Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0014926

Physical Location & Seq

Genomic Coordinates Forward (+)

35084114 .. 35087072

Gene Structure 2959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002486

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCGGAGCACTTGGCTTCGATATTCGGAACCGAGAAGGACCGGGTGAACTGCCCGTTCTATTTCAAGATCGGCGCGTGCCGTCACGGCGACCGGTGCTCCCGTCTCCACAACCGGCCGACCATCAGCCCGACCCTGCTCCTCTCCAACATGTACCAGCGCCCCGACATGATCACCCCCGGCGTCGACCCCCAGGGCCAGCCCATCGACCCCCGCAAGATCCAGGACCATTTCGAGGACTTCTACGAGGACATCTTCGAGGAGCTCGACAAGTTCGGCGAGATCGAGAGCCTCAACGTCTGCGACAATCTCGCCGATCACATGATCGGCAACGTCTACGTCCAGTTCAAGGAGGAGGACCAGGCCGCCGCCGCCCTCCAGGCCTTGCAAGGGAGGTTCTATAACGGCCGCCCGATTATCGCCGACTTCTCGCCGGTGACGGATTTCCGGGAAGCCACGTGTCGCCAGTTCGAGGAGAACAACTGCAATCGAGGCGGCTACTGTAATTTTATGCACGTGAAGCTGATTGGGAGGGAATTGAGGAGGAAGCTGTATGGGAGGTACCGCGGGTATAGGGCTAGCCGGAGCCGGAGCCGGAGTTTGAGCCCGCGGCACCGGAGGGATAGGGATAGGGATTATGATAAACGGGACTACCGGGACAGAGATTATAGAGGGAATGGGAGGAGAAGCAAGGATAGTGGAATCGAGAAAGGGAGGGGAGGCTGTGATTGTGGCATTGGATTTCGTTGGGATTTGCTGTTATCTACACATCATAACGGCATCCATGATAATAGAATATCTGATGCTAAATCTATATTGGATACTCAGCACACTGGTGATATGGTGATAGGTATCCAGGGGACCTGGAAGTTAGTGCTTGACAGACTGATAGAGCGTTATTCGGTTTTTTTTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0010467 GO:0016070 GO:0016071 GO:0022414 GO:0030628 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko05131 map03040 map05131

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

306

Amino Acids

35.5

Weight (kDa)

8.52

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	14 - 38	1.3e-07	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
RRM_1	PF00076	83 - 139	1.7e-07	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42820 AT5G42820
fragaria_vesca	FvH4_5g26450 FvH4_5g26450
pyrus_communis	pycom06g00210
rosa_chinensis	RchiOBHm_Chr7g0217361
rosa_laevigata	RLG00000002486
rosa_multiflora	Rmu_sc0011824.1_g000010 Rmu_sc0038917.1_g000002
rosa_roxburghii	Rroxscaffold_3G00242300
rosa_rugosa	Rorug07G0168300 Rorug07G0168400
rosa_samantha	Rh7AG308100 Rh7BG298800 Rh7DG307200
rosa_wichuraiana	Rw7G026120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	561
AccB1I	GGYRCC	2 cut(s)	561, 612
AccI	GTMKAC	2 cut(s)	186, 336
AccII	CGCG	3 cut(s)	77, 567, 610
AclWI	GGATC	1 cut(s)	214
AcoI	YGGCCR	2 cut(s)	116, 406
AcvI	CACGTG	2 cut(s)	459, 517
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	2 cut(s)	155, 563
AfiI	CCNNNNNNNGG	4 cut(s)	235, 349, 390, 472
AflIII	ACRYGT	2 cut(s)	150, 458
AgeI	ACCGGT	1 cut(s)	93
AgsI	TTSAA	2 cut(s)	67, 349
AjnI	CCWGG	6 cut(s)	192, 222, 360, 378, 855, 863
AleI	CACNNNNGTG	1 cut(s)	834
AluBI	AGCT	3 cut(s)	265, 523, 550
AluI	AGCT	3 cut(s)	265, 523, 550
Alw21I	GWGCWC	3 cut(s)	12, 101, 267
Alw26I	GTCTC	1 cut(s)	110
AlwI	GGATC	1 cut(s)	214
AoxI	GGCC	5 cut(s)	116, 196, 363, 381, 406
AsiGI	ACCGGT	1 cut(s)	93
Asp718I	GGTACC	1 cut(s)	561
AspLEI	GCGC	2 cut(s)	77, 162
AspS9I	GGNCC	5 cut(s)	40, 196, 226, 358, 861
AsuC2I	CCSGG	4 cut(s)	44, 180, 449, 656
AsuHPI	GGTGA	5 cut(s)	58, 166, 448, 848, 856
AsuNHI	GCTAGC	1 cut(s)	578
AvaII	GGWCC	4 cut(s)	40, 226, 358, 861
BanI	GGYRCC	2 cut(s)	561, 612
BanII	GRGCYC	2 cut(s)	267, 608
BbrPI	CACGTG	2 cut(s)	459, 517
Bbv12I	GWGCWC	3 cut(s)	12, 101, 267
BccI	CCATC	2 cut(s)	131, 212
BceAI	ACGGC	4 cut(s)	66, 103, 421, 793
BciT130I	CCWGG	6 cut(s)	194, 224, 362, 380, 857, 865
BciVI	GTATCC	2 cut(s)	814, 863
BclI	TGATCA	1 cut(s)	171
BcnI	CCSGG	4 cut(s)	44, 180, 449, 656
BcoDI	GTCTC	1 cut(s)	110
BfaI	CTAG	1 cut(s)	579
BfoI	RGCGCY	1 cut(s)	163
BfuI	GTATCC	2 cut(s)	814, 863
BglI	GCCNNNNNGGC	2 cut(s)	87, 380
BisI	GCNGC	6 cut(s)	366, 369, 372, 409, 496, 611
BlsI	GCNGC	6 cut(s)	367, 370, 373, 410, 497, 612
Bme18I	GGWCC	4 cut(s)	40, 226, 358, 861
BmgT120I	GGNCC	5 cut(s)	40, 196, 226, 358, 861
BmiI	GGNNCC	6 cut(s)	31, 563, 587, 593, 614, 862
BmsI	GCATC	2 cut(s)	789, 793
BmtI	GCTAGC	1 cut(s)	582
BpmI	CTGGAG	1 cut(s)	362
BpuMI	CCSGG	4 cut(s)	44, 180, 449, 656
BsaAI	YACGTR	2 cut(s)	459, 517
BsaBI	GATNNNNATC	1 cut(s)	851
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	6 cut(s)	178, 192, 193, 565, 608, 856
BsaWI	WCCGGW	2 cut(s)	93, 615
BsaXI	ACNNNNNCTCC	4 cut(s)	83, 113, 583, 613
Bsc4I	CCNNNNNNNGG	4 cut(s)	235, 349, 390, 472
Bse118I	RCCGGY	3 cut(s)	93, 114, 433
Bse1I	ACTGG	3 cut(s)	343, 466, 838
Bse8I	GATNNNNATC	1 cut(s)	851
BseBI	CCWGG	6 cut(s)	194, 224, 362, 380, 857, 865
BseDI	CCNNGG	6 cut(s)	178, 192, 193, 565, 608, 856
BseGI	GGATG	1 cut(s)	780
BseJI	GATNNNNATC	1 cut(s)	851
BseLI	CCNNNNNNNGG	4 cut(s)	235, 349, 390, 472
BseMII	CTCAG	1 cut(s)	839
BseNI	ACTGG	3 cut(s)	343, 466, 838
BseRI	GAGGAG	6 cut(s)	131, 275, 368, 488, 556, 697
BseX3I	CGGCCG	2 cut(s)	116, 406
Bsh1236I	CGCG	3 cut(s)	77, 567, 610
Bsh1285I	CGRYCG	3 cut(s)	94, 119, 409
BshFI	GGCC	5 cut(s)	118, 198, 365, 383, 408
BshNI	GGYRCC	2 cut(s)	561, 612
BshTI	ACCGGT	1 cut(s)	93
BsiEI	CGRYCG	3 cut(s)	94, 119, 409
BsiHKAI	GWGCWC	3 cut(s)	12, 101, 267
BslFI	GGGAC	3 cut(s)	662, 671, 874
BslI	CCNNNNNNNGG	4 cut(s)	235, 349, 390, 472
BsmAI	GTCTC	1 cut(s)	110
BsmBI	CGTCTC	1 cut(s)	110
BsmFI	GGGAC	3 cut(s)	662, 671, 874
BsnI	GGCC	5 cut(s)	118, 198, 365, 383, 408
Bsp1286I	GDGCHC	4 cut(s)	12, 101, 267, 608
Bsp143I	GATC	6 cut(s)	69, 171, 219, 282, 316, 324
BspANI	GGCC	5 cut(s)	118, 198, 365, 383, 408
BspCNI	CTCAG	1 cut(s)	838
BspFNI	CGCG	3 cut(s)	77, 567, 610
BspLI	GGNNCC	6 cut(s)	31, 563, 587, 593, 614, 862
BspOI	GCTAGC	1 cut(s)	582
BspPI	GGATC	1 cut(s)	214
BspT107I	GGYRCC	2 cut(s)	561, 612
BsrFI	RCCGGY	3 cut(s)	93, 114, 433
BsrI	ACTGG	3 cut(s)	343, 466, 838
BssAI	RCCGGY	3 cut(s)	93, 114, 433
BssECI	CCNNGG	6 cut(s)	178, 192, 193, 565, 608, 856
BssMI	GATC	6 cut(s)	69, 171, 219, 282, 316, 324
BssNI	GRCGYC	1 cut(s)	183
Bst2UI	CCWGG	6 cut(s)	194, 224, 362, 380, 857, 865
Bst4CI	ACNGT	1 cut(s)	503
BstACI	GRCGYC	1 cut(s)	183
BstBAI	YACGTR	2 cut(s)	459, 517
BstC8I	GCNNGC	4 cut(s)	79, 200, 580, 608
BstDEI	CTNAG	1 cut(s)	825
BstDSI	CCRYGG	2 cut(s)	565, 608
BstF5I	GGATG	1 cut(s)	780
BstFNI	CGCG	3 cut(s)	77, 567, 610
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	2 cut(s)	77, 162
BstKTI	GATC	6 cut(s)	72, 174, 222, 285, 319, 327
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	6 cut(s)	69, 171, 219, 282, 316, 324
BstMCI	CGRYCG	3 cut(s)	94, 119, 409
BstMWI	GCNNNNNNNGC	6 cut(s)	87, 96, 371, 380, 492, 520
BstNI	CCWGG	6 cut(s)	194, 224, 362, 380, 857, 865
BstNSI	RCATGY	1 cut(s)	154
BstUI	CGCG	3 cut(s)	77, 567, 610
BstX2I	RGATCY	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	219
BstZI	CGGCCG	2 cut(s)	116, 406
BsuI	GTATCC	2 cut(s)	814, 863
BsuRI	GGCC	5 cut(s)	118, 198, 365, 383, 408
BtgI	CCRYGG	2 cut(s)	565, 608
BtsCI	GGATG	1 cut(s)	780
BtsIMutI	CAGTG	1 cut(s)	831
Cac8I	GCNNGC	4 cut(s)	79, 200, 580, 608
CfoI	GCGC	2 cut(s)	77, 162
Cfr10I	RCCGGY	3 cut(s)	93, 114, 433
Cfr13I	GGNCC	5 cut(s)	40, 196, 226, 358, 861
Cfr42I	CCGCGG	2 cut(s)	568, 611
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	154, 562
CspAI	ACCGGT	1 cut(s)	93
CspCI	CAANNNNNGTGG	2 cut(s)	679, 714
CviAII	CATG	4 cut(s)	151, 169, 322, 785
CviQI	GTAC	2 cut(s)	154, 562
DdeI	CTNAG	1 cut(s)	825
DpnI	GATC	6 cut(s)	71, 173, 221, 284, 318, 326
DpnII	GATC	6 cut(s)	69, 171, 219, 282, 316, 324
EaeI	YGGCCR	2 cut(s)	116, 406
EagI	CGGCCG	2 cut(s)	116, 406
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	265
EclXI	CGGCCG	2 cut(s)	116, 406
Eco147I	AGGCCT	1 cut(s)	383
Eco24I	GRGCYC	2 cut(s)	267, 608
Eco47I	GGWCC	4 cut(s)	40, 226, 358, 861
Eco52I	CGGCCG	2 cut(s)	116, 406
Eco53kI	GAGCTC	1 cut(s)	265
Eco72I	CACGTG	2 cut(s)	459, 517
EcoICRI	GAGCTC	1 cut(s)	265
EcoO109I	RGGNCCY	1 cut(s)	861
EcoRII	CCWGG	6 cut(s)	192, 222, 360, 378, 855, 863
EcoT38I	GRGCYC	2 cut(s)	267, 608
Esp3I	CGTCTC	1 cut(s)	110
FaeI	CATG	4 cut(s)	154, 172, 325, 788
FaqI	GGGAC	3 cut(s)	662, 671, 874
FatI	CATG	4 cut(s)	150, 168, 321, 784
FauI	CCCGC	3 cut(s)	221, 560, 615
FbaI	TGATCA	1 cut(s)	171
FblI	GTMKAC	2 cut(s)	186, 336
Fnu4HI	GCNGC	6 cut(s)	366, 369, 372, 409, 496, 611
FokI	GGATG	1 cut(s)	767
FriOI	GRGCYC	2 cut(s)	267, 608
Fsp4HI	GCNGC	6 cut(s)	366, 369, 372, 409, 496, 611
FspBI	CTAG	1 cut(s)	579
GlaI	GCGC	2 cut(s)	76, 161
GluI	GCNGC	6 cut(s)	366, 369, 372, 409, 496, 611
GsuI	CTGGAG	1 cut(s)	362
HaeII	RGCGCY	1 cut(s)	163
HaeIII	GGCC	5 cut(s)	118, 198, 365, 383, 408
HgaI	GACGC	1 cut(s)	172
HhaI	GCGC	2 cut(s)	77, 162
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	4 cut(s)	154, 172, 325, 788
Hin6I	GCGC	2 cut(s)	75, 160
HinP1I	GCGC	2 cut(s)	75, 160
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	1 cut(s)	702
HphI	GGTGA	5 cut(s)	58, 166, 448, 848, 856
Hpy166II	GTNNAC	3 cut(s)	49, 187, 337
Hpy188I	TCNGA	2 cut(s)	29, 802
Hpy188III	TCNNGA	4 cut(s)	67, 286, 706, 915
Hpy8I	GTNNAC	3 cut(s)	49, 187, 337
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	1 cut(s)	31
HpyCH4III	ACNGT	1 cut(s)	503
HpyCH4IV	ACGT	5 cut(s)	297, 333, 339, 458, 516
HpyCH4V	TGCA	3 cut(s)	388, 486, 514
HpyF10VI	GCNNNNNNNGC	6 cut(s)	87, 96, 371, 380, 492, 520
HpyF3I	CTNAG	1 cut(s)	825
HpySE526I	ACGT	5 cut(s)	297, 333, 339, 458, 516
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	4 cut(s)	154, 172, 325, 788
HspAI	GCGC	2 cut(s)	75, 160
KpnI	GGTACC	1 cut(s)	565
Ksp22I	TGATCA	1 cut(s)	171
KspI	CCGCGG	2 cut(s)	568, 611
Kzo9I	GATC	6 cut(s)	69, 171, 219, 282, 316, 324
LmnI	GCTCC	6 cut(s)	7, 104, 144, 262, 585, 591
LweI	GCATC	2 cut(s)	789, 793
MaeI	CTAG	1 cut(s)	579
MaeII	ACGT	5 cut(s)	297, 333, 339, 458, 516
MaeIII	GTNAC	2 cut(s)	83, 436
MalI	GATC	6 cut(s)	71, 173, 221, 284, 318, 326
MboI	GATC	6 cut(s)	69, 171, 219, 282, 316, 324
MboII	GAAGA	1 cut(s)	247
MflI	RGATCY	1 cut(s)	219
MhlI	GDGCHC	4 cut(s)	12, 101, 267, 608
MluCI	AATT	2 cut(s)	505, 536
MmeI	TCCRAC	1 cut(s)	171
MslI	CAYNNNNRTG	1 cut(s)	834
MspA1I	CMGCKG	2 cut(s)	567, 610
MvaI	CCWGG	6 cut(s)	194, 224, 362, 380, 857, 865
MvnI	CGCG	3 cut(s)	77, 567, 610
MwoI	GCNNNNNNNGC	6 cut(s)	87, 96, 371, 380, 492, 520
NciI	CCSGG	4 cut(s)	44, 180, 449, 656
NdeII	GATC	6 cut(s)	69, 171, 219, 282, 316, 324
NheI	GCTAGC	1 cut(s)	578
NlaIII	CATG	4 cut(s)	154, 172, 325, 788
NlaIV	GGNNCC	6 cut(s)	31, 563, 587, 593, 614, 862
NmuCI	GTSAC	2 cut(s)	83, 436
NspI	RCATGY	1 cut(s)	154
OliI	CACNNNNGTG	1 cut(s)	834
PasI	CCCWGGG	1 cut(s)	193
PceI	AGGCCT	1 cut(s)	383
PciI	ACATGT	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	2 cut(s)	264, 282
PfeI	GAWTC	1 cut(s)	702
PfoI	TCCNGGA	2 cut(s)	222, 447
PinAI	ACCGGT	1 cut(s)	93
PkrI	GCNGC	6 cut(s)	367, 370, 373, 410, 497, 612
PmaCI	CACGTG	2 cut(s)	459, 517
PmlI	CACGTG	2 cut(s)	459, 517
Ppu21I	YACGTR	2 cut(s)	459, 517
PpuMI	RGGWCCY	1 cut(s)	861
PscI	ACATGT	1 cut(s)	150
Psp124BI	GAGCTC	1 cut(s)	267
Psp5II	RGGWCCY	1 cut(s)	861
Psp6I	CCWGG	6 cut(s)	192, 222, 360, 378, 855, 863
PspCI	CACGTG	2 cut(s)	459, 517
PspGI	CCWGG	6 cut(s)	192, 222, 360, 378, 855, 863
PspN4I	GGNNCC	6 cut(s)	31, 563, 587, 593, 614, 862
PspPI	GGNCC	5 cut(s)	40, 196, 226, 358, 861
PspPPI	RGGWCCY	1 cut(s)	861
PsuI	RGATCY	1 cut(s)	219
RsaI	GTAC	2 cut(s)	155, 563
RsaNI	GTAC	2 cut(s)	154, 562
RseI	CAYNNNNRTG	1 cut(s)	834
SacI	GAGCTC	1 cut(s)	267
SacII	CCGCGG	2 cut(s)	568, 611
SalI	GTCGAC	1 cut(s)	185
SatI	GCNGC	6 cut(s)	366, 369, 372, 409, 496, 611
Sau3AI	GATC	6 cut(s)	69, 171, 219, 282, 316, 324
Sau96I	GGNCC	5 cut(s)	40, 196, 226, 358, 861
SduI	GDGCHC	4 cut(s)	12, 101, 267, 608
SfaNI	GCATC	2 cut(s)	789, 793
Sfr303I	CCGCGG	2 cut(s)	568, 611
SgrAI	CRCCGGYG	1 cut(s)	433
SgrBI	CCGCGG	2 cut(s)	568, 611
SinI	GGWCC	4 cut(s)	40, 226, 358, 861
SmiMI	CAYNNNNRTG	1 cut(s)	834
Sse9I	AATT	2 cut(s)	505, 536
SseBI	AGGCCT	1 cut(s)	383
SspMI	CTAG	1 cut(s)	579
SstI	GAGCTC	1 cut(s)	267
StuI	AGGCCT	1 cut(s)	383
TaaI	ACNGT	1 cut(s)	503
TaiI	ACGT	5 cut(s)	300, 336, 342, 461, 519
TasI	AATT	2 cut(s)	505, 536
TauI	GCSGC	6 cut(s)	368, 371, 374, 411, 498, 613
TfiI	GAWTC	1 cut(s)	702
TscAI	CASTG	1 cut(s)	838
TseFI	GTSAC	2 cut(s)	83, 436
Tsp45I	GTSAC	2 cut(s)	83, 436
TspGWI	ACGGA	1 cut(s)	455
TspRI	CASTG	1 cut(s)	838
VpaK11BI	GGWCC	4 cut(s)	40, 226, 358, 861
XceI	RCATGY	1 cut(s)	154
XmiI	GTMKAC	2 cut(s)	186, 336
XspI	CTAG	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.