pycom06g00210

Splicing factor U2af small subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
218594 .. 219607
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g00210.1

Sequence Viewer

Length: 1014 bp
ATGATCAGATCAGATGCCGAAATCGTAAGCGGCTGTGAAGCGAACAGTACACAAGGGTCCGAAGCGTCGAATCGAAGCTTCCGGAATTCAATCATCCATTTGGCAGTTAGGGCCCGTCGACATCTGTTACCTGGAACCCCTTTACCATTTACAATGGCGGAGCACTTGGCTTCCATCTTCGGCACAGAGAAGGACCGCGTCAACTGCCCCTTCTATTTCAAGATCGGCGCTTGCCGCCACGGTGACCGCTGCTCTCGCCTGCACAACCGCCCGACCATCAGTCCCACGCTGCTGCTGTCCAACATGTACCAGCGGCCCGACATGATCACCCCCGGCGTCGACTCCCAGGGCCAGCCCCTCGACCCGCGCAAGATCCAAGAGCATTTCGAGGACTTCTACGAGGACATCTTCGAGGAGCTCACCAAGTTCGGCGAGATCGAGAGCCTCAACGTCTGCGACAACCTCGCCGATCACATGATCGGCAACGTATATGTCCAGTTCAAGGAGGAGGATGAGGCCGCCGCCGCTCTTCAGGCGCTGCAGGGCCGCTTCTACAATGGTCGCCCCATAATCGCCGACTTCTCGCCGGTGACCGACTTTCGCGAAGCCACGTGCCGCCAGTTCGAGGAGAACAGCTGCAACCGAGGGGGATATTGTAATTTCATGCACGTCAAGCTGATTGGGAGGGAGCTCAGGAGGAGGCTCTTCGGGAGATACCGGGGCTACAGAATAAGCCGGAGCCGGAGCCGGAGTTTGAGCCCAAGGCATCGGAGCAGGGACTACGATAAGTACGATAAGAGAGAGAGGGACTATCGGGACCGTGATTATCGCGGGAATGGGCGACGGAGCAAGGACAGGTACGACAGGGACCGTGACAGAGACGGTGGTAGGAGAAGACACGGCAGCAGTCCGAGGCGGAGCAGGAGCAGGAGCCCCGTGGCGGTGAGGGAAGGCAGCGAGGAACGGCGAGCGAGGATTGAGCAGTGGAATCGAGAAAGGGAGGAGAAGCAGTGA

Protein Analysis

338

Amino Acids

39.57

Weight (kDa)

9.59

Isoelectric Point (pI)

73.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 65 - 89 1.5e-07 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
RRM_1 PF00076 134 - 190 1.4e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014926)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 527
AccI GTMKAC 2 cut(s) 118, 339
AccII CGCG 4 cut(s) 198, 367, 603, 831
AccIII TCCGGA 1 cut(s) 81
AclWI GGATC 1 cut(s) 367
AcsI RAATTY 1 cut(s) 85
AcuI CTGAAG 1 cut(s) 515
AcvI CACGTG 1 cut(s) 612
AcyI GRCGYC 1 cut(s) 336
AfaI GTAC 4 cut(s) 49, 308, 791, 860
AfiI CCNNNNNNNGG 3 cut(s) 502, 625, 940
AflIII ACRYGT 1 cut(s) 303
AgsI TTSAA 3 cut(s) 90, 220, 502
AhdI GACNNNNNGTC 1 cut(s) 279
AjiI CACGTC 1 cut(s) 670
AjnI CCWGG 2 cut(s) 130, 345
AluBI AGCT 5 cut(s) 78, 418, 636, 676, 691
AluI AGCT 5 cut(s) 78, 418, 636, 676, 691
Alw21I GWGCWC 3 cut(s) 165, 420, 693
Alw26I GTCTC 1 cut(s) 873
AlwI GGATC 1 cut(s) 367
AlwNI CAGNNNCTG 1 cut(s) 538
Aor13HI TCCGGA 1 cut(s) 81
AoxI GGCC 5 cut(s) 111, 314, 349, 516, 544
ApaI GGGCCC 1 cut(s) 115
ApeKI GCWGC 7 cut(s) 249, 289, 292, 538, 636, 903, 954
ApoI RAATTY 1 cut(s) 85
AspLEI GCGC 3 cut(s) 230, 369, 538
AspS9I GGNCC 9 cut(s) 57, 111, 112, 193, 315, 349, 544, 817, 868
AsuC2I CCSGG 2 cut(s) 333, 719
AsuHPI GGTGA 5 cut(s) 254, 319, 412, 601, 955
AvaII GGWCC 4 cut(s) 57, 193, 817, 868
BaeGI GKGCMC 1 cut(s) 115
BanII GRGCYC 5 cut(s) 115, 420, 693, 761, 935
BbrPI CACGTG 1 cut(s) 612
BbsI GAAGAC 1 cut(s) 901
Bbv12I GWGCWC 3 cut(s) 165, 420, 693
BbvI GCAGC 7 cut(s) 236, 276, 279, 525, 623, 915, 966
BccI CCATC 2 cut(s) 182, 284
BceAI ACGGC 2 cut(s) 916, 980
BcgI CGANNNNNNTGC 2 cut(s) 971, 1005
BciT130I CCWGG 2 cut(s) 132, 347
BclI TGATCA 2 cut(s) 3, 324
BcnI CCSGG 2 cut(s) 333, 719
BcoDI GTCTC 1 cut(s) 873
BfmI CTRYAG 2 cut(s) 539, 724
BfoI RGCGCY 2 cut(s) 231, 539
Bme1390I CCNGG 4 cut(s) 132, 333, 347, 719
Bme18I GGWCC 4 cut(s) 57, 193, 817, 868
BmeRI GACNNNNNGTC 1 cut(s) 279
BmgBI CACGTC 1 cut(s) 670
BmgT120I GGNCC 9 cut(s) 57, 111, 112, 193, 315, 349, 544, 817, 868
BmiI GGNNCC 8 cut(s) 58, 113, 136, 740, 746, 818, 869, 932
BmrFI CCNGG 4 cut(s) 132, 333, 347, 719
BmsI GCATC 2 cut(s) 4, 775
BpiI GAAGAC 1 cut(s) 901
Bpu10I CCTNAGC 1 cut(s) 692
BpuMI CCSGG 2 cut(s) 333, 719
BsaAI YACGTR 1 cut(s) 612
BsaHI GRCGYC 1 cut(s) 336
BsaJI CCNNGG 9 cut(s) 238, 331, 345, 346, 643, 718, 761, 911, 936
BsaWI WCCGGW 1 cut(s) 81
BsaXI ACNNNNNCTCC 3 cut(s) 736, 766, 995
Bsc4I CCNNNNNNNGG 3 cut(s) 502, 625, 940
Bse118I RCCGGY 1 cut(s) 586
Bse1I ACTGG 2 cut(s) 496, 619
BseAI TCCGGA 1 cut(s) 81
BseBI CCWGG 2 cut(s) 132, 347
BseDI CCNNGG 9 cut(s) 238, 331, 345, 346, 643, 718, 761, 911, 936
BseGI GGATG 2 cut(s) 93, 517
BseLI CCNNNNNNNGG 3 cut(s) 502, 625, 940
BseMII CTCAG 1 cut(s) 706
BseNI ACTGG 2 cut(s) 496, 619
BseRI GAGGAG 4 cut(s) 428, 521, 641, 712
BseSI GKGCMC 1 cut(s) 115
BseXI GCAGC 7 cut(s) 236, 276, 279, 525, 623, 915, 966
BsgI GTGCAG 1 cut(s) 245
Bsh1236I CGCG 4 cut(s) 198, 367, 603, 831
BshFI GGCC 5 cut(s) 113, 316, 351, 518, 546
BsiHKAI GWGCWC 3 cut(s) 165, 420, 693
BsiSI CCGG 7 cut(s) 82, 333, 587, 718, 736, 742, 748
BslFI GGGAC 5 cut(s) 267, 791, 821, 830, 881
BslI CCNNNNNNNGG 3 cut(s) 502, 625, 940
BsmAI GTCTC 1 cut(s) 873
BsmBI CGTCTC 1 cut(s) 873
BsmFI GGGAC 5 cut(s) 267, 791, 821, 830, 881
BsnI GGCC 5 cut(s) 113, 316, 351, 518, 546
Bsp120I GGGCCC 1 cut(s) 111
Bsp1286I GDGCHC 6 cut(s) 115, 165, 420, 693, 761, 935
Bsp13I TCCGGA 1 cut(s) 81
Bsp143I GATC 8 cut(s) 3, 8, 222, 324, 372, 435, 469, 477
Bsp68I TCGCGA 1 cut(s) 603
BspANI GGCC 5 cut(s) 113, 316, 351, 518, 546
BspCNI CTCAG 1 cut(s) 705
BspEI TCCGGA 1 cut(s) 81
BspFNI CGCG 4 cut(s) 198, 367, 603, 831
BspLI GGNNCC 8 cut(s) 58, 113, 136, 740, 746, 818, 869, 932
BspMAI CTGCAG 1 cut(s) 543
BspPI GGATC 1 cut(s) 367
BspQI GCTCTTC 2 cut(s) 534, 710
BsrBI CCGCTC 1 cut(s) 527
BsrFI RCCGGY 1 cut(s) 586
BsrI ACTGG 2 cut(s) 496, 619
BssAI RCCGGY 1 cut(s) 586
BssECI CCNNGG 9 cut(s) 238, 331, 345, 346, 643, 718, 761, 911, 936
BssMI GATC 8 cut(s) 3, 8, 222, 324, 372, 435, 469, 477
BssNI GRCGYC 1 cut(s) 336
BssT1I CCWWGG 1 cut(s) 761
Bst2UI CCWGG 2 cut(s) 132, 347
Bst4CI ACNGT 5 cut(s) 47, 242, 821, 872, 884
Bst6I CTCTTC 2 cut(s) 534, 710
BstACI GRCGYC 1 cut(s) 336
BstBAI YACGTR 1 cut(s) 612
BstC8I GCNNGC 4 cut(s) 232, 260, 353, 969
BstDEI CTNAG 1 cut(s) 692
BstDSI CCRYGG 2 cut(s) 238, 936
BstEII GGTNACC 2 cut(s) 242, 589
BstF5I GGATG 2 cut(s) 93, 517
BstFNI CGCG 4 cut(s) 198, 367, 603, 831
BstH2I RGCGCY 2 cut(s) 231, 539
BstHHI GCGC 3 cut(s) 230, 369, 538
BstKTI GATC 8 cut(s) 6, 11, 225, 327, 375, 438, 472, 480
BstMAI GTCTC 1 cut(s) 873
BstMBI GATC 8 cut(s) 3, 8, 222, 324, 372, 435, 469, 477
BstMWI GCNNNNNNNGC 7 cut(s) 110, 204, 234, 255, 524, 533, 673
BstNI CCWGG 2 cut(s) 132, 347
BstNSI RCATGY 1 cut(s) 307
BstPI GGTNACC 2 cut(s) 242, 589
BstSCI CCNGG 4 cut(s) 130, 331, 345, 717
BstSFI CTRYAG 2 cut(s) 539, 724
BstSLI GKGCMC 1 cut(s) 115
BstUI CGCG 4 cut(s) 198, 367, 603, 831
BstV1I GCAGC 7 cut(s) 236, 276, 279, 525, 623, 915, 966
BstV2I GAAGAC 1 cut(s) 901
BstX2I RGATCY 1 cut(s) 372
BstYI RGATCY 1 cut(s) 372
BsuRI GGCC 5 cut(s) 113, 316, 351, 518, 546
BtgI CCRYGG 2 cut(s) 238, 936
BtrI CACGTC 1 cut(s) 670
BtsCI GGATG 2 cut(s) 93, 517
BtsI GCAGTG 1 cut(s) 989
BtsIMutI CAGTG 1 cut(s) 989
BtuMI TCGCGA 1 cut(s) 603
Cac8I GCNNGC 4 cut(s) 232, 260, 353, 969
CaiI CAGNNNCTG 1 cut(s) 538
CfoI GCGC 3 cut(s) 230, 369, 538
Cfr10I RCCGGY 1 cut(s) 586
Cfr13I GGNCC 9 cut(s) 57, 111, 112, 193, 315, 349, 544, 817, 868
CseI GACGC 3 cut(s) 54, 187, 325
Csp6I GTAC 4 cut(s) 48, 307, 790, 859
CviAII CATG 4 cut(s) 304, 322, 475, 664
CviQI GTAC 4 cut(s) 48, 307, 790, 859
DdeI CTNAG 1 cut(s) 692
DpnI GATC 8 cut(s) 5, 10, 224, 326, 374, 437, 471, 479
DpnII GATC 8 cut(s) 3, 8, 222, 324, 372, 435, 469, 477
DriI GACNNNNNGTC 1 cut(s) 279
Eam1104I CTCTTC 2 cut(s) 534, 710
Eam1105I GACNNNNNGTC 1 cut(s) 279
EarI CTCTTC 2 cut(s) 534, 710
EciI GGCGGA 2 cut(s) 173, 931
Ecl136II GAGCTC 2 cut(s) 418, 691
Eco130I CCWWGG 1 cut(s) 761
Eco24I GRGCYC 5 cut(s) 115, 420, 693, 761, 935
Eco47I GGWCC 4 cut(s) 57, 193, 817, 868
Eco53kI GAGCTC 2 cut(s) 418, 691
Eco57I CTGAAG 1 cut(s) 515
Eco72I CACGTG 1 cut(s) 612
Eco91I GGTNACC 2 cut(s) 242, 589
EcoICRI GAGCTC 2 cut(s) 418, 691
EcoO109I RGGNCCY 1 cut(s) 111
EcoO65I GGTNACC 2 cut(s) 242, 589
EcoRI GAATTC 1 cut(s) 85
EcoRII CCWGG 2 cut(s) 130, 345
EcoT14I CCWWGG 1 cut(s) 761
EcoT38I GRGCYC 5 cut(s) 115, 420, 693, 761, 935
ErhI CCWWGG 1 cut(s) 761
Esp3I CGTCTC 1 cut(s) 873
FaeI CATG 4 cut(s) 307, 325, 478, 667
FaiI YATR 7 cut(s) 305, 323, 476, 490, 492, 569, 665
FaqI GGGAC 5 cut(s) 267, 791, 821, 830, 881
FatI CATG 4 cut(s) 303, 321, 474, 663
FauI CCCGC 2 cut(s) 372, 824
FbaI TGATCA 2 cut(s) 3, 324
FblI GTMKAC 2 cut(s) 118, 339
FokI GGATG 2 cut(s) 80, 524
FriOI GRGCYC 5 cut(s) 115, 420, 693, 761, 935
GlaI GCGC 3 cut(s) 229, 368, 537
HaeII RGCGCY 2 cut(s) 231, 539
HaeIII GGCC 5 cut(s) 113, 316, 351, 518, 546
HapII CCGG 7 cut(s) 82, 333, 587, 718, 736, 742, 748
HgaI GACGC 3 cut(s) 54, 187, 325
HhaI GCGC 3 cut(s) 230, 369, 538
Hin1I GRCGYC 1 cut(s) 336
Hin1II CATG 4 cut(s) 307, 325, 478, 667
Hin6I GCGC 3 cut(s) 228, 367, 536
HinP1I GCGC 3 cut(s) 228, 367, 536
HincII GTYRAC 3 cut(s) 119, 202, 340
HindII GTYRAC 3 cut(s) 119, 202, 340
HindIII AAGCTT 1 cut(s) 76
HinfI GANTC 3 cut(s) 70, 341, 988
HpaII CCGG 7 cut(s) 82, 333, 587, 718, 736, 742, 748
HphI GGTGA 5 cut(s) 254, 319, 412, 601, 955
Hpy166II GTNNAC 4 cut(s) 50, 119, 202, 340
Hpy188I TCNGA 5 cut(s) 8, 13, 61, 771, 912
Hpy188III TCNNGA 8 cut(s) 82, 220, 439, 602, 694, 709, 815, 992
Hpy8I GTNNAC 4 cut(s) 50, 119, 202, 340
Hpy99I CGWCG 4 cut(s) 70, 120, 341, 846
HpyAV CCTTC 3 cut(s) 184, 220, 944
HpyCH4III ACNGT 5 cut(s) 47, 242, 821, 872, 884
HpyCH4IV ACGT 4 cut(s) 450, 486, 611, 669
HpyCH4V TGCA 4 cut(s) 262, 541, 639, 667
HpyF10VI GCNNNNNNNGC 7 cut(s) 110, 204, 234, 255, 524, 533, 673
HpyF3I CTNAG 1 cut(s) 692
HpySE526I ACGT 4 cut(s) 450, 486, 611, 669
Hsp92I GRCGYC 1 cut(s) 336
Hsp92II CATG 4 cut(s) 307, 325, 478, 667
HspAI GCGC 3 cut(s) 228, 367, 536
Kpn2I TCCGGA 1 cut(s) 81
Ksp22I TGATCA 2 cut(s) 3, 324
Kzo9I GATC 8 cut(s) 3, 8, 222, 324, 372, 435, 469, 477
LguI GCTCTTC 2 cut(s) 534, 710
Lsp1109I GCAGC 7 cut(s) 236, 276, 279, 525, 623, 915, 966
LweI GCATC 2 cut(s) 4, 775
MaeII ACGT 4 cut(s) 450, 486, 611, 669
MaeIII GTNAC 4 cut(s) 126, 242, 589, 872
MalI GATC 8 cut(s) 5, 10, 224, 326, 374, 437, 471, 479
MbiI CCGCTC 1 cut(s) 527
MboI GATC 8 cut(s) 3, 8, 222, 324, 372, 435, 469, 477
MboII GAAGA 5 cut(s) 169, 400, 521, 697, 906
MflI RGATCY 1 cut(s) 372
MhlI GDGCHC 6 cut(s) 115, 165, 420, 693, 761, 935
MluCI AATT 2 cut(s) 85, 658
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 1 cut(s) 324
MroI TCCGGA 1 cut(s) 81
MspA1I CMGCKG 3 cut(s) 249, 313, 636
MspI CCGG 7 cut(s) 82, 333, 587, 718, 736, 742, 748
MspR9I CCNGG 4 cut(s) 132, 333, 347, 719
MvaI CCWGG 2 cut(s) 132, 347
MvnI CGCG 4 cut(s) 198, 367, 603, 831
MwoI GCNNNNNNNGC 7 cut(s) 110, 204, 234, 255, 524, 533, 673
NciI CCSGG 2 cut(s) 333, 719
NdeII GATC 8 cut(s) 3, 8, 222, 324, 372, 435, 469, 477
NlaIII CATG 4 cut(s) 307, 325, 478, 667
NlaIV GGNNCC 8 cut(s) 58, 113, 136, 740, 746, 818, 869, 932
NmuCI GTSAC 3 cut(s) 242, 589, 872
NruI TCGCGA 1 cut(s) 603
NspI RCATGY 1 cut(s) 307
PasI CCCWGGG 1 cut(s) 346
PciI ACATGT 1 cut(s) 303
PciSI GCTCTTC 2 cut(s) 534, 710
PcsI WCGNNNNNNNCGW 2 cut(s) 435, 789
PfeI GAWTC 2 cut(s) 70, 988
PflFI GACNNNGTC 1 cut(s) 197
PleI GAGTC 1 cut(s) 335
PmaCI CACGTG 1 cut(s) 612
PmlI CACGTG 1 cut(s) 612
PpsI GAGTC 1 cut(s) 335
Ppu21I YACGTR 1 cut(s) 612
PscI ACATGT 1 cut(s) 303
Psp124BI GAGCTC 2 cut(s) 420, 693
Psp6I CCWGG 2 cut(s) 130, 345
PspCI CACGTG 1 cut(s) 612
PspEI GGTNACC 2 cut(s) 242, 589
PspGI CCWGG 2 cut(s) 130, 345
PspN4I GGNNCC 8 cut(s) 58, 113, 136, 740, 746, 818, 869, 932
PspOMI GGGCCC 1 cut(s) 111
PspPI GGNCC 9 cut(s) 57, 111, 112, 193, 315, 349, 544, 817, 868
PstI CTGCAG 1 cut(s) 543
PstNI CAGNNNCTG 1 cut(s) 538
PsuI RGATCY 1 cut(s) 372
PsyI GACNNNGTC 1 cut(s) 197
PvuII CAGCTG 1 cut(s) 636
RruI TCGCGA 1 cut(s) 603
RsaI GTAC 4 cut(s) 49, 308, 791, 860
RsaNI GTAC 4 cut(s) 48, 307, 790, 859
SacI GAGCTC 2 cut(s) 420, 693
SalI GTCGAC 2 cut(s) 117, 338
SapI GCTCTTC 2 cut(s) 534, 710
Sau3AI GATC 8 cut(s) 3, 8, 222, 324, 372, 435, 469, 477
Sau96I GGNCC 9 cut(s) 57, 111, 112, 193, 315, 349, 544, 817, 868
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 4 cut(s) 132, 333, 347, 719
SduI GDGCHC 6 cut(s) 115, 165, 420, 693, 761, 935
SfaNI GCATC 2 cut(s) 4, 775
SfcI CTRYAG 2 cut(s) 539, 724
SgrAI CRCCGGYG 1 cut(s) 586
SinI GGWCC 4 cut(s) 57, 193, 817, 868
Sse9I AATT 2 cut(s) 85, 658
SstI GAGCTC 2 cut(s) 420, 693
StyD4I CCNGG 4 cut(s) 130, 331, 345, 717
StyI CCWWGG 1 cut(s) 761
TaaI ACNGT 5 cut(s) 47, 242, 821, 872, 884
TaiI ACGT 4 cut(s) 453, 489, 614, 672
TaqII GACCGA 1 cut(s) 608
TasI AATT 2 cut(s) 85, 658
TatI WGTACW 1 cut(s) 47
TauI GCSGC 8 cut(s) 33, 237, 316, 521, 524, 527, 549, 618
TfiI GAWTC 2 cut(s) 70, 988
TscAI CASTG 1 cut(s) 989
TseFI GTSAC 3 cut(s) 242, 589, 872
TseI GCWGC 7 cut(s) 249, 289, 292, 538, 636, 903, 954
Tsp45I GTSAC 3 cut(s) 242, 589, 872
TspDTI ATGAA 1 cut(s) 652
TspGWI ACGGA 1 cut(s) 859
TspRI CASTG 1 cut(s) 989
Tth111I GACNNNGTC 1 cut(s) 197
VpaK11BI GGWCC 4 cut(s) 57, 193, 817, 868
XapI RAATTY 1 cut(s) 85
XceI RCATGY 1 cut(s) 307
XmiI GTMKAC 2 cut(s) 118, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.