FvH4_5g26920

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0007513
Physical Location & Seq
Forward (+)
18257560 .. 18268562
11003 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g26920.t7

Sequence Viewer

Length: 1074 bp
ATGTCGAACGCCGTGGCGAATGGGCTGGCTGGCGCCGGAGGTGGTATCATTGCCCAGATTATCACTTATCCTCTCCAAACTGTCAACACGCGCCAGCAAACCGAGAGAGTCGCCAAGCAATCCTTAGATACTTCCAAACGCCTCGGCACTCTTCTCCAAATCCTCCAGGTCATCAGAACCGACGGTTGGGGAGGACTCTACAGCGGCCTCAAGCCGTCTCTGCTCGGCACTGCTGCTTCACAGGGCATTTATTACTATTTTTATCAAGTGTTTAAAAACAAGGCTGAGGCTATAGCTGCTGCCCGTAAACTCAAAGGACGTGGGGATGGAACTATTGGGATGTTTTCTTGGCTTACTGTGGCAGCCTTGGCTGGTTCCTTGAACGTGCTGCTGACAATTCCTATATGGGTTCTGGTGACTCGTATGCAGACACATACTCAAGCCGAGAGAAAAATCATGGAGGAAAGAAAGAACGCTCTGTTGAGGGAAGCTTCTGAAAACGGTTTGACAGATTCCGAATTACAACACAAATTGGATGAACTTGATTCAATAAAACCTCGTCCTTATGGAACTTTGCAAGCAGTACACGAGGTTTATACTGAAGCCGGAATTACTGGATTTTGGAAAGGCATTGTTCCAACACTCATTATGGTTTGCAACCCATCAATACAGTTCATGATTTATGAAGGCTCGTTAAAGCGTCTTAGAGCAAAACGTGCTGCCAGCAAGCAGGGAAAGAAAAATATAACTGCTTTAGAGGTTTTCTTGTTAGGGGCCTTGGCAAAACTAGGAGCAACTGTCACAACATATCCATTGTTAGTTGTCAAGTCAAGATTGCAAGCTAAGCAGGAGATTGGTGGGAATGTTTCACTAAGATACTCAGGTACTTTTGATGCCATATTGAAGATGATCCAGTACGAAGGATTGCCTAGCTTTTACAAAGGGATGAGCACAAAGATAGTACAGAGTGTTTTTGCAGCTTCTGTACTTTTTATGGTCAAGGAGGAATTTGTCAAGGCTTACATGTTGCTGGAAGATGAATGCAACAAAGTTCTGTTTAGTTCAGCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

358

Amino Acids

39.2

Weight (kDa)

9.68

Isoelectric Point (pI)

38.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 3 - 93 2.8e-17 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 32
AccII CGCG 1 cut(s) 91
AciI CCGC 1 cut(s) 204
AclWI GGATC 1 cut(s) 904
AcsI RAATTY 1 cut(s) 1007
AcuI CTGAAG 1 cut(s) 621
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 5 cut(s) 585, 886, 917, 963, 987
AfiI CCNNNNNNNGG 1 cut(s) 186
AflIII ACRYGT 1 cut(s) 1023
AgsI TTSAA 3 cut(s) 382, 549, 904
AjiI CACGTC 1 cut(s) 320
AjnI CCWGG 1 cut(s) 165
AjuI GAANNNNNNNTTGG 2 cut(s) 169, 201
AluBI AGCT 5 cut(s) 296, 491, 842, 933, 980
AluI AGCT 5 cut(s) 296, 491, 842, 933, 980
Alw21I GWGCWC 1 cut(s) 953
Alw26I GTCTC 1 cut(s) 222
AlwI GGATC 1 cut(s) 904
AlwNI CAGNNNCTG 1 cut(s) 983
AoxI GGCC 2 cut(s) 205, 774
ApeKI GCWGC 7 cut(s) 233, 296, 299, 362, 388, 719, 977
ApoI RAATTY 1 cut(s) 1007
AspLEI GCGC 2 cut(s) 35, 93
AspS9I GGNCC 1 cut(s) 774
AsuHPI GGTGA 1 cut(s) 427
BaeI ACNNNNGTAYC 2 cut(s) 868, 901
BanI GGYRCC 1 cut(s) 32
BauI CACGAG 1 cut(s) 587
Bbv12I GWGCWC 1 cut(s) 953
BbvCI CCTCAGC 1 cut(s) 285
BbvI GCAGC 7 cut(s) 220, 283, 286, 374, 375, 706, 989
BccI CCATC 2 cut(s) 320, 670
BceAI ACGGC 1 cut(s) 199
BciT130I CCWGG 1 cut(s) 167
BcoDI GTCTC 1 cut(s) 222
BfaI CTAG 2 cut(s) 788, 930
BfmI CTRYAG 2 cut(s) 199, 291
BfoI RGCGCY 1 cut(s) 36
BisI GCNGC 8 cut(s) 205, 234, 297, 300, 363, 389, 720, 978
BlpI GCTNAGC 1 cut(s) 843
BlsI GCNGC 8 cut(s) 206, 235, 298, 301, 364, 390, 721, 979
Bme1390I CCNGG 1 cut(s) 167
BmgBI CACGTC 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 774
BmiI GGNNCC 3 cut(s) 34, 376, 775
BmrFI CCNGG 1 cut(s) 167
BmsI GCATC 1 cut(s) 883
BpmI CTGGAG 1 cut(s) 149
Bpu10I CCTNAGC 1 cut(s) 285
Bpu1102I GCTNAGC 1 cut(s) 843
BpuEI CTTGAG 2 cut(s) 194, 423
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 4 cut(s) 12, 142, 366, 777
BsaXI ACNNNNNCTCC 2 cut(s) 783, 813
Bsc4I CCNNNNNNNGG 1 cut(s) 186
Bse1I ACTGG 2 cut(s) 619, 913
Bse3DI GCAATG 1 cut(s) 48
BseBI CCWGG 1 cut(s) 167
BseDI CCNNGG 4 cut(s) 12, 142, 366, 777
BseGI GGATG 4 cut(s) 331, 345, 541, 951
BseLI CCNNNNNNNGG 1 cut(s) 186
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 2 cut(s) 276, 894
BseNI ACTGG 2 cut(s) 619, 913
BseXI GCAGC 7 cut(s) 220, 283, 286, 374, 375, 706, 989
Bsh1236I CGCG 1 cut(s) 91
BshFI GGCC 2 cut(s) 207, 776
BshNI GGYRCC 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 953
BsiSI CCGG 2 cut(s) 36, 606
BslI CCNNNNNNNGG 1 cut(s) 186
BsmAI GTCTC 1 cut(s) 222
BsmBI CGTCTC 1 cut(s) 222
BsmI GAATGC 1 cut(s) 1046
BsnI GGCC 2 cut(s) 207, 776
Bsp1286I GDGCHC 1 cut(s) 953
Bsp143I GATC 1 cut(s) 909
Bsp1720I GCTNAGC 1 cut(s) 843
BspACI CCGC 1 cut(s) 204
BspANI GGCC 2 cut(s) 207, 776
BspCNI CTCAG 2 cut(s) 277, 893
BspFNI CGCG 1 cut(s) 91
BspHI TCATGA 1 cut(s) 675
BspLI GGNNCC 3 cut(s) 34, 376, 775
BspPI GGATC 1 cut(s) 904
BspT107I GGYRCC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 48
BsrI ACTGG 2 cut(s) 619, 913
BssECI CCNNGG 4 cut(s) 12, 142, 366, 777
BssMI GATC 1 cut(s) 909
BssNI GRCGYC 1 cut(s) 33
BssSI CACGAG 1 cut(s) 587
BssT1I CCWWGG 2 cut(s) 366, 777
Bst2BI CACGAG 1 cut(s) 587
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 6 cut(s) 82, 185, 358, 503, 672, 799
Bst6I CTCTTC 1 cut(s) 156
BstACI GRCGYC 1 cut(s) 33
BstAPI GCANNNNNTGC 1 cut(s) 716
BstC8I GCNNGC 7 cut(s) 27, 31, 95, 579, 724, 728, 840
BstDEI CTNAG 6 cut(s) 124, 285, 704, 843, 872, 880
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 4 cut(s) 331, 345, 541, 951
BstFNI CGCG 1 cut(s) 91
BstH2I RGCGCY 1 cut(s) 36
BstHHI GCGC 2 cut(s) 35, 93
BstKTI GATC 1 cut(s) 912
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 1 cut(s) 909
BstMWI GCNNNNNNNGC 5 cut(s) 220, 296, 368, 716, 844
BstNI CCWGG 1 cut(s) 167
BstNSI RCATGY 1 cut(s) 1027
BstSCI CCNGG 1 cut(s) 165
BstSFI CTRYAG 2 cut(s) 199, 291
BstUI CGCG 1 cut(s) 91
BstV1I GCAGC 7 cut(s) 220, 283, 286, 374, 375, 706, 989
BsuRI GGCC 2 cut(s) 207, 776
BtgI CCRYGG 1 cut(s) 12
BtrI CACGTC 1 cut(s) 320
BtsCI GGATG 4 cut(s) 331, 345, 541, 951
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 1 cut(s) 228
Cac8I GCNNGC 7 cut(s) 27, 31, 95, 579, 724, 728, 840
CaiI CAGNNNCTG 1 cut(s) 983
CciI TCATGA 1 cut(s) 675
CfoI GCGC 2 cut(s) 35, 93
Cfr13I GGNCC 1 cut(s) 774
CseI GACGC 1 cut(s) 689
Csp6I GTAC 5 cut(s) 584, 885, 916, 962, 986
CspCI CAANNNNNGTGG 2 cut(s) 301, 336
CviAII CATG 3 cut(s) 457, 676, 1024
CviQI GTAC 5 cut(s) 584, 885, 916, 962, 986
DdeI CTNAG 6 cut(s) 124, 285, 704, 843, 872, 880
DinI GGCGCC 1 cut(s) 34
DpnI GATC 1 cut(s) 911
DpnII GATC 1 cut(s) 909
DraI TTTAAA 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Eco130I CCWWGG 2 cut(s) 366, 777
Eco57I CTGAAG 1 cut(s) 621
EcoO109I RGGNCCY 1 cut(s) 774
EcoRII CCWGG 1 cut(s) 165
EcoT14I CCWWGG 2 cut(s) 366, 777
EgeI GGCGCC 1 cut(s) 34
EheI GGCGCC 1 cut(s) 34
ErhI CCWWGG 2 cut(s) 366, 777
Esp3I CGTCTC 1 cut(s) 222
FaeI CATG 3 cut(s) 460, 679, 1027
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FatI CATG 3 cut(s) 456, 675, 1023
Fnu4HI GCNGC 8 cut(s) 205, 234, 297, 300, 363, 389, 720, 978
FokI GGATG 4 cut(s) 338, 352, 548, 958
Fsp4HI GCNGC 8 cut(s) 205, 234, 297, 300, 363, 389, 720, 978
FspBI CTAG 2 cut(s) 788, 930
GlaI GCGC 2 cut(s) 34, 92
GluI GCNGC 8 cut(s) 205, 234, 297, 300, 363, 389, 720, 978
GsuI CTGGAG 1 cut(s) 149
HaeII RGCGCY 1 cut(s) 36
HaeIII GGCC 2 cut(s) 207, 776
HapII CCGG 2 cut(s) 36, 606
HgaI GACGC 1 cut(s) 689
HhaI GCGC 2 cut(s) 35, 93
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 3 cut(s) 460, 679, 1027
Hin6I GCGC 2 cut(s) 33, 91
HinP1I GCGC 2 cut(s) 33, 91
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HindIII AAGCTT 1 cut(s) 489
HinfI GANTC 5 cut(s) 108, 195, 418, 512, 545
HpaII CCGG 2 cut(s) 36, 606
HphI GGTGA 1 cut(s) 427
Hpy166II GTNNAC 3 cut(s) 85, 308, 586
Hpy188I TCNGA 3 cut(s) 176, 496, 517
Hpy188III TCNNGA 2 cut(s) 676, 831
Hpy8I GTNNAC 3 cut(s) 85, 308, 586
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 2 cut(s) 680, 914
HpyCH4III ACNGT 6 cut(s) 82, 185, 358, 503, 672, 799
HpyCH4IV ACGT 3 cut(s) 319, 384, 715
HpyCH4V TGCA 6 cut(s) 427, 577, 657, 838, 977, 1044
HpyF10VI GCNNNNNNNGC 5 cut(s) 220, 296, 368, 716, 844
HpyF3I CTNAG 6 cut(s) 124, 285, 704, 843, 872, 880
HpySE526I ACGT 3 cut(s) 319, 384, 715
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 3 cut(s) 460, 679, 1027
HspAI GCGC 2 cut(s) 33, 91
KasI GGCGCC 1 cut(s) 32
Kzo9I GATC 1 cut(s) 909
LmnI GCTCC 1 cut(s) 791
Lsp1109I GCAGC 7 cut(s) 220, 283, 286, 374, 375, 706, 989
LweI GCATC 1 cut(s) 883
MaeI CTAG 2 cut(s) 788, 930
MaeII ACGT 3 cut(s) 319, 384, 715
MaeIII GTNAC 2 cut(s) 415, 799
MalI GATC 1 cut(s) 911
MboI GATC 1 cut(s) 909
MboII GAAGA 3 cut(s) 143, 916, 1046
MhlI GDGCHC 1 cut(s) 953
MluCI AATT 5 cut(s) 396, 518, 530, 609, 1007
Mly113I GGCGCC 1 cut(s) 33
MlyI GAGTC 3 cut(s) 117, 189, 412
MmeI TCCRAC 1 cut(s) 662
MseI TTAA 2 cut(s) 273, 695
MspA1I CMGCKG 1 cut(s) 204
MspI CCGG 2 cut(s) 36, 606
MspR9I CCNGG 1 cut(s) 167
Mva1269I GAATGC 1 cut(s) 1046
MvaI CCWGG 1 cut(s) 167
MvnI CGCG 1 cut(s) 91
MwoI GCNNNNNNNGC 5 cut(s) 220, 296, 368, 716, 844
NarI GGCGCC 1 cut(s) 33
NdeII GATC 1 cut(s) 909
NlaIII CATG 3 cut(s) 460, 679, 1027
NlaIV GGNNCC 3 cut(s) 34, 376, 775
NmeAIII GCCGAG 3 cut(s) 123, 204, 469
NmuCI GTSAC 2 cut(s) 415, 799
NspI RCATGY 1 cut(s) 1027
PagI TCATGA 1 cut(s) 675
PciI ACATGT 1 cut(s) 1023
PctI GAATGC 1 cut(s) 1046
PfeI GAWTC 2 cut(s) 512, 545
PkrI GCNGC 8 cut(s) 206, 235, 298, 301, 364, 390, 721, 979
PleI GAGTC 3 cut(s) 116, 189, 412
PluTI GGCGCC 1 cut(s) 36
PpsI GAGTC 3 cut(s) 116, 189, 412
PscI ACATGT 1 cut(s) 1023
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 3 cut(s) 34, 376, 775
PspPI GGNCC 1 cut(s) 774
PstNI CAGNNNCTG 1 cut(s) 983
RsaI GTAC 5 cut(s) 585, 886, 917, 963, 987
RsaNI GTAC 5 cut(s) 584, 885, 916, 962, 986
SaqAI TTAA 2 cut(s) 273, 695
SatI GCNGC 8 cut(s) 205, 234, 297, 300, 363, 389, 720, 978
Sau3AI GATC 1 cut(s) 909
Sau96I GGNCC 1 cut(s) 774
SchI GAGTC 3 cut(s) 117, 189, 412
ScrFI CCNGG 1 cut(s) 167
SduI GDGCHC 1 cut(s) 953
SfaNI GCATC 1 cut(s) 883
SfcI CTRYAG 2 cut(s) 199, 291
SfoI GGCGCC 1 cut(s) 34
SmlI CTYRAG 2 cut(s) 209, 438
SmoI CTYRAG 2 cut(s) 209, 438
Sse9I AATT 5 cut(s) 396, 518, 530, 609, 1007
SsiI CCGC 1 cut(s) 204
SspDI GGCGCC 1 cut(s) 32
SspMI CTAG 2 cut(s) 788, 930
StyD4I CCNGG 1 cut(s) 165
StyI CCWWGG 2 cut(s) 366, 777
TaaI ACNGT 6 cut(s) 82, 185, 358, 503, 672, 799
TaiI ACGT 3 cut(s) 322, 387, 718
TaqI TCGA 1 cut(s) 5
TasI AATT 5 cut(s) 396, 518, 530, 609, 1007
TatI WGTACW 3 cut(s) 583, 961, 985
TauI GCSGC 1 cut(s) 207
TfiI GAWTC 2 cut(s) 512, 545
Tru1I TTAA 2 cut(s) 273, 695
Tru9I TTAA 2 cut(s) 273, 695
TscAI CASTG 1 cut(s) 235
TseFI GTSAC 2 cut(s) 415, 799
TseI GCWGC 7 cut(s) 233, 296, 299, 362, 388, 719, 977
Tsp45I GTSAC 2 cut(s) 415, 799
TspDTI ATGAA 4 cut(s) 552, 664, 699, 1053
TspRI CASTG 1 cut(s) 235
XapI RAATTY 1 cut(s) 1007
XceI RCATGY 1 cut(s) 1027
XspI CTAG 2 cut(s) 788, 930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.