Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0014926

Physical Location & Seq

Genomic Coordinates Reverse (-)

17933284 .. 17936823

Gene Structure 3540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g26450.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCGGAGCACTTGGCTTCGATATTCGGGACGGAGAAGGACCGCGTGAACTGCCCCTTCTACTTCAAGATCGGCGCGTGCCGTCACGGCGACCGCTGCTCCCGTCTCCACAACCGCCCCACCATCAGCCCAACGCTCCTCCTCTCCAACATGTACCAACGCCCCGACATGATCACCCCCGGCGTCGACCCCCAGGGTCAGCCCCTCGACCCCCGCAAGATCCAGGACCACTTCGAAGACTTCTACGAGGACATCTTCGAGGAGCTCGACAAGTTCGGCGAGATCGAGAGCCTCAACGTCTGCGACAATCTCGCCGATCACATGATCGGCAACGTCTACGTCCAGTTCAAGGAGGAGGATCAAGCCGCGGCGGCGCTCCAGGCTTTACAGGGGAGATTCTACAACGGCCGCCCGATTATCGCGGACTTCTCGCCGGTCACGGATTTCCGCGAGGCCACGTGTCGCCAGTTCGAGGAGAACAGCTGTAACCGGGGAGGTTACTGTAATTTTATGCACGTGAAGCTGATTGGGAGGGAGTTGAGGAGGAAGCTTTACGGGAGGTACCGCGGGTTTAGGGCTAGCCGGAGCAGGAGCCGCAGCCGGAGTTTGAGCCCGCCGCGGCACCGGAGGGATAGGGACTACCGGGAGAGGGATTATAGAGGGAATGGGAAGAGAAGCAAGGATAGGTATGACAGGGACAGAGACAATGGGAGGAGGAGACATGGCAGTCCCGGGCGGAGCAGAACCAGGAGCAGGAGCCCTGTGGCGGCCGTGAGGGAAGGGAGCGAGGAGCGCCGTGCTAGAATTGAGCAGTGGAACCGAGAAAGGGAGGAGAAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0010467 GO:0016070 GO:0016071 GO:0022414 GO:0030628 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko05131 map03040 map05131

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

281

Amino Acids

33.03

Weight (kDa)

9.62

Isoelectric Point (pI)

70.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	14 - 38	1.2e-07	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
RRM_1	PF00076	83 - 139	1.5e-07	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42820 AT5G42820
fragaria_vesca	FvH4_5g26450 FvH4_5g26450
pyrus_communis	pycom06g00210
rosa_chinensis	RchiOBHm_Chr7g0217361
rosa_laevigata	RLG00000002486
rosa_multiflora	Rmu_sc0011824.1_g000010 Rmu_sc0038917.1_g000002
rosa_roxburghii	Rroxscaffold_3G00242300
rosa_rugosa	Rorug07G0168300 Rorug07G0168400
rosa_samantha	Rh7AG308100 Rh7BG298800 Rh7DG307200
rosa_wichuraiana	Rw7G026120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	726
Acc65I	GGTACC	1 cut(s)	561
AccB1I	GGYRCC	2 cut(s)	561, 621
AccI	GTMKAC	2 cut(s)	186, 336
AccII	CGCG	7 cut(s)	45, 77, 368, 422, 450, 567, 619
AclWI	GGATC	2 cut(s)	214, 366
AcoI	YGGCCR	2 cut(s)	406, 768
AcvI	CACGTG	2 cut(s)	459, 517
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	2 cut(s)	155, 563
AfiI	CCNNNNNNNGG	6 cut(s)	349, 472, 649, 753, 766, 826
AflIII	ACRYGT	2 cut(s)	150, 458
AgsI	TTSAA	2 cut(s)	67, 349
AjnI	CCWGG	4 cut(s)	192, 222, 378, 746
AluBI	AGCT	4 cut(s)	265, 483, 523, 550
AluI	AGCT	4 cut(s)	265, 483, 523, 550
Alw21I	GWGCWC	2 cut(s)	12, 267
Alw26I	GTCTC	3 cut(s)	110, 696, 712
AlwI	GGATC	2 cut(s)	214, 366
Ama87I	CYCGRG	1 cut(s)	731
AoxI	GGCC	3 cut(s)	406, 453, 768
ApeKI	GCWGC	2 cut(s)	96, 597
Asp718I	GGTACC	1 cut(s)	561
AspLEI	GCGC	3 cut(s)	77, 376, 795
AspS9I	GGNCC	2 cut(s)	40, 226
AsuC2I	CCSGG	5 cut(s)	180, 491, 644, 732, 733
AsuHPI	GGTGA	1 cut(s)	166
AsuII	TTCGAA	1 cut(s)	234
AsuNHI	GCTAGC	1 cut(s)	578
AvaI	CYCGRG	1 cut(s)	731
AvaII	GGWCC	2 cut(s)	40, 226
BanI	GGYRCC	2 cut(s)	561, 621
BanII	GRGCYC	3 cut(s)	267, 614, 761
BbrPI	CACGTG	2 cut(s)	459, 517
BbsI	GAAGAC	1 cut(s)	243
Bbv12I	GWGCWC	2 cut(s)	12, 267
BbvI	GCAGC	2 cut(s)	83, 609
BccI	CCATC	1 cut(s)	131
BceAI	ACGGC	5 cut(s)	66, 103, 421, 755, 780
BciT130I	CCWGG	4 cut(s)	194, 224, 380, 748
BclI	TGATCA	1 cut(s)	171
BcnI	CCSGG	5 cut(s)	180, 491, 644, 732, 733
BcoDI	GTCTC	3 cut(s)	110, 696, 712
BfaI	CTAG	2 cut(s)	579, 801
BfoI	RGCGCY	2 cut(s)	377, 796
BglI	GCCNNNNNGGC	2 cut(s)	87, 371
Bme1390I	CCNGG	9 cut(s)	180, 194, 224, 380, 491, 644, 732, 733, 748
Bme18I	GGWCC	2 cut(s)	40, 226
BmeT110I	CYCGRG	1 cut(s)	731
BmgT120I	GGNCC	2 cut(s)	40, 226
BmiI	GGNNCC	5 cut(s)	563, 593, 623, 758, 818
BmrFI	CCNGG	9 cut(s)	180, 194, 224, 380, 491, 644, 732, 733, 748
BmtI	GCTAGC	1 cut(s)	582
BpiI	GAAGAC	1 cut(s)	243
BpmI	CTGGAG	1 cut(s)	362
Bpu14I	TTCGAA	1 cut(s)	234
BpuMI	CCSGG	5 cut(s)	180, 491, 644, 732, 733
BsaAI	YACGTR	2 cut(s)	459, 517
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	8 cut(s)	178, 192, 193, 366, 490, 565, 617, 731
BsaWI	WCCGGW	1 cut(s)	624
BsaXI	ACNNNNNCTCC	3 cut(s)	83, 113, 824
Bsc4I	CCNNNNNNNGG	6 cut(s)	349, 472, 649, 753, 766, 826
Bse118I	RCCGGY	1 cut(s)	433
Bse1I	ACTGG	2 cut(s)	343, 466
BseBI	CCWGG	4 cut(s)	194, 224, 380, 748
BseDI	CCNNGG	8 cut(s)	178, 192, 193, 366, 490, 565, 617, 731
BseLI	CCNNNNNNNGG	6 cut(s)	349, 472, 649, 753, 766, 826
BseNI	ACTGG	2 cut(s)	343, 466
BseRI	GAGGAG	9 cut(s)	128, 131, 275, 368, 488, 556, 727, 730, 803
BseX3I	CGGCCG	2 cut(s)	406, 768
BseXI	GCAGC	2 cut(s)	83, 609
Bsh1236I	CGCG	7 cut(s)	45, 77, 368, 422, 450, 567, 619
Bsh1285I	CGRYCG	3 cut(s)	94, 409, 771
BshFI	GGCC	3 cut(s)	408, 455, 770
BshNI	GGYRCC	2 cut(s)	561, 621
BsiEI	CGRYCG	3 cut(s)	94, 409, 771
BsiHKAI	GWGCWC	2 cut(s)	12, 267
BsiHKCI	CYCGRG	1 cut(s)	731
BsiSI	CCGG	8 cut(s)	180, 434, 490, 583, 601, 625, 643, 732
BslFI	GGGAC	4 cut(s)	43, 650, 710, 714
BslI	CCNNNNNNNGG	6 cut(s)	349, 472, 649, 753, 766, 826
BsmAI	GTCTC	3 cut(s)	110, 696, 712
BsmBI	CGTCTC	1 cut(s)	110
BsmFI	GGGAC	4 cut(s)	43, 650, 710, 714
BsnI	GGCC	3 cut(s)	408, 455, 770
BsoBI	CYCGRG	1 cut(s)	731
Bsp119I	TTCGAA	1 cut(s)	234
Bsp1286I	GDGCHC	4 cut(s)	12, 267, 614, 761
Bsp143I	GATC	7 cut(s)	69, 171, 219, 282, 316, 324, 358
BspANI	GGCC	3 cut(s)	408, 455, 770
BspFNI	CGCG	7 cut(s)	45, 77, 368, 422, 450, 567, 619
BspLI	GGNNCC	5 cut(s)	563, 593, 623, 758, 818
BspOI	GCTAGC	1 cut(s)	582
BspPI	GGATC	2 cut(s)	214, 366
BspT104I	TTCGAA	1 cut(s)	234
BspT107I	GGYRCC	2 cut(s)	561, 621
BsrFI	RCCGGY	1 cut(s)	433
BsrI	ACTGG	2 cut(s)	343, 466
BssAI	RCCGGY	1 cut(s)	433
BssECI	CCNNGG	8 cut(s)	178, 192, 193, 366, 490, 565, 617, 731
BssMI	GATC	7 cut(s)	69, 171, 219, 282, 316, 324, 358
BssNI	GRCGYC	1 cut(s)	183
Bst2UI	CCWGG	4 cut(s)	194, 224, 380, 748
Bst4CI	ACNGT	1 cut(s)	503
Bst6I	CTCTTC	1 cut(s)	665
BstACI	GRCGYC	1 cut(s)	183
BstBAI	YACGTR	2 cut(s)	459, 517
BstBI	TTCGAA	1 cut(s)	234
BstC8I	GCNNGC	3 cut(s)	79, 580, 614
BstDSI	CCRYGG	3 cut(s)	366, 565, 617
BstFNI	CGCG	7 cut(s)	45, 77, 368, 422, 450, 567, 619
BstH2I	RGCGCY	2 cut(s)	377, 796
BstHHI	GCGC	3 cut(s)	77, 376, 795
BstKTI	GATC	7 cut(s)	72, 174, 222, 285, 319, 327, 361
BstMAI	GTCTC	3 cut(s)	110, 696, 712
BstMBI	GATC	7 cut(s)	69, 171, 219, 282, 316, 324, 358
BstMCI	CGRYCG	3 cut(s)	94, 409, 771
BstMWI	GCNNNNNNNGC	8 cut(s)	51, 87, 96, 371, 380, 520, 594, 792
BstNI	CCWGG	4 cut(s)	194, 224, 380, 748
BstNSI	RCATGY	1 cut(s)	154
BstSCI	CCNGG	9 cut(s)	178, 192, 222, 378, 489, 642, 730, 731, 746
BstUI	CGCG	7 cut(s)	45, 77, 368, 422, 450, 567, 619
BstV1I	GCAGC	2 cut(s)	83, 609
BstV2I	GAAGAC	1 cut(s)	243
BstX2I	RGATCY	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	219
BstZI	CGGCCG	2 cut(s)	406, 768
BsuRI	GGCC	3 cut(s)	408, 455, 770
BtgI	CCRYGG	3 cut(s)	366, 565, 617
BtsI	GCAGTG	1 cut(s)	818
BtsIMutI	CAGTG	1 cut(s)	818
Cac8I	GCNNGC	3 cut(s)	79, 580, 614
CfoI	GCGC	3 cut(s)	77, 376, 795
Cfr10I	RCCGGY	1 cut(s)	433
Cfr13I	GGNCC	2 cut(s)	40, 226
Cfr42I	CCGCGG	3 cut(s)	369, 568, 620
Cfr9I	CCCGGG	1 cut(s)	731
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	154, 562
CviAII	CATG	4 cut(s)	151, 169, 322, 722
CviQI	GTAC	2 cut(s)	154, 562
DpnI	GATC	7 cut(s)	71, 173, 221, 284, 318, 326, 360
DpnII	GATC	7 cut(s)	69, 171, 219, 282, 316, 324, 358
DrdI	GACNNNNNNGTC	1 cut(s)	726
DseDI	GACNNNNNNGTC	1 cut(s)	726
EaeI	YGGCCR	2 cut(s)	406, 768
EagI	CGGCCG	2 cut(s)	406, 768
Eam1104I	CTCTTC	1 cut(s)	665
EarI	CTCTTC	1 cut(s)	665
EciI	GGCGGA	2 cut(s)	20, 751
Ecl136II	GAGCTC	1 cut(s)	265
EclXI	CGGCCG	2 cut(s)	406, 768
Eco24I	GRGCYC	3 cut(s)	267, 614, 761
Eco47I	GGWCC	2 cut(s)	40, 226
Eco52I	CGGCCG	2 cut(s)	406, 768
Eco53kI	GAGCTC	1 cut(s)	265
Eco72I	CACGTG	2 cut(s)	459, 517
Eco88I	CYCGRG	1 cut(s)	731
EcoICRI	GAGCTC	1 cut(s)	265
EcoRII	CCWGG	4 cut(s)	192, 222, 378, 746
EcoT38I	GRGCYC	3 cut(s)	267, 614, 761
Esp3I	CGTCTC	1 cut(s)	110
FaeI	CATG	4 cut(s)	154, 172, 325, 725
FaiI	YATR	7 cut(s)	152, 170, 323, 512, 657, 690, 723
FaqI	GGGAC	4 cut(s)	43, 650, 710, 714
FatI	CATG	4 cut(s)	150, 168, 321, 721
FauI	CCCGC	3 cut(s)	221, 560, 621
FbaI	TGATCA	1 cut(s)	171
FblI	GTMKAC	2 cut(s)	186, 336
FriOI	GRGCYC	3 cut(s)	267, 614, 761
FspBI	CTAG	2 cut(s)	579, 801
GlaI	GCGC	3 cut(s)	76, 375, 794
GsuI	CTGGAG	1 cut(s)	362
HaeII	RGCGCY	2 cut(s)	377, 796
HaeIII	GGCC	3 cut(s)	408, 455, 770
HapII	CCGG	8 cut(s)	180, 434, 490, 583, 601, 625, 643, 732
HgaI	GACGC	1 cut(s)	172
HhaI	GCGC	3 cut(s)	77, 376, 795
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	4 cut(s)	154, 172, 325, 725
Hin6I	GCGC	3 cut(s)	75, 374, 793
HinP1I	GCGC	3 cut(s)	75, 374, 793
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HindIII	AAGCTT	1 cut(s)	548
HinfI	GANTC	1 cut(s)	396
HpaII	CCGG	8 cut(s)	180, 434, 490, 583, 601, 625, 643, 732
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	3 cut(s)	49, 187, 337
Hpy188III	TCNNGA	3 cut(s)	28, 67, 286
Hpy8I	GTNNAC	3 cut(s)	49, 187, 337
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	3 cut(s)	31, 67, 773
HpyCH4III	ACNGT	1 cut(s)	503
HpyCH4IV	ACGT	5 cut(s)	297, 333, 339, 458, 516
HpyCH4V	TGCA	1 cut(s)	514
HpyF10VI	GCNNNNNNNGC	8 cut(s)	51, 87, 96, 371, 380, 520, 594, 792
HpySE526I	ACGT	5 cut(s)	297, 333, 339, 458, 516
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	4 cut(s)	154, 172, 325, 725
HspAI	GCGC	3 cut(s)	75, 374, 793
KpnI	GGTACC	1 cut(s)	565
Ksp22I	TGATCA	1 cut(s)	171
KspI	CCGCGG	3 cut(s)	369, 568, 620
Kzo9I	GATC	7 cut(s)	69, 171, 219, 282, 316, 324, 358
Lsp1109I	GCAGC	2 cut(s)	83, 609
MaeI	CTAG	2 cut(s)	579, 801
MaeII	ACGT	5 cut(s)	297, 333, 339, 458, 516
MaeIII	GTNAC	4 cut(s)	83, 436, 485, 497
MalI	GATC	7 cut(s)	71, 173, 221, 284, 318, 326, 360
MboI	GATC	7 cut(s)	69, 171, 219, 282, 316, 324, 358
MboII	GAAGA	3 cut(s)	247, 248, 682
MflI	RGATCY	1 cut(s)	219
MhlI	GDGCHC	4 cut(s)	12, 267, 614, 761
MluCI	AATT	2 cut(s)	505, 804
MmeI	TCCRAC	1 cut(s)	171
MspA1I	CMGCKG	5 cut(s)	96, 368, 483, 567, 619
MspI	CCGG	8 cut(s)	180, 434, 490, 583, 601, 625, 643, 732
MspR9I	CCNGG	9 cut(s)	180, 194, 224, 380, 491, 644, 732, 733, 748
MvaI	CCWGG	4 cut(s)	194, 224, 380, 748
MvnI	CGCG	7 cut(s)	45, 77, 368, 422, 450, 567, 619
MwoI	GCNNNNNNNGC	8 cut(s)	51, 87, 96, 371, 380, 520, 594, 792
NciI	CCSGG	5 cut(s)	180, 491, 644, 732, 733
NdeII	GATC	7 cut(s)	69, 171, 219, 282, 316, 324, 358
NheI	GCTAGC	1 cut(s)	578
NlaIII	CATG	4 cut(s)	154, 172, 325, 725
NlaIV	GGNNCC	5 cut(s)	563, 593, 623, 758, 818
NmuCI	GTSAC	2 cut(s)	83, 436
NspI	RCATGY	1 cut(s)	154
NspV	TTCGAA	1 cut(s)	234
PasI	CCCWGGG	1 cut(s)	193
PciI	ACATGT	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	2 cut(s)	264, 282
PfeI	GAWTC	1 cut(s)	396
PfoI	TCCNGGA	1 cut(s)	222
PmaCI	CACGTG	2 cut(s)	459, 517
PmlI	CACGTG	2 cut(s)	459, 517
Ppu21I	YACGTR	2 cut(s)	459, 517
PscI	ACATGT	1 cut(s)	150
Psp124BI	GAGCTC	1 cut(s)	267
Psp6I	CCWGG	4 cut(s)	192, 222, 378, 746
PspCI	CACGTG	2 cut(s)	459, 517
PspGI	CCWGG	4 cut(s)	192, 222, 378, 746
PspN4I	GGNNCC	5 cut(s)	563, 593, 623, 758, 818
PspPI	GGNCC	2 cut(s)	40, 226
PsuI	RGATCY	1 cut(s)	219
PvuII	CAGCTG	1 cut(s)	483
RsaI	GTAC	2 cut(s)	155, 563
RsaNI	GTAC	2 cut(s)	154, 562
SacI	GAGCTC	1 cut(s)	267
SacII	CCGCGG	3 cut(s)	369, 568, 620
SalI	GTCGAC	1 cut(s)	185
Sau3AI	GATC	7 cut(s)	69, 171, 219, 282, 316, 324, 358
Sau96I	GGNCC	2 cut(s)	40, 226
ScrFI	CCNGG	9 cut(s)	180, 194, 224, 380, 491, 644, 732, 733, 748
SduI	GDGCHC	4 cut(s)	12, 267, 614, 761
Sfr303I	CCGCGG	3 cut(s)	369, 568, 620
SfuI	TTCGAA	1 cut(s)	234
SgrBI	CCGCGG	3 cut(s)	369, 568, 620
SinI	GGWCC	2 cut(s)	40, 226
SmaI	CCCGGG	1 cut(s)	733
Sse9I	AATT	2 cut(s)	505, 804
SspMI	CTAG	2 cut(s)	579, 801
SstI	GAGCTC	1 cut(s)	267
StyD4I	CCNGG	9 cut(s)	178, 192, 222, 378, 489, 642, 730, 731, 746
TaaI	ACNGT	1 cut(s)	503
TaiI	ACGT	5 cut(s)	300, 336, 342, 461, 519
TaqI	TCGA	8 cut(s)	20, 186, 207, 234, 258, 267, 285, 471
TasI	AATT	2 cut(s)	505, 804
TauI	GCSGC	8 cut(s)	368, 371, 374, 411, 597, 619, 622, 770
TfiI	GAWTC	1 cut(s)	396
TscAI	CASTG	1 cut(s)	818
TseFI	GTSAC	2 cut(s)	83, 436
TseI	GCWGC	2 cut(s)	96, 597
Tsp45I	GTSAC	2 cut(s)	83, 436
TspGWI	ACGGA	2 cut(s)	47, 455
TspMI	CCCGGG	1 cut(s)	731
TspRI	CASTG	1 cut(s)	818
VpaK11BI	GGWCC	2 cut(s)	40, 226
XceI	RCATGY	1 cut(s)	154
XmaI	CCCGGG	1 cut(s)	731
XmiI	GTMKAC	2 cut(s)	186, 336
XspI	CTAG	2 cut(s)	579, 801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.