Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007513

Physical Location & Seq

Genomic Coordinates Reverse (-)

117619 .. 125066

Gene Structure 7448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G000200.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGTCGAACGCCGTGGCGAATGGGCTGGCAGGAGCTGGAGGTGGCATGATTGCCCAGATTATCACTTATCCCCTCCAAACAGTCAATACGCGCCAACAAACCGAGAGAGTTGCCAAGAAATCCTTAGCTAACTCCAAACGCCTTGGGACTCTTGTTCAAATCCTCCAGGTAATACGAAGCGACGGTTGGGGAGGACTATACAGCGGCCTTAAGCCTTCTCTGCTTGGGACTGCCGCTTCACAGGGCATCTATTACTATTTTTATCAGGTTTTCAAAAACAAGGCTGAGGCCATTGCAGTTGCCCGGAAAGCAAAAGGACATGGGGATGGTACTGTTGGGATGTTTTCTTGGCTTCTTGTGGCGGCTTTAGCTGGTTCCCTGAACGTGTTGCTGACAAATCCTATATGGGTTCTTGTGACTCGTATGCAGACACATACGCAAGCTGAGAGAAAAATTATGGAGGAAAGAAAGGAAGCACTCGTAAAGGAAGCTTCTGAAAACTCTTTGACAGGTTCAGAATTGCAAGTTAAATTGGCTGAACTTGATTCAATAAAACCTCATCCTTATGGAACTTGGCAAGCGGTAAACGAGGTTTATTCTGAAGCCAAGATTACCGGATTTTGGAAAGGGATTGTCCCAACGCTTATAATGGTTTGCAACCCAGCAATACAGTTCATGATTTATGAAAGCTCCTTGAAGCATCTTAGGGCAAAACGTGCTGACAGAAAGCAAGGATCAAAAAATATAACTGCTTTGGAGGTCTTCTTGTTAGGGGCCTTGGCAAAACTAGGCGCAACTATCTCAACCTATCCGTTGTTAGTTGTCAAGTCAAGGCTGCAAGCAAAGCAGGAGATTGGCGGGAATATTTCACTAAGATACTCAGGTACTGTTGATGCTATAAGGAAGATGATCCAGTATGAAGGATTGCCTGGGTTTTACAAAGGGATGAGCACAAAGATAGCACAGAGTGTTTTTGCTGCTTCTGTACTTTTTATGGTTAAGGAGGAACTCCTCAAGATTTATACGTTGCTGGCAGATAAGTGCAATAAAGTTCTGCTTAGTTCAGCAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

358

Amino Acids

39.0

Weight (kDa)

9.81

Isoelectric Point (pI)

29.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007513)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26920 FvH4_5g26920 FvH4_5g26920 FvH4_5g26920 FvH4_5g26920 FvH4_5g26920
malus_domestica	MD00G1181800.v1.1
prunus_persica	Prupe.5G000200_v2.0.a1 Prupe.5G000200_v2.0.a1 Prupe.5G000200_v2.0.a1 Prupe.5G000200_v2.0.a1 Prupe.5G000200_v2.0.a1
pyrus_communis	pycom16g26390
rosa_chinensis	RchiOBHm_Chr7g0217961
rosa_laevigata	RLG00000002429
rosa_multiflora	Rmu_sc0012998.1_g000003 Rmu_sc0014729.1_g000002
rosa_roxburghii	Rroxscaffold_3G00241600
rosa_rugosa	Rorug07G0172400
rosa_samantha	Rh7AG314600 Rh7BG304900 Rh7CG332100 Rh7DG312800
rosa_wichuraiana	Rw0G017300 Rw7G026600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	647
AccII	CGCG	1 cut(s)	91
AciI	CCGC	5 cut(s)	204, 234, 362, 581, 858
AclWI	GGATC	2 cut(s)	742, 904
AcuI	CTGAAG	1 cut(s)	621
AdeI	CACNNNGTG	1 cut(s)	968
AfaI	GTAC	3 cut(s)	331, 886, 987
AfiI	CCNNNNNNNGG	1 cut(s)	621
AflII	CTTAAG	1 cut(s)	209
AflIII	ACRYGT	1 cut(s)	384
AgsI	TTSAA	4 cut(s)	158, 274, 549, 697
AjnI	CCWGG	2 cut(s)	165, 928
AjuI	GAANNNNNNNTTGG	2 cut(s)	169, 201
AluBI	AGCT	6 cut(s)	35, 128, 371, 443, 491, 690
AluI	AGCT	6 cut(s)	35, 128, 371, 443, 491, 690
Alw21I	GWGCWC	1 cut(s)	953
AlwI	GGATC	2 cut(s)	742, 904
AlwNI	CAGNNNCTG	2 cut(s)	35, 887
AoxI	GGCC	3 cut(s)	205, 288, 774
ApeKI	GCWGC	2 cut(s)	835, 977
AspLEI	GCGC	2 cut(s)	93, 794
AspS9I	GGNCC	1 cut(s)	774
AsuC2I	CCSGG	1 cut(s)	304
BaeI	ACNNNNGTAYC	2 cut(s)	868, 901
BbsI	GAAGAC	1 cut(s)	754
Bbv12I	GWGCWC	1 cut(s)	953
BbvCI	CCTCAGC	1 cut(s)	285
BbvI	GCAGC	2 cut(s)	822, 964
BccI	CCATC	1 cut(s)	320
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BciT130I	CCWGG	2 cut(s)	167, 930
BcnI	CCSGG	1 cut(s)	304
BfaI	CTAG	1 cut(s)	788
BfrI	CTTAAG	1 cut(s)	209
BisI	GCNGC	5 cut(s)	205, 234, 363, 836, 978
BlsI	GCNGC	5 cut(s)	206, 235, 364, 837, 979
Bme1390I	CCNGG	3 cut(s)	167, 304, 930
BmgT120I	GGNCC	1 cut(s)	774
BmiI	GGNNCC	2 cut(s)	376, 775
BmrFI	CCNGG	3 cut(s)	167, 304, 930
BmsI	GCATC	3 cut(s)	255, 709, 883
BpiI	GAAGAC	1 cut(s)	754
BpmI	CTGGAG	2 cut(s)	57, 149
Bpu10I	CCTNAGC	2 cut(s)	124, 285
BpuEI	CTTGAG	1 cut(s)	998
BpuMI	CCSGG	1 cut(s)	304
BsaJI	CCNNGG	4 cut(s)	12, 142, 777, 929
BsaWI	WCCGGW	1 cut(s)	614
Bsc4I	CCNNNNNNNGG	1 cut(s)	621
Bse1I	ACTGG	1 cut(s)	913
Bse3DI	GCAATG	1 cut(s)	291
BseBI	CCWGG	2 cut(s)	167, 930
BseDI	CCNNGG	4 cut(s)	12, 142, 777, 929
BseGI	GGATG	4 cut(s)	331, 345, 559, 951
BseLI	CCNNNNNNNGG	1 cut(s)	621
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	3 cut(s)	276, 435, 894
BseNI	ACTGG	1 cut(s)	913
BseRI	GAGGAG	1 cut(s)	1001
BseXI	GCAGC	2 cut(s)	822, 964
BseYI	CCCAGC	1 cut(s)	661
Bsh1236I	CGCG	1 cut(s)	91
BshFI	GGCC	3 cut(s)	207, 290, 776
BsiHKAI	GWGCWC	1 cut(s)	953
BsiSI	CCGG	2 cut(s)	304, 615
BslFI	GGGAC	3 cut(s)	160, 241, 620
BslI	CCNNNNNNNGG	1 cut(s)	621
BsmFI	GGGAC	3 cut(s)	160, 241, 620
BsnI	GGCC	3 cut(s)	207, 290, 776
Bsp1286I	GDGCHC	1 cut(s)	953
Bsp143I	GATC	2 cut(s)	734, 909
BspACI	CCGC	5 cut(s)	204, 234, 362, 581, 858
BspANI	GGCC	3 cut(s)	207, 290, 776
BspCNI	CTCAG	3 cut(s)	277, 436, 893
BspFNI	CGCG	1 cut(s)	91
BspHI	TCATGA	1 cut(s)	675
BspLI	GGNNCC	2 cut(s)	376, 775
BspPI	GGATC	2 cut(s)	742, 904
BspTI	CTTAAG	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	913
BssECI	CCNNGG	4 cut(s)	12, 142, 777, 929
BssMI	GATC	2 cut(s)	734, 909
BssT1I	CCWWGG	2 cut(s)	142, 777
Bst2UI	CCWGG	2 cut(s)	167, 930
Bst4CI	ACNGT	5 cut(s)	82, 185, 334, 672, 889
BstAFI	CTTAAG	1 cut(s)	209
BstAPI	GCANNNNNTGC	1 cut(s)	716
BstC8I	GCNNGC	5 cut(s)	27, 441, 579, 840, 1032
BstDEI	CTNAG	7 cut(s)	124, 285, 444, 704, 872, 880, 1058
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	4 cut(s)	331, 345, 559, 951
BstFNI	CGCG	1 cut(s)	91
BstHHI	GCGC	2 cut(s)	93, 794
BstKTI	GATC	2 cut(s)	737, 912
BstMBI	GATC	2 cut(s)	734, 909
BstMWI	GCNNNNNNNGC	5 cut(s)	220, 308, 368, 716, 844
BstNI	CCWGG	2 cut(s)	167, 930
BstSCI	CCNGG	3 cut(s)	165, 302, 928
BstUI	CGCG	1 cut(s)	91
BstV1I	GCAGC	2 cut(s)	822, 964
BstV2I	GAAGAC	1 cut(s)	754
BsuRI	GGCC	3 cut(s)	207, 290, 776
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	4 cut(s)	331, 345, 559, 951
Cac8I	GCNNGC	5 cut(s)	27, 441, 579, 840, 1032
CaiI	CAGNNNCTG	2 cut(s)	35, 887
CciI	TCATGA	1 cut(s)	675
CfoI	GCGC	2 cut(s)	93, 794
Cfr13I	GGNCC	1 cut(s)	774
Csp6I	GTAC	3 cut(s)	330, 885, 986
CviAII	CATG	3 cut(s)	46, 320, 676
CviQI	GTAC	3 cut(s)	330, 885, 986
DdeI	CTNAG	7 cut(s)	124, 285, 444, 704, 872, 880, 1058
DpnI	GATC	2 cut(s)	736, 911
DpnII	GATC	2 cut(s)	734, 909
DraIII	CACNNNGTG	1 cut(s)	968
Eco130I	CCWWGG	2 cut(s)	142, 777
Eco57I	CTGAAG	1 cut(s)	621
EcoO109I	RGGNCCY	1 cut(s)	774
EcoRII	CCWGG	2 cut(s)	165, 928
EcoT14I	CCWWGG	2 cut(s)	142, 777
ErhI	CCWWGG	2 cut(s)	142, 777
FaeI	CATG	3 cut(s)	49, 323, 679
FalI	AAGNNNNNCTT	4 cut(s)	107, 139, 1041, 1073
FaqI	GGGAC	3 cut(s)	160, 241, 620
FatI	CATG	3 cut(s)	45, 319, 675
FauI	CCCGC	1 cut(s)	851
Fnu4HI	GCNGC	5 cut(s)	205, 234, 363, 836, 978
FokI	GGATG	4 cut(s)	338, 352, 546, 958
Fsp4HI	GCNGC	5 cut(s)	205, 234, 363, 836, 978
FspBI	CTAG	1 cut(s)	788
GlaI	GCGC	2 cut(s)	92, 793
GluI	GCNGC	5 cut(s)	205, 234, 363, 836, 978
GsaI	CCCAGC	1 cut(s)	665
GsuI	CTGGAG	2 cut(s)	57, 149
HaeIII	GGCC	3 cut(s)	207, 290, 776
HapII	CCGG	2 cut(s)	304, 615
HhaI	GCGC	2 cut(s)	93, 794
Hin1II	CATG	3 cut(s)	49, 323, 679
Hin6I	GCGC	2 cut(s)	91, 792
HinP1I	GCGC	2 cut(s)	91, 792
HindIII	AAGCTT	1 cut(s)	489
HinfI	GANTC	3 cut(s)	148, 418, 545
HpaII	CCGG	2 cut(s)	304, 615
Hpy166II	GTNNAC	1 cut(s)	586
Hpy188I	TCNGA	3 cut(s)	496, 517, 601
Hpy188III	TCNNGA	2 cut(s)	676, 1015
Hpy8I	GTNNAC	1 cut(s)	586
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	2 cut(s)	225, 914
HpyCH4III	ACNGT	5 cut(s)	82, 185, 334, 672, 889
HpyCH4IV	ACGT	3 cut(s)	384, 715, 1025
HpyCH4V	TGCA	6 cut(s)	296, 427, 523, 657, 838, 1044
HpyF10VI	GCNNNNNNNGC	5 cut(s)	220, 308, 368, 716, 844
HpyF3I	CTNAG	7 cut(s)	124, 285, 444, 704, 872, 880, 1058
HpySE526I	ACGT	3 cut(s)	384, 715, 1025
Hsp92II	CATG	3 cut(s)	49, 323, 679
HspAI	GCGC	2 cut(s)	91, 792
Kzo9I	GATC	2 cut(s)	734, 909
LmnI	GCTCC	2 cut(s)	32, 695
Lsp1109I	GCAGC	2 cut(s)	822, 964
LweI	GCATC	3 cut(s)	255, 709, 883
MaeI	CTAG	1 cut(s)	788
MaeII	ACGT	3 cut(s)	384, 715, 1025
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	2 cut(s)	736, 911
MboI	GATC	2 cut(s)	734, 909
MboII	GAAGA	2 cut(s)	754, 916
MhlI	GDGCHC	1 cut(s)	953
MluCI	AATT	3 cut(s)	453, 518, 530
MlyI	GAGTC	2 cut(s)	142, 412
MseI	TTAA	3 cut(s)	210, 528, 999
MslI	CAYNNNNRTG	2 cut(s)	324, 564
MspA1I	CMGCKG	1 cut(s)	204
MspCI	CTTAAG	1 cut(s)	209
MspI	CCGG	2 cut(s)	304, 615
MspR9I	CCNGG	3 cut(s)	167, 304, 930
MvaI	CCWGG	2 cut(s)	167, 930
MvnI	CGCG	1 cut(s)	91
MwoI	GCNNNNNNNGC	5 cut(s)	220, 308, 368, 716, 844
NciI	CCSGG	1 cut(s)	304
NdeII	GATC	2 cut(s)	734, 909
NlaIII	CATG	3 cut(s)	49, 323, 679
NlaIV	GGNNCC	2 cut(s)	376, 775
NmuCI	GTSAC	1 cut(s)	415
PagI	TCATGA	1 cut(s)	675
PfeI	GAWTC	1 cut(s)	545
PkrI	GCNGC	5 cut(s)	206, 235, 364, 837, 979
PleI	GAGTC	2 cut(s)	142, 412
PpsI	GAGTC	2 cut(s)	142, 412
PsiI	TTATAA	1 cut(s)	647
Psp6I	CCWGG	2 cut(s)	165, 928
PspFI	CCCAGC	1 cut(s)	661
PspGI	CCWGG	2 cut(s)	165, 928
PspN4I	GGNNCC	2 cut(s)	376, 775
PspPI	GGNCC	1 cut(s)	774
PstNI	CAGNNNCTG	2 cut(s)	35, 887
RsaI	GTAC	3 cut(s)	331, 886, 987
RsaNI	GTAC	3 cut(s)	330, 885, 986
RseI	CAYNNNNRTG	2 cut(s)	324, 564
SaqAI	TTAA	3 cut(s)	210, 528, 999
SatI	GCNGC	5 cut(s)	205, 234, 363, 836, 978
Sau3AI	GATC	2 cut(s)	734, 909
Sau96I	GGNCC	1 cut(s)	774
SchI	GAGTC	2 cut(s)	142, 412
ScrFI	CCNGG	3 cut(s)	167, 304, 930
SduI	GDGCHC	1 cut(s)	953
SfaNI	GCATC	3 cut(s)	255, 709, 883
SmiMI	CAYNNNNRTG	2 cut(s)	324, 564
SmlI	CTYRAG	2 cut(s)	209, 1013
SmoI	CTYRAG	2 cut(s)	209, 1013
Sse9I	AATT	3 cut(s)	453, 518, 530
SsiI	CCGC	5 cut(s)	204, 234, 362, 581, 858
SspI	AATATT	1 cut(s)	865
SspMI	CTAG	1 cut(s)	788
StyD4I	CCNGG	3 cut(s)	165, 302, 928
StyI	CCWWGG	2 cut(s)	142, 777
TaaI	ACNGT	5 cut(s)	82, 185, 334, 672, 889
TaiI	ACGT	3 cut(s)	387, 718, 1028
TaqI	TCGA	1 cut(s)	5
TasI	AATT	3 cut(s)	453, 518, 530
TatI	WGTACW	1 cut(s)	985
TauI	GCSGC	3 cut(s)	207, 236, 365
TfiI	GAWTC	1 cut(s)	545
Tru1I	TTAA	3 cut(s)	210, 528, 999
Tru9I	TTAA	3 cut(s)	210, 528, 999
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	2 cut(s)	835, 977
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	3 cut(s)	664, 699, 933
TspGWI	ACGGA	1 cut(s)	801
Vha464I	CTTAAG	1 cut(s)	209
XspI	CTAG	1 cut(s)	788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.