Rmu_sc0038917.1_g000002

Splicing factor U2af small subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038917.1
Physical Location & Seq
Reverse (-)
7338 .. 9898
2561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038917.1_g000002.1.cds

Sequence Viewer

Length: 1005 bp
atgaatgctgagggtgccaaatcttcaaccttgcagcctagacagggtgaagagcaagagctaaagaaggaaacagagttgttgagacggcaaccattacgcaatttccctctaaatattaagagttggggctcactcgacgacgacgagagaagagtagcgatggcggagcacttggcttcgatattcgggaccgagaaggaccgggtgaactgcccgttctatttcaagatcggcgcgtgccgtcacggcgaccggtgctcccgtctccacaaccggccgacgatcagcccgaccctgctcctctccaacatgtaccagcgccccgacatgatcacccccggcgtcgacccccagggccagcccatcgacccccgcaagatccaggaccatttcgaggacttctacgaggacatcttcgaggagctcgacaagttcggcgagatcgagagcctcaacgtctgcgacaatctcgccgatcacatgatcggcaacgtctacgtccagttcaaggaggaggaccaggccgccgccgccctccaggccttgcaagggaggttctataacggccgcccgattatcgccgacttctcgcccgtgacggatttccgggaagccacgtgtcgccagttcgaggagaacaactgcaatcgaggcggctactgtaattttatgcacgtcaagctgattgggagggaattgaggaggaagctgtatgggaggtaccgcgggtatagggctagccggagccggagccggagtttgagcccgcggcaccggagggatagggatagggattatgataaacgggaccaccgggacagagattatagagggaatgggaggagaagcaaggataggtatgacagggacagagacggtgggaggagaagacatagcagtcccaggcggagcaggagccccgtggcggcagtgagggaagggagcgaagaacgccgagctaggattgagcagtggaatcgagaaagggaggggaagctgtga

Protein Analysis

334

Amino Acids

39.4

Weight (kDa)

9.45

Isoelectric Point (pI)

69.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014926)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 900
Acc65I GGTACC 1 cut(s) 723
AccB1I GGYRCC 3 cut(s) 14, 723, 774
AccI GTMKAC 2 cut(s) 348, 498
AccII CGCG 3 cut(s) 239, 729, 772
AclWI GGATC 1 cut(s) 376
AcoI YGGCCR 2 cut(s) 278, 568
AcvI CACGTG 1 cut(s) 621
AcyI GRCGYC 1 cut(s) 345
AfaI GTAC 2 cut(s) 317, 725
AfiI CCNNNNNNNGG 6 cut(s) 44, 397, 511, 552, 634, 928
AflIII ACRYGT 2 cut(s) 312, 620
AgeI ACCGGT 1 cut(s) 255
AgsI TTSAA 3 cut(s) 27, 229, 511
AjiI CACGTC 1 cut(s) 679
AjnI CCWGG 5 cut(s) 354, 384, 522, 540, 905
AluBI AGCT 6 cut(s) 61, 427, 685, 712, 962, 1000
AluI AGCT 6 cut(s) 61, 427, 685, 712, 962, 1000
Alw21I GWGCWC 3 cut(s) 174, 263, 429
Alw26I GTCTC 3 cut(s) 79, 272, 870
AlwI GGATC 1 cut(s) 376
AoxI GGCC 5 cut(s) 278, 358, 525, 543, 568
ApeKI GCWGC 1 cut(s) 34
AsiGI ACCGGT 1 cut(s) 255
Asp718I GGTACC 1 cut(s) 723
AspLEI GCGC 2 cut(s) 239, 324
AspS9I GGNCC 6 cut(s) 192, 202, 358, 388, 520, 811
AsuC2I CCSGG 4 cut(s) 206, 342, 611, 818
AsuHPI GGTGA 3 cut(s) 59, 220, 328
AsuNHI GCTAGC 1 cut(s) 740
AvaII GGWCC 5 cut(s) 192, 202, 388, 520, 811
BanI GGYRCC 3 cut(s) 14, 723, 774
BanII GRGCYC 4 cut(s) 134, 429, 770, 923
BbrPI CACGTG 1 cut(s) 621
BbsI GAAGAC 1 cut(s) 898
Bbv12I GWGCWC 3 cut(s) 174, 263, 429
BbvCI CCTCAGC 1 cut(s) 9
BbvI GCAGC 1 cut(s) 46
BccI CCATC 2 cut(s) 157, 374
BceAI ACGGC 4 cut(s) 104, 228, 265, 583
BcgI CGANNNNNNTGC 2 cut(s) 962, 996
BciT130I CCWGG 5 cut(s) 356, 386, 524, 542, 907
BclI TGATCA 1 cut(s) 333
BcnI CCSGG 4 cut(s) 206, 342, 611, 818
BcoDI GTCTC 3 cut(s) 79, 272, 870
BfaI CTAG 3 cut(s) 39, 741, 963
BfoI RGCGCY 1 cut(s) 325
BglI GCCNNNNNGGC 2 cut(s) 249, 542
BisI GCNGC 8 cut(s) 35, 528, 531, 534, 571, 658, 773, 930
BlsI GCNGC 8 cut(s) 36, 529, 532, 535, 572, 659, 774, 931
Bme1390I CCNGG 9 cut(s) 206, 342, 356, 386, 524, 542, 611, 818, 907
Bme18I GGWCC 5 cut(s) 192, 202, 388, 520, 811
BmgBI CACGTC 1 cut(s) 679
BmgT120I GGNCC 6 cut(s) 192, 202, 358, 388, 520, 811
BmiI GGNNCC 8 cut(s) 16, 193, 725, 749, 755, 776, 812, 920
BmrFI CCNGG 9 cut(s) 206, 342, 356, 386, 524, 542, 611, 818, 907
BmtI GCTAGC 1 cut(s) 744
BpiI GAAGAC 1 cut(s) 898
BpmI CTGGAG 1 cut(s) 524
Bpu10I CCTNAGC 1 cut(s) 9
BpuMI CCSGG 4 cut(s) 206, 342, 611, 818
BsaAI YACGTR 1 cut(s) 621
BsaHI GRCGYC 1 cut(s) 345
BsaJI CCNNGG 7 cut(s) 340, 354, 355, 727, 770, 905, 924
BsaWI WCCGGW 2 cut(s) 255, 777
BsaXI ACNNNNNCTCC 4 cut(s) 245, 275, 745, 775
Bsc4I CCNNNNNNNGG 6 cut(s) 44, 397, 511, 552, 634, 928
Bse118I RCCGGY 2 cut(s) 255, 276
Bse1I ACTGG 2 cut(s) 505, 628
BseBI CCWGG 5 cut(s) 356, 386, 524, 542, 907
BseDI CCNNGG 7 cut(s) 340, 354, 355, 727, 770, 905, 924
BseLI CCNNNNNNNGG 6 cut(s) 44, 397, 511, 552, 634, 928
BseNI ACTGG 2 cut(s) 505, 628
BseRI GAGGAG 7 cut(s) 293, 437, 530, 650, 718, 859, 901
BseX3I CGGCCG 2 cut(s) 278, 568
BseXI GCAGC 1 cut(s) 46
Bsh1236I CGCG 3 cut(s) 239, 729, 772
Bsh1285I CGRYCG 3 cut(s) 256, 281, 571
BshFI GGCC 5 cut(s) 280, 360, 527, 545, 570
BshNI GGYRCC 3 cut(s) 14, 723, 774
BshTI ACCGGT 1 cut(s) 255
BsiEI CGRYCG 3 cut(s) 256, 281, 571
BsiHKAI GWGCWC 3 cut(s) 174, 263, 429
BslFI GGGAC 5 cut(s) 205, 824, 833, 884, 888
BslI CCNNNNNNNGG 6 cut(s) 44, 397, 511, 552, 634, 928
BsmAI GTCTC 3 cut(s) 79, 272, 870
BsmBI CGTCTC 3 cut(s) 79, 272, 870
BsmFI GGGAC 5 cut(s) 205, 824, 833, 884, 888
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 5 cut(s) 280, 360, 527, 545, 570
Bsp1286I GDGCHC 6 cut(s) 134, 174, 263, 429, 770, 923
Bsp143I GATC 7 cut(s) 231, 285, 333, 381, 444, 478, 486
BspANI GGCC 5 cut(s) 280, 360, 527, 545, 570
BspFNI CGCG 3 cut(s) 239, 729, 772
BspLI GGNNCC 8 cut(s) 16, 193, 725, 749, 755, 776, 812, 920
BspOI GCTAGC 1 cut(s) 744
BspPI GGATC 1 cut(s) 376
BspQI GCTCTTC 1 cut(s) 45
BspT107I GGYRCC 3 cut(s) 14, 723, 774
BsrFI RCCGGY 2 cut(s) 255, 276
BsrI ACTGG 2 cut(s) 505, 628
BssAI RCCGGY 2 cut(s) 255, 276
BssECI CCNNGG 7 cut(s) 340, 354, 355, 727, 770, 905, 924
BssMI GATC 7 cut(s) 231, 285, 333, 381, 444, 478, 486
BssNI GRCGYC 1 cut(s) 345
Bst2UI CCWGG 5 cut(s) 356, 386, 524, 542, 907
Bst4CI ACNGT 2 cut(s) 665, 881
Bst6I CTCTTC 2 cut(s) 45, 148
BstACI GRCGYC 1 cut(s) 345
BstBAI YACGTR 1 cut(s) 621
BstC8I GCNNGC 4 cut(s) 241, 362, 742, 770
BstDEI CTNAG 1 cut(s) 9
BstDSI CCRYGG 3 cut(s) 727, 770, 924
BstFNI CGCG 3 cut(s) 239, 729, 772
BstH2I RGCGCY 1 cut(s) 325
BstHHI GCGC 2 cut(s) 239, 324
BstKTI GATC 7 cut(s) 234, 288, 336, 384, 447, 481, 489
BstMAI GTCTC 3 cut(s) 79, 272, 870
BstMBI GATC 7 cut(s) 231, 285, 333, 381, 444, 478, 486
BstMCI CGRYCG 3 cut(s) 256, 281, 571
BstMWI GCNNNNNNNGC 8 cut(s) 14, 249, 258, 533, 542, 654, 682, 954
BstNI CCWGG 5 cut(s) 356, 386, 524, 542, 907
BstNSI RCATGY 1 cut(s) 316
BstSCI CCNGG 9 cut(s) 204, 340, 354, 384, 522, 540, 609, 816, 905
BstUI CGCG 3 cut(s) 239, 729, 772
BstV1I GCAGC 1 cut(s) 46
BstV2I GAAGAC 1 cut(s) 898
BstX2I RGATCY 1 cut(s) 381
BstYI RGATCY 1 cut(s) 381
BstZI CGGCCG 2 cut(s) 278, 568
BsuRI GGCC 5 cut(s) 280, 360, 527, 545, 570
BtgI CCRYGG 3 cut(s) 727, 770, 924
BtgZI GCGATG 1 cut(s) 176
BtrI CACGTC 1 cut(s) 679
BtsI GCAGTG 2 cut(s) 939, 980
BtsIMutI CAGTG 2 cut(s) 939, 980
Cac8I GCNNGC 4 cut(s) 241, 362, 742, 770
CfoI GCGC 2 cut(s) 239, 324
Cfr10I RCCGGY 2 cut(s) 255, 276
Cfr13I GGNCC 6 cut(s) 192, 202, 358, 388, 520, 811
Cfr42I CCGCGG 2 cut(s) 730, 773
CseI GACGC 1 cut(s) 334
Csp6I GTAC 2 cut(s) 316, 724
CspAI ACCGGT 1 cut(s) 255
CviAII CATG 3 cut(s) 313, 331, 484
CviQI GTAC 2 cut(s) 316, 724
DdeI CTNAG 1 cut(s) 9
DpnI GATC 7 cut(s) 233, 287, 335, 383, 446, 480, 488
DpnII GATC 7 cut(s) 231, 285, 333, 381, 444, 478, 486
DrdI GACNNNNNNGTC 1 cut(s) 900
DseDI GACNNNNNNGTC 1 cut(s) 900
EaeI YGGCCR 2 cut(s) 278, 568
EagI CGGCCG 2 cut(s) 278, 568
Eam1104I CTCTTC 2 cut(s) 45, 148
EarI CTCTTC 2 cut(s) 45, 148
EciI GGCGGA 2 cut(s) 182, 925
Ecl136II GAGCTC 1 cut(s) 427
EclXI CGGCCG 2 cut(s) 278, 568
Eco147I AGGCCT 1 cut(s) 545
Eco24I GRGCYC 4 cut(s) 134, 429, 770, 923
Eco47I GGWCC 5 cut(s) 192, 202, 388, 520, 811
Eco52I CGGCCG 2 cut(s) 278, 568
Eco53kI GAGCTC 1 cut(s) 427
Eco72I CACGTG 1 cut(s) 621
EcoICRI GAGCTC 1 cut(s) 427
EcoRII CCWGG 5 cut(s) 354, 384, 522, 540, 905
EcoT38I GRGCYC 4 cut(s) 134, 429, 770, 923
Esp3I CGTCTC 3 cut(s) 79, 272, 870
FaeI CATG 3 cut(s) 316, 334, 487
FaqI GGGAC 5 cut(s) 205, 824, 833, 884, 888
FatI CATG 3 cut(s) 312, 330, 483
FauI CCCGC 3 cut(s) 383, 722, 777
FbaI TGATCA 1 cut(s) 333
FblI GTMKAC 2 cut(s) 348, 498
Fnu4HI GCNGC 8 cut(s) 35, 528, 531, 534, 571, 658, 773, 930
FriOI GRGCYC 4 cut(s) 134, 429, 770, 923
Fsp4HI GCNGC 8 cut(s) 35, 528, 531, 534, 571, 658, 773, 930
FspBI CTAG 3 cut(s) 39, 741, 963
GlaI GCGC 2 cut(s) 238, 323
GluI GCNGC 8 cut(s) 35, 528, 531, 534, 571, 658, 773, 930
GsuI CTGGAG 1 cut(s) 524
HaeII RGCGCY 1 cut(s) 325
HaeIII GGCC 5 cut(s) 280, 360, 527, 545, 570
HgaI GACGC 1 cut(s) 334
HhaI GCGC 2 cut(s) 239, 324
Hin1I GRCGYC 1 cut(s) 345
Hin1II CATG 3 cut(s) 316, 334, 487
Hin6I GCGC 2 cut(s) 237, 322
HinP1I GCGC 2 cut(s) 237, 322
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HinfI GANTC 1 cut(s) 979
HphI GGTGA 3 cut(s) 59, 220, 328
Hpy166II GTNNAC 3 cut(s) 211, 349, 499
Hpy188III TCNNGA 4 cut(s) 190, 229, 448, 983
Hpy8I GTNNAC 3 cut(s) 211, 349, 499
Hpy99I CGWCG 5 cut(s) 143, 146, 149, 286, 350
HpyAV CCTTC 3 cut(s) 61, 193, 935
HpyCH4III ACNGT 2 cut(s) 665, 881
HpyCH4IV ACGT 5 cut(s) 459, 495, 501, 620, 678
HpyCH4V TGCA 4 cut(s) 34, 550, 648, 676
HpyF10VI GCNNNNNNNGC 8 cut(s) 14, 249, 258, 533, 542, 654, 682, 954
HpyF3I CTNAG 1 cut(s) 9
HpySE526I ACGT 5 cut(s) 459, 495, 501, 620, 678
Hsp92I GRCGYC 1 cut(s) 345
Hsp92II CATG 3 cut(s) 316, 334, 487
HspAI GCGC 2 cut(s) 237, 322
KpnI GGTACC 1 cut(s) 727
Ksp22I TGATCA 1 cut(s) 333
KspI CCGCGG 2 cut(s) 730, 773
Kzo9I GATC 7 cut(s) 231, 285, 333, 381, 444, 478, 486
LguI GCTCTTC 1 cut(s) 45
LmnI GCTCC 9 cut(s) 169, 266, 306, 424, 747, 753, 912, 918, 945
Lsp1109I GCAGC 1 cut(s) 46
MaeI CTAG 3 cut(s) 39, 741, 963
MaeII ACGT 5 cut(s) 459, 495, 501, 620, 678
MaeIII GTNAC 2 cut(s) 245, 598
MalI GATC 7 cut(s) 233, 287, 335, 383, 446, 480, 488
MboI GATC 7 cut(s) 231, 285, 333, 381, 444, 478, 486
MboII GAAGA 6 cut(s) 15, 62, 165, 409, 903, 962
MflI RGATCY 1 cut(s) 381
MhlI GDGCHC 6 cut(s) 134, 174, 263, 429, 770, 923
MluCI AATT 3 cut(s) 103, 667, 698
MmeI TCCRAC 1 cut(s) 333
MseI TTAA 1 cut(s) 120
MspA1I CMGCKG 2 cut(s) 729, 772
MspR9I CCNGG 9 cut(s) 206, 342, 356, 386, 524, 542, 611, 818, 907
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 5 cut(s) 356, 386, 524, 542, 907
MvnI CGCG 3 cut(s) 239, 729, 772
MwoI GCNNNNNNNGC 8 cut(s) 14, 249, 258, 533, 542, 654, 682, 954
NciI CCSGG 4 cut(s) 206, 342, 611, 818
NdeII GATC 7 cut(s) 231, 285, 333, 381, 444, 478, 486
NheI GCTAGC 1 cut(s) 740
NlaIII CATG 3 cut(s) 316, 334, 487
NlaIV GGNNCC 8 cut(s) 16, 193, 725, 749, 755, 776, 812, 920
NmeAIII GCCGAG 1 cut(s) 983
NmuCI GTSAC 2 cut(s) 245, 598
NspI RCATGY 1 cut(s) 316
PasI CCCWGGG 1 cut(s) 355
PceI AGGCCT 1 cut(s) 545
PciI ACATGT 1 cut(s) 312
PciSI GCTCTTC 1 cut(s) 45
PcsI WCGNNNNNNNCGW 4 cut(s) 144, 290, 426, 444
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 1 cut(s) 979
PfoI TCCNGGA 2 cut(s) 384, 609
PinAI ACCGGT 1 cut(s) 255
PkrI GCNGC 8 cut(s) 36, 529, 532, 535, 572, 659, 774, 931
PmaCI CACGTG 1 cut(s) 621
PmlI CACGTG 1 cut(s) 621
Ppu21I YACGTR 1 cut(s) 621
PscI ACATGT 1 cut(s) 312
Psp124BI GAGCTC 1 cut(s) 429
Psp6I CCWGG 5 cut(s) 354, 384, 522, 540, 905
PspCI CACGTG 1 cut(s) 621
PspGI CCWGG 5 cut(s) 354, 384, 522, 540, 905
PspN4I GGNNCC 8 cut(s) 16, 193, 725, 749, 755, 776, 812, 920
PspPI GGNCC 6 cut(s) 192, 202, 358, 388, 520, 811
PsuI RGATCY 1 cut(s) 381
RsaI GTAC 2 cut(s) 317, 725
RsaNI GTAC 2 cut(s) 316, 724
SacI GAGCTC 1 cut(s) 429
SacII CCGCGG 2 cut(s) 730, 773
SalI GTCGAC 1 cut(s) 347
SapI GCTCTTC 1 cut(s) 45
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 8 cut(s) 35, 528, 531, 534, 571, 658, 773, 930
Sau3AI GATC 7 cut(s) 231, 285, 333, 381, 444, 478, 486
Sau96I GGNCC 6 cut(s) 192, 202, 358, 388, 520, 811
ScrFI CCNGG 9 cut(s) 206, 342, 356, 386, 524, 542, 611, 818, 907
SduI GDGCHC 6 cut(s) 134, 174, 263, 429, 770, 923
Sfr303I CCGCGG 2 cut(s) 730, 773
SgrBI CCGCGG 2 cut(s) 730, 773
SinI GGWCC 5 cut(s) 192, 202, 388, 520, 811
Sse9I AATT 3 cut(s) 103, 667, 698
SseBI AGGCCT 1 cut(s) 545
SspI AATATT 1 cut(s) 118
SspMI CTAG 3 cut(s) 39, 741, 963
SstI GAGCTC 1 cut(s) 429
StuI AGGCCT 1 cut(s) 545
StyD4I CCNGG 9 cut(s) 204, 340, 354, 384, 522, 540, 609, 816, 905
TaaI ACNGT 2 cut(s) 665, 881
TaiI ACGT 5 cut(s) 462, 498, 504, 623, 681
TaqII GACCGA 1 cut(s) 209
TasI AATT 3 cut(s) 103, 667, 698
TauI GCSGC 7 cut(s) 530, 533, 536, 573, 660, 775, 932
TfiI GAWTC 1 cut(s) 979
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TscAI CASTG 2 cut(s) 939, 980
TseFI GTSAC 2 cut(s) 245, 598
TseI GCWGC 1 cut(s) 34
Tsp45I GTSAC 2 cut(s) 245, 598
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 617
TspRI CASTG 2 cut(s) 939, 980
VpaK11BI GGWCC 5 cut(s) 192, 202, 388, 520, 811
XceI RCATGY 1 cut(s) 316
XmiI GTMKAC 2 cut(s) 348, 498
XspI CTAG 3 cut(s) 39, 741, 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.