspCNI	CTCAG	2 cut(s)	60, 247
BspLI	GGNNCC	1 cut(s)	192
BspOI	GCTAGC	1 cut(s)	116
BspPI	GGATC	3 cut(s)	185, 198, 224
BsrI	ACTGG	1 cut(s)	247
BssMI	GATC	3 cut(s)	190, 222, 229
BssNI	GRCGYC	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	86
Bst6I	CTCTTC	1 cut(s)	11
BstACI	GRCGYC	1 cut(s)	89
BstBAI	YACGTR	1 cut(s)	205
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	2 cut(s)	68, 234
BstF5I	GGATG	1 cut(s)	289
BstKTI	GATC	3 cut(s)	193, 225, 232
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	3 cut(s)	190, 222, 229
BstMCI	CGRYCG	1 cut(s)	225
BstMWI	GCNNNNNNNGC	2 cut(s)	160, 179
BstNI	CCWGG	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	84
BstSNI	TACGTA	1 cut(s)	205
BstV1I	GCAGC	1 cut(s)	160
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
Bsu36I	CCTNAGG	1 cut(s)	234
BsuRI	GGCC	2 cut(s)	66, 182
BtsCI	GGATG	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	114
Cfr13I	GGNCC	2 cut(s)	39, 145
CseI	GACGC	1 cut(s)	78
Csp6I	GTAC	1 cut(s)	108
CviAII	CATG	3 cut(s)	12, 93, 197
CviJI	RGCY	7 cut(s)	66, 104, 116, 136, 173, 182, 272
CviKI_1	RGCY	7 cut(s)	66, 104, 116, 136, 173, 182, 272
CviQI	GTAC	1 cut(s)	108
DdeI	CTNAG	2 cut(s)	68, 234
DpnI	GATC	3 cut(s)	192, 224, 231
DpnII	GATC	3 cut(s)	190, 222, 229
Eam1104I	CTCTTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	11
Eco105I	TACGTA	1 cut(s)	205
Eco147I	AGGCCT	1 cut(s)	66
Eco47I	GGWCC	2 cut(s)	39, 145
Eco81I	CCTNAGG	1 cut(s)	234
EcoO109I	RGGNCCY	2 cut(s)	39, 145
EcoRI	GAATTC	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	84
FaeI	CATG	3 cut(s)	15, 96, 200
FaiI	YATR	4 cut(s)	13, 94, 198, 253
FatI	CATG	3 cut(s)	11, 92, 196
FauI	CCCGC	1 cut(s)	147
Fnu4HI	GCNGC	1 cut(s)	174
Fsp4HI	GCNGC	1 cut(s)	174
FspBI	CTAG	1 cut(s)	113
GluI	GCNGC	1 cut(s)	174
HaeIII	GGCC	2 cut(s)	66, 182
HapII	CCGG	1 cut(s)	281
HgaI	GACGC	1 cut(s)	78
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	3 cut(s)	15, 96, 200
HpaII	CCGG	1 cut(s)	281
HphI	GGTGA	1 cut(s)	142
Hpy188III	TCNNGA	1 cut(s)	236
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	1 cut(s)	52
HpyCH4IV	ACGT	1 cut(s)	204
HpyF10VI	GCNNNNNNNGC	2 cut(s)	160, 179
HpyF3I	CTNAG	2 cut(s)	68, 234
HpySE526I	ACGT	1 cut(s)	204
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	3 cut(s)	15, 96, 200
Kzo9I	GATC	3 cut(s)	190, 222, 229
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	1 cut(s)	113
MaeII	ACGT	1 cut(s)	204
MalI	GATC	3 cut(s)	192, 224, 231
MboI	GATC	3 cut(s)	190, 222, 229
MboII	GAAGA	2 cut(s)	28, 33
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	1 cut(s)	52
MnlI	CCTC	9 cut(s)	30, 56, 65, 68, 134, 148, 158, 193, 243
MspI	CCGG	1 cut(s)	281
MspR9I	CCNGG	1 cut(s)	86
MvaI	CCWGG	1 cut(s)	86
MwoI	GCNNNNNNNGC	2 cut(s)	160, 179
NdeII	GATC	3 cut(s)	190, 222, 229
NheI	GCTAGC	1 cut(s)	112
NlaIII	CATG	3 cut(s)	15, 96, 200
NlaIV	GGNNCC	1 cut(s)	192
PceI	AGGCCT	1 cut(s)	66
PkrI	GCNGC	1 cut(s)	175
Ple19I	CGATCG	1 cut(s)	225
Ppu21I	YACGTR	1 cut(s)	205
PpuMI	RGGWCCY	2 cut(s)	39, 145
Psp5II	RGGWCCY	2 cut(s)	39, 145
Psp6I	CCWGG	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	84
PspN4I	GGNNCC	1 cut(s)	192
PspPI	GGNCC	2 cut(s)	39, 145
PspPPI	RGGWCCY	2 cut(s)	39, 145
PsuI	RGATCY	1 cut(s)	190
PvuI	CGATCG	1 cut(s)	225
RsaI	GTAC	1 cut(s)	109
RsaNI	GTAC	1 cut(s)	108
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	3 cut(s)	190, 222, 229
Sau96I	GGNCC	2 cut(s)	39, 145
ScrFI	CCNGG	1 cut(s)	86
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	5 cut(s)	41, 87, 150, 207, 274
SfaNI	GCATC	1 cut(s)	274
SinI	GGWCC	2 cut(s)	39, 145
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
SnaBI	TACGTA	1 cut(s)	205
Sse9I	AATT	1 cut(s)	52
SseBI	AGGCCT	1 cut(s)	66
SsiI	CCGC	3 cut(s)	154, 188, 214
SspMI	CTAG	1 cut(s)	113
StuI	AGGCCT	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	84
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	3 cut(s)	50, 56, 274
TasI	AATT	1 cut(s)	52
TseI	GCWGC	1 cut(s)	173
VpaK11BI	GGWCC	2 cut(s)	39, 145
XapI	RAATTY	1 cut(s)	52
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.