Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0007513

Physical Location & Seq

Genomic Coordinates Reverse (-)

34113812 .. 34119414

Gene Structure 5603 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002429

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGTCCAACGCTGTGGCGAATGGGCTGGCCGGCGCCGGAGGTGGCATTATTGCCCAGATTATCACTTATCCTCTGCAAACTGTCAATACGCGCCAACAAACCGAGAGAGTCGCCAAGCAATCCTTAGCAACATCCAAACGCCTTGGGACTCTTCTACAAATGCTCCATGTTATAAGAACCGACGGTTGGGGAGGACTCTACAGCGGTCTTAAGCCTTCTCTGCTCGGCACTGCCGCTTCACAGGGCATTTATTACTATTTTTATCAAGTATTTAAAAACAAGGCTGAGGCCATTGCTGCTGCCCGCAAAGTCAAAGGACGTGGGGATGGTACTATTGGGATGTTTTCTTGGCTTAGTGTGGCAGCCTTGGCTGGTTCCTTGAACGTGCTGCTGACAATTCCTATATGGGTGCTGGTGACTCGTATGCAGACACACACTCAAGCTGAGAGAAAAATCATGGAGGAAAGAAAGGACGCTCTGTTGAGGGAAGCTTCTGAAAATGGTTTGACAGGTTCTGAATTACGACACAAATTGGCTGAACTTGATTCAATAAAACCCCGTCCGTATGGAACTTTGCAAGCTGTCCACGAGGTTTATACTGAAGCCGGAATTACTGGATTTTGGAAAGGCATTGTTCCAACACTTATTATGGTTTGCAACCCAGCAATACAGTTTATGATTTATGAAGGCTCGTTAAAGCGTCTAAAGGCAAAACGTGCTACCACGACTGTCGCAACATATCCATTATTAGTTGTCAAGTCAAGATTGCAAGCAAAGCAGGAGATCGGTGGGAATGTTTCACTAAGATACTCAGGTACTTTTGATGCCATTTGGAAGATGATCCAGTATGAAGGATTGCCTAGCTTTTACAAAGGGATGAGTACAAAGATAGTACAGAGTGTTTTTGCAGCATCTGTACTTTTTATGGTTAAGGAGGAATTTGTCAAGGTTTACATGGTGCTGGAAGATAAATGCAATAAAGTTCTGTTTAGTTCAGCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

335

Amino Acids

36.78

Weight (kDa)

9.8

Isoelectric Point (pI)

35.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	3 - 93	2.4e-16	Mitochondrial carrier protein
Mito_carr	PF00153	188 - 235	6.3e-08	Mitochondrial carrier protein
Mito_carr	PF00153	240 - 318	7.6e-14	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007513)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26920 FvH4_5g26920 FvH4_5g26920 FvH4_5g26920 FvH4_5g26920 FvH4_5g26920
malus_domestica	MD00G1181800.v1.1
prunus_persica	Prupe.5G000200_v2.0.a1 Prupe.5G000200_v2.0.a1 Prupe.5G000200_v2.0.a1 Prupe.5G000200_v2.0.a1 Prupe.5G000200_v2.0.a1
pyrus_communis	pycom16g26390
rosa_chinensis	RchiOBHm_Chr7g0217961
rosa_laevigata	RLG00000002429
rosa_multiflora	Rmu_sc0012998.1_g000003 Rmu_sc0014729.1_g000002
rosa_roxburghii	Rroxscaffold_3G00241600
rosa_rugosa	Rorug07G0172400
rosa_samantha	Rh7AG314600 Rh7BG304900 Rh7CG332100 Rh7DG312800
rosa_wichuraiana	Rw0G017300 Rw7G026600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	173
AccB1I	GGYRCC	1 cut(s)	32
AccII	CGCG	1 cut(s)	91
AciI	CCGC	3 cut(s)	204, 234, 304
AclWI	GGATC	1 cut(s)	835
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	1 cut(s)	938
AcuI	CTGAAG	1 cut(s)	621
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	5 cut(s)	331, 817, 883, 894, 918
AfiI	CCNNNNNNNGG	1 cut(s)	186
AflII	CTTAAG	1 cut(s)	209
AgsI	TTSAA	2 cut(s)	382, 549
AjiI	CACGTC	1 cut(s)	320
AjuI	GAANNNNNNNTTGG	2 cut(s)	169, 201
AluBI	AGCT	4 cut(s)	443, 491, 581, 864
AluI	AGCT	4 cut(s)	443, 491, 581, 864
AlwI	GGATC	1 cut(s)	835
AlwNI	CAGNNNCTG	2 cut(s)	515, 914
AoxI	GGCC	2 cut(s)	27, 288
ApeKI	GCWGC	5 cut(s)	296, 299, 362, 388, 908
ApoI	RAATTY	1 cut(s)	938
AspLEI	GCGC	2 cut(s)	35, 93
AsuHPI	GGTGA	1 cut(s)	427
BaeI	ACNNNNGTAYC	2 cut(s)	799, 832
BanI	GGYRCC	1 cut(s)	32
BauI	CACGAG	1 cut(s)	587
BbvCI	CCTCAGC	1 cut(s)	285
BbvI	GCAGC	5 cut(s)	283, 286, 374, 375, 920
BccI	CCATC	1 cut(s)	320
BfaI	CTAG	1 cut(s)	861
BfmI	CTRYAG	1 cut(s)	199
BfoI	RGCGCY	1 cut(s)	36
BfrI	CTTAAG	1 cut(s)	209
BisI	GCNGC	6 cut(s)	234, 297, 300, 363, 389, 909
BlsI	GCNGC	6 cut(s)	235, 298, 301, 364, 390, 910
BmgBI	CACGTC	1 cut(s)	320
BmiI	GGNNCC	2 cut(s)	34, 376
BmsI	GCATC	2 cut(s)	814, 920
Bpu10I	CCTNAGC	2 cut(s)	124, 285
BpuEI	CTTGAG	1 cut(s)	423
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	142, 366
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse118I	RCCGGY	1 cut(s)	29
Bse1I	ACTGG	2 cut(s)	619, 844
Bse3DI	GCAATG	1 cut(s)	291
BseDI	CCNNGG	2 cut(s)	142, 366
BseGI	GGATG	4 cut(s)	131, 331, 345, 882
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	3 cut(s)	276, 435, 825
BseNI	ACTGG	2 cut(s)	619, 844
BseXI	GCAGC	5 cut(s)	283, 286, 374, 375, 920
BseYI	CCCAGC	1 cut(s)	661
Bsh1236I	CGCG	1 cut(s)	91
BshFI	GGCC	2 cut(s)	29, 290
BshNI	GGYRCC	1 cut(s)	32
BsiSI	CCGG	3 cut(s)	30, 36, 606
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	2 cut(s)	29, 290
Bsp143I	GATC	2 cut(s)	783, 840
BspACI	CCGC	3 cut(s)	204, 234, 304
BspANI	GGCC	2 cut(s)	29, 290
BspCNI	CTCAG	3 cut(s)	277, 436, 824
BspFNI	CGCG	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	34, 376
BspPI	GGATC	1 cut(s)	835
BspT107I	GGYRCC	1 cut(s)	32
BspTI	CTTAAG	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	291
BsrFI	RCCGGY	1 cut(s)	29
BsrI	ACTGG	2 cut(s)	619, 844
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	2 cut(s)	142, 366
BssMI	GATC	2 cut(s)	783, 840
BssNI	GRCGYC	1 cut(s)	33
BssSI	CACGAG	1 cut(s)	587
BssT1I	CCWWGG	2 cut(s)	142, 366
Bst2BI	CACGAG	1 cut(s)	587
Bst4CI	ACNGT	4 cut(s)	82, 185, 672, 730
Bst6I	CTCTTC	1 cut(s)	156
BstACI	GRCGYC	1 cut(s)	33
BstAFI	CTTAAG	1 cut(s)	209
BstAPI	GCANNNNNTGC	1 cut(s)	716
BstC8I	GCNNGC	5 cut(s)	27, 31, 304, 579, 771
BstDEI	CTNAG	6 cut(s)	124, 285, 353, 444, 803, 811
BstF5I	GGATG	4 cut(s)	131, 331, 345, 882
BstFNI	CGCG	1 cut(s)	91
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	2 cut(s)	35, 93
BstKTI	GATC	2 cut(s)	786, 843
BstMBI	GATC	2 cut(s)	783, 840
BstMWI	GCNNNNNNNGC	5 cut(s)	220, 296, 368, 716, 775
BstSFI	CTRYAG	1 cut(s)	199
BstUI	CGCG	1 cut(s)	91
BstV1I	GCAGC	5 cut(s)	283, 286, 374, 375, 920
BstXI	CCANNNNNNTGG	1 cut(s)	13
BsuRI	GGCC	2 cut(s)	29, 290
BtrI	CACGTC	1 cut(s)	320
BtsCI	GGATG	4 cut(s)	131, 331, 345, 882
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	5 cut(s)	27, 31, 304, 579, 771
CaiI	CAGNNNCTG	2 cut(s)	515, 914
CfoI	GCGC	2 cut(s)	35, 93
Cfr10I	RCCGGY	1 cut(s)	29
CseI	GACGC	2 cut(s)	482, 689
Csp6I	GTAC	5 cut(s)	330, 816, 882, 893, 917
CspCI	CAANNNNNGTGG	2 cut(s)	301, 336
CviAII	CATG	3 cut(s)	167, 457, 955
CviQI	GTAC	5 cut(s)	330, 816, 882, 893, 917
DdeI	CTNAG	6 cut(s)	124, 285, 353, 444, 803, 811
DinI	GGCGCC	1 cut(s)	34
DpnI	GATC	2 cut(s)	785, 842
DpnII	GATC	2 cut(s)	783, 840
DraI	TTTAAA	1 cut(s)	274
EaeI	YGGCCR	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco130I	CCWWGG	2 cut(s)	142, 366
Eco57I	CTGAAG	1 cut(s)	621
EcoT14I	CCWWGG	2 cut(s)	142, 366
EgeI	GGCGCC	1 cut(s)	34
EheI	GGCGCC	1 cut(s)	34
ErhI	CCWWGG	2 cut(s)	142, 366
FaeI	CATG	3 cut(s)	170, 460, 958
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	3 cut(s)	166, 456, 954
FauI	CCCGC	1 cut(s)	311
Fnu4HI	GCNGC	6 cut(s)	234, 297, 300, 363, 389, 909
FokI	GGATG	4 cut(s)	118, 338, 352, 889
Fsp4HI	GCNGC	6 cut(s)	234, 297, 300, 363, 389, 909
FspBI	CTAG	1 cut(s)	861
GlaI	GCGC	2 cut(s)	34, 92
GluI	GCNGC	6 cut(s)	234, 297, 300, 363, 389, 909
GsaI	CCCAGC	1 cut(s)	665
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	2 cut(s)	29, 290
HapII	CCGG	3 cut(s)	30, 36, 606
HgaI	GACGC	2 cut(s)	482, 689
HhaI	GCGC	2 cut(s)	35, 93
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	170, 460, 958
Hin6I	GCGC	2 cut(s)	33, 91
HinP1I	GCGC	2 cut(s)	33, 91
HindIII	AAGCTT	1 cut(s)	489
HinfI	GANTC	5 cut(s)	108, 148, 195, 418, 545
HpaII	CCGG	3 cut(s)	30, 36, 606
HphI	GGTGA	1 cut(s)	427
Hpy166II	GTNNAC	2 cut(s)	586, 952
Hpy188I	TCNGA	2 cut(s)	496, 517
Hpy188III	TCNNGA	1 cut(s)	762
Hpy8I	GTNNAC	2 cut(s)	586, 952
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	3 cut(s)	225, 680, 845
HpyCH4III	ACNGT	4 cut(s)	82, 185, 672, 730
HpyCH4IV	ACGT	3 cut(s)	319, 384, 715
HpyCH4V	TGCA	7 cut(s)	76, 427, 577, 657, 769, 908, 975
HpyF10VI	GCNNNNNNNGC	5 cut(s)	220, 296, 368, 716, 775
HpyF3I	CTNAG	6 cut(s)	124, 285, 353, 444, 803, 811
HpySE526I	ACGT	3 cut(s)	319, 384, 715
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	3 cut(s)	170, 460, 958
HspAI	GCGC	2 cut(s)	33, 91
KasI	GGCGCC	1 cut(s)	32
KroI	GCCGGC	1 cut(s)	29
KroNI	GCCGGC	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	783, 840
LmnI	GCTCC	1 cut(s)	168
Lsp1109I	GCAGC	5 cut(s)	283, 286, 374, 375, 920
LweI	GCATC	2 cut(s)	814, 920
MaeI	CTAG	1 cut(s)	861
MaeII	ACGT	3 cut(s)	319, 384, 715
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	2 cut(s)	785, 842
MboI	GATC	2 cut(s)	783, 840
MboII	GAAGA	3 cut(s)	143, 847, 977
MluCI	AATT	5 cut(s)	396, 518, 530, 609, 938
Mly113I	GGCGCC	1 cut(s)	33
MlyI	GAGTC	4 cut(s)	117, 142, 189, 412
MmeI	TCCRAC	2 cut(s)	30, 662
MnlI	CCTC	8 cut(s)	32, 81, 185, 280, 454, 477, 583, 928
MroNI	GCCGGC	1 cut(s)	29
MseI	TTAA	4 cut(s)	210, 273, 695, 930
MspA1I	CMGCKG	1 cut(s)	204
MspCI	CTTAAG	1 cut(s)	209
MspI	CCGG	3 cut(s)	30, 36, 606
MvnI	CGCG	1 cut(s)	91
MwoI	GCNNNNNNNGC	5 cut(s)	220, 296, 368, 716, 775
NaeI	GCCGGC	1 cut(s)	31
NarI	GGCGCC	1 cut(s)	33
NdeII	GATC	2 cut(s)	783, 840
NgoMIV	GCCGGC	1 cut(s)	29
NlaIII	CATG	3 cut(s)	170, 460, 958
NlaIV	GGNNCC	2 cut(s)	34, 376
NmeAIII	GCCGAG	1 cut(s)	204
NmuCI	GTSAC	1 cut(s)	415
PdiI	GCCGGC	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	545
PkrI	GCNGC	6 cut(s)	235, 298, 301, 364, 390, 910
PleI	GAGTC	4 cut(s)	116, 142, 189, 412
PluTI	GGCGCC	1 cut(s)	36
PpsI	GAGTC	4 cut(s)	116, 142, 189, 412
PsiI	TTATAA	1 cut(s)	173
PspFI	CCCAGC	1 cut(s)	661
PspN4I	GGNNCC	2 cut(s)	34, 376
PstNI	CAGNNNCTG	2 cut(s)	515, 914
RsaI	GTAC	5 cut(s)	331, 817, 883, 894, 918
RsaNI	GTAC	5 cut(s)	330, 816, 882, 893, 917
SaqAI	TTAA	4 cut(s)	210, 273, 695, 930
SatI	GCNGC	6 cut(s)	234, 297, 300, 363, 389, 909
Sau3AI	GATC	2 cut(s)	783, 840
SchI	GAGTC	4 cut(s)	117, 142, 189, 412
SfaNI	GCATC	2 cut(s)	814, 920
SfcI	CTRYAG	1 cut(s)	199
SfoI	GGCGCC	1 cut(s)	34
SmlI	CTYRAG	2 cut(s)	209, 438
SmoI	CTYRAG	2 cut(s)	209, 438
Sse9I	AATT	5 cut(s)	396, 518, 530, 609, 938
SsiI	CCGC	3 cut(s)	204, 234, 304
SspDI	GGCGCC	1 cut(s)	32
SspMI	CTAG	1 cut(s)	861
StyI	CCWWGG	2 cut(s)	142, 366
TaaI	ACNGT	4 cut(s)	82, 185, 672, 730
TaiI	ACGT	3 cut(s)	322, 387, 718
TasI	AATT	5 cut(s)	396, 518, 530, 609, 938
TatI	WGTACW	3 cut(s)	881, 892, 916
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	1 cut(s)	545
Tru1I	TTAA	4 cut(s)	210, 273, 695, 930
Tru9I	TTAA	4 cut(s)	210, 273, 695, 930
TscAI	CASTG	1 cut(s)	235
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	5 cut(s)	296, 299, 362, 388, 908
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	2 cut(s)	699, 864
TspGWI	ACGGA	1 cut(s)	552
TspRI	CASTG	1 cut(s)	235
Vha464I	CTTAAG	1 cut(s)	209
XapI	RAATTY	1 cut(s)	938
XspI	CTAG	1 cut(s)	861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.