Prupe.1G298300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0009396
Physical Location & Seq
Reverse (-)
29413838 .. 29416242
2405 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G298300.3

Sequence Viewer

Length: 291 bp
ATGACAACCACTTGGAGGAGAAGATTAGGAAATGTGAGGTCGTTTGTAGGGAATTCGATGGGAGGCCTAAGAGGAGGAAGCAACCTGGCCTCCTGGGTGGTGGCTGGGACCTTAGCCTACTTCCTTTGGGTTAAGCCCTCACAGGACCTCAAGCGAGAACAACAGGAAAGGGCTGCTTTGGCCTCTGCGGATCCACATGCCTATGTAGAGAAAAGGAAACCTGTTCCTGATCCTCAGGAGACTGGTTTGATATACGGAAATAAGAACAGAACTCGAAAACCGGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.8

Weight (kDa)

10.26

Isoelectric Point (pI)

52.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 188
AclWI GGATC 3 cut(s) 185, 198, 224
AcsI RAATTY 1 cut(s) 52
AfiI CCNNNNNNNGG 1 cut(s) 15
AjnI CCWGG 2 cut(s) 84, 92
Alw26I GTCTC 1 cut(s) 233
AlwI GGATC 3 cut(s) 185, 198, 224
AoxI GGCC 3 cut(s) 64, 87, 180
ApeKI GCWGC 1 cut(s) 173
ApoI RAATTY 1 cut(s) 52
AspS9I GGNCC 2 cut(s) 108, 145
AvaII GGWCC 2 cut(s) 108, 145
AxyI CCTNAGG 1 cut(s) 234
BamHI GGATCC 1 cut(s) 190
BbvI GCAGC 1 cut(s) 160
BccI CCATC 1 cut(s) 52
BciT130I CCWGG 2 cut(s) 86, 94
BcoDI GTCTC 1 cut(s) 233
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
Bme1390I CCNGG 2 cut(s) 86, 94
Bme18I GGWCC 2 cut(s) 108, 145
BmgT120I GGNCC 2 cut(s) 108, 145
BmiI GGNNCC 2 cut(s) 109, 192
BmrFI CCNGG 2 cut(s) 86, 94
Bpu10I CCTNAGC 1 cut(s) 112
BpuEI CTTGAG 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 93
BsaWI WCCGGW 1 cut(s) 280
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse1I ACTGG 1 cut(s) 247
Bse21I CCTNAGG 1 cut(s) 234
BseBI CCWGG 2 cut(s) 86, 94
BseDI CCNNGG 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 15
BseMII CTCAG 1 cut(s) 248
BseNI ACTGG 1 cut(s) 247
BseRI GAGGAG 2 cut(s) 31, 87
BseXI GCAGC 1 cut(s) 160
BseYI CCCAGC 1 cut(s) 104
BshFI GGCC 3 cut(s) 66, 89, 182
BsiSI CCGG 1 cut(s) 281
BslFI GGGAC 1 cut(s) 121
BslI CCNNNNNNNGG 1 cut(s) 15
BsmAI GTCTC 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 121
BsnI GGCC 3 cut(s) 66, 89, 182
Bsp143I GATC 2 cut(s) 190, 229
BspACI CCGC 1 cut(s) 188
BspANI GGCC 3 cut(s) 66, 89, 182
BspCNI CTCAG 1 cut(s) 247
BspLI GGNNCC 2 cut(s) 109, 192
BspPI GGATC 3 cut(s) 185, 198, 224
BsrI ACTGG 1 cut(s) 247
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 2 cut(s) 190, 229
Bst2UI CCWGG 2 cut(s) 86, 94
BstDEI CTNAG 3 cut(s) 68, 112, 234
BstKTI GATC 2 cut(s) 193, 232
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 2 cut(s) 190, 229
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNI CCWGG 2 cut(s) 86, 94
BstNSI RCATGY 1 cut(s) 200
BstSCI CCNGG 2 cut(s) 84, 92
BstV1I GCAGC 1 cut(s) 160
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
Bsu36I CCTNAGG 1 cut(s) 234
BsuRI GGCC 3 cut(s) 66, 89, 182
Cfr13I GGNCC 2 cut(s) 108, 145
CviAII CATG 1 cut(s) 197
CviJI RGCY 7 cut(s) 66, 89, 104, 116, 136, 173, 182
CviKI_1 RGCY 7 cut(s) 66, 89, 104, 116, 136, 173, 182
DdeI CTNAG 3 cut(s) 68, 112, 234
DpnI GATC 2 cut(s) 192, 231
DpnII GATC 2 cut(s) 190, 229
Eco147I AGGCCT 1 cut(s) 66
Eco47I GGWCC 2 cut(s) 108, 145
Eco81I CCTNAGG 1 cut(s) 234
EcoO109I RGGNCCY 2 cut(s) 108, 145
EcoRI GAATTC 1 cut(s) 52
EcoRII CCWGG 2 cut(s) 84, 92
FaeI CATG 1 cut(s) 200
FaiI YATR 3 cut(s) 198, 204, 253
FalI AAGNNNNNCTT 2 cut(s) 160, 192
FaqI GGGAC 1 cut(s) 121
FatI CATG 1 cut(s) 196
Fnu4HI GCNGC 1 cut(s) 174
Fsp4HI GCNGC 1 cut(s) 174
GluI GCNGC 1 cut(s) 174
GsaI CCCAGC 1 cut(s) 108
HaeIII GGCC 3 cut(s) 66, 89, 182
HapII CCGG 1 cut(s) 281
Hin1II CATG 1 cut(s) 200
HpaII CCGG 1 cut(s) 281
Hpy188III TCNNGA 2 cut(s) 227, 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 3 cut(s) 68, 112, 234
Hsp92II CATG 1 cut(s) 200
Kzo9I GATC 2 cut(s) 190, 229
Lsp1109I GCAGC 1 cut(s) 160
MalI GATC 2 cut(s) 192, 231
MboI GATC 2 cut(s) 190, 229
MboII GAAGA 1 cut(s) 33
MflI RGATCY 1 cut(s) 190
MluCI AATT 1 cut(s) 52
MseI TTAA 1 cut(s) 132
MslI CAYNNNNRTG 1 cut(s) 201
MspI CCGG 1 cut(s) 281
MspR9I CCNGG 2 cut(s) 86, 94
MvaI CCWGG 2 cut(s) 86, 94
MwoI GCNNNNNNNGC 1 cut(s) 179
NdeII GATC 2 cut(s) 190, 229
NlaIII CATG 1 cut(s) 200
NlaIV GGNNCC 2 cut(s) 109, 192
NspI RCATGY 1 cut(s) 200
PceI AGGCCT 1 cut(s) 66
PkrI GCNGC 1 cut(s) 175
PpuMI RGGWCCY 2 cut(s) 108, 145
Psp5II RGGWCCY 2 cut(s) 108, 145
Psp6I CCWGG 2 cut(s) 84, 92
PspFI CCCAGC 1 cut(s) 104
PspGI CCWGG 2 cut(s) 84, 92
PspN4I GGNNCC 2 cut(s) 109, 192
PspPI GGNCC 2 cut(s) 108, 145
PspPPI RGGWCCY 2 cut(s) 108, 145
PsuI RGATCY 1 cut(s) 190
RseI CAYNNNNRTG 1 cut(s) 201
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 1 cut(s) 174
Sau3AI GATC 2 cut(s) 190, 229
Sau96I GGNCC 2 cut(s) 108, 145
ScrFI CCNGG 2 cut(s) 86, 94
SetI ASST 5 cut(s) 41, 87, 113, 150, 223
SinI GGWCC 2 cut(s) 108, 145
SmiMI CAYNNNNRTG 1 cut(s) 201
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 1 cut(s) 52
SseBI AGGCCT 1 cut(s) 66
SsiI CCGC 1 cut(s) 188
StuI AGGCCT 1 cut(s) 66
StyD4I CCNGG 2 cut(s) 84, 92
TaqI TCGA 2 cut(s) 56, 274
TasI AATT 1 cut(s) 52
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TseI GCWGC 1 cut(s) 173
TspGWI ACGGA 1 cut(s) 270
VpaK11BI GGWCC 2 cut(s) 108, 145
XapI RAATTY 1 cut(s) 52
XceI RCATGY 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.