Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0007513

Physical Location & Seq

Genomic Coordinates Forward (+)

35341193 .. 35347180

Gene Structure 5988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG314600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGTCGAACGCTGTGGCGAATGGGCTGGCCGGCGCCGGAGGTGGCATCATTGCCCAGATTATCACTTATCCTCTCCAAACTGTCAATACGCGCGAACAGACCGAGAGAGTCGCCAAGCAATCCTTAGCTACTTCCAAACGCCTTGGAACTCTTCTACAAATGCTCCATGTTATAAGAACCGACGGTTGGGGAGGACTCTACAGTGGCCTTAAGCCTTCTTTGCTTGGCACTGCCGCTTCACAGGGCATTTATTACTATTTTTATCAAGTGTTTAAAAACAAGGCTGAGGCCATCGCTGCTGCCCGCAAAGTCAAAGGACGTGGGGATGGTACTATTGGGATGTTTTCTTGGCTTAGTGTGGCAGCCTTGGCTGGTTCCTTGAACGTGCTGCTGACAATTCCTATATGGGTGCTGGTGACTCGTATGCAGACACATACTCAAGCTGAGAGAAAAATCATGGAGGAAAGAAAGGATGCTCTGTTGAGGGAAGCTTCTGAAAATGGTTTGACAGATTCTGAATTACAACACAAATTGGCTGAACTTGATTCAATAAAACCCCGTCCGTATGGAACTTTGCAAGCAGTCCACGAGGTTTATACTGAAGCCGGAATTACTGGATTTTGGAAAGGCATTGTTCCAACACTTATTATGGTTTGCAACCCAGCAATACAGTTTATGATTTATGAAGGCTCGTTAAAGCGTCTAAGGGCAAAACGTGCTGCCAGCAAGCAGGGAAGGAAAAATATAACTGCTTTAGAGGTTTTCTTTTTAGGGGCCTTGGCAAAACTAGGCGCGACTGTCACAACATATCCATTGTTAGTTGTCAAGTCAAGATTGCAAGCAAAGCAGGAGATCGGTGGGAATATTTCACTAAGATACTCAGGTACTTTTGATGCCATATTGAAGATGATCCAGTATGAAGGATTGCCTAGCTTTTACAAAGGGATGAGCACAAAGATAGTACAGAGCGTTTTTGCAGCATCTGTACTTTTTATGGTTAAGGAGGAATTTGTCAAGGTTTACATGGTGCTGGAAGATAAATGCAATAAAGTTCTTTTTAGTTCAGCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

357

Amino Acids

39.19

Weight (kDa)

9.77

Isoelectric Point (pI)

36.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	3 - 93	1.1e-15	Mitochondrial carrier protein
Mito_carr	PF00153	188 - 235	6.7e-08	Mitochondrial carrier protein
Mito_carr	PF00153	249 - 341	6e-17	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007513)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26920 FvH4_5g26920 FvH4_5g26920 FvH4_5g26920 FvH4_5g26920 FvH4_5g26920
malus_domestica	MD00G1181800.v1.1
prunus_persica	Prupe.5G000200_v2.0.a1 Prupe.5G000200_v2.0.a1 Prupe.5G000200_v2.0.a1 Prupe.5G000200_v2.0.a1 Prupe.5G000200_v2.0.a1
pyrus_communis	pycom16g26390
rosa_chinensis	RchiOBHm_Chr7g0217961
rosa_laevigata	RLG00000002429
rosa_multiflora	Rmu_sc0012998.1_g000003 Rmu_sc0014729.1_g000002
rosa_roxburghii	Rroxscaffold_3G00241600
rosa_rugosa	Rorug07G0172400
rosa_samantha	Rh7AG314600 Rh7BG304900 Rh7CG332100 Rh7DG312800
rosa_wichuraiana	Rw0G017300 Rw7G026600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	173
AccB1I	GGYRCC	1 cut(s)	32
AccII	CGCG	3 cut(s)	91, 93, 794
AciI	CCGC	2 cut(s)	234, 304
AclWI	GGATC	1 cut(s)	904
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	1 cut(s)	1007
AcuI	CTGAAG	1 cut(s)	621
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	4 cut(s)	331, 886, 963, 987
AfiI	CCNNNNNNNGG	1 cut(s)	186
AflII	CTTAAG	1 cut(s)	209
AgsI	TTSAA	3 cut(s)	382, 549, 904
AjiI	CACGTC	1 cut(s)	320
AjuI	GAANNNNNNNTTGG	2 cut(s)	169, 201
AluBI	AGCT	4 cut(s)	128, 443, 491, 933
AluI	AGCT	4 cut(s)	128, 443, 491, 933
Alw21I	GWGCWC	1 cut(s)	953
AlwI	GGATC	1 cut(s)	904
AlwNI	CAGNNNCTG	2 cut(s)	515, 983
AoxI	GGCC	4 cut(s)	27, 205, 288, 774
ApeKI	GCWGC	6 cut(s)	296, 299, 362, 388, 719, 977
ApoI	RAATTY	1 cut(s)	1007
AspLEI	GCGC	3 cut(s)	35, 93, 794
AspS9I	GGNCC	1 cut(s)	774
AsuHPI	GGTGA	1 cut(s)	427
BaeI	ACNNNNGTAYC	2 cut(s)	868, 901
BanI	GGYRCC	1 cut(s)	32
BauI	CACGAG	1 cut(s)	587
Bbv12I	GWGCWC	1 cut(s)	953
BbvCI	CCTCAGC	1 cut(s)	285
BbvI	GCAGC	6 cut(s)	283, 286, 374, 375, 706, 989
BccI	CCATC	2 cut(s)	299, 320
BfaI	CTAG	2 cut(s)	788, 930
BfmI	CTRYAG	1 cut(s)	199
BfoI	RGCGCY	1 cut(s)	36
BfrI	CTTAAG	1 cut(s)	209
BisI	GCNGC	7 cut(s)	234, 297, 300, 363, 389, 720, 978
BlsI	GCNGC	7 cut(s)	235, 298, 301, 364, 390, 721, 979
BmgBI	CACGTC	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	774
BmiI	GGNNCC	3 cut(s)	34, 376, 775
BmsI	GCATC	4 cut(s)	54, 463, 883, 989
Bpu10I	CCTNAGC	2 cut(s)	124, 285
BpuEI	CTTGAG	1 cut(s)	423
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	3 cut(s)	142, 366, 777
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse118I	RCCGGY	1 cut(s)	29
Bse1I	ACTGG	2 cut(s)	619, 913
Bse3DI	GCAATG	1 cut(s)	48
BseDI	CCNNGG	3 cut(s)	142, 366, 777
BseGI	GGATG	4 cut(s)	331, 345, 478, 951
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	3 cut(s)	276, 435, 894
BseNI	ACTGG	2 cut(s)	619, 913
BseXI	GCAGC	6 cut(s)	283, 286, 374, 375, 706, 989
BseYI	CCCAGC	1 cut(s)	661
Bsh1236I	CGCG	3 cut(s)	91, 93, 794
BshFI	GGCC	4 cut(s)	29, 207, 290, 776
BshNI	GGYRCC	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	953
BsiSI	CCGG	3 cut(s)	30, 36, 606
BslI	CCNNNNNNNGG	1 cut(s)	186
BsnI	GGCC	4 cut(s)	29, 207, 290, 776
Bsp1286I	GDGCHC	1 cut(s)	953
Bsp143I	GATC	2 cut(s)	852, 909
BspACI	CCGC	2 cut(s)	234, 304
BspANI	GGCC	4 cut(s)	29, 207, 290, 776
BspCNI	CTCAG	3 cut(s)	277, 436, 893
BspFNI	CGCG	3 cut(s)	91, 93, 794
BspLI	GGNNCC	3 cut(s)	34, 376, 775
BspPI	GGATC	1 cut(s)	904
BspT107I	GGYRCC	1 cut(s)	32
BspTI	CTTAAG	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	48
BsrFI	RCCGGY	1 cut(s)	29
BsrI	ACTGG	2 cut(s)	619, 913
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	3 cut(s)	142, 366, 777
BssMI	GATC	2 cut(s)	852, 909
BssNI	GRCGYC	1 cut(s)	33
BssSI	CACGAG	1 cut(s)	587
BssT1I	CCWWGG	3 cut(s)	142, 366, 777
Bst2BI	CACGAG	1 cut(s)	587
Bst4CI	ACNGT	5 cut(s)	82, 185, 203, 672, 799
Bst6I	CTCTTC	1 cut(s)	156
BstACI	GRCGYC	1 cut(s)	33
BstAFI	CTTAAG	1 cut(s)	209
BstAPI	GCANNNNNTGC	1 cut(s)	716
BstC8I	GCNNGC	7 cut(s)	27, 31, 304, 579, 724, 728, 840
BstDEI	CTNAG	7 cut(s)	124, 285, 353, 444, 704, 872, 880
BstF5I	GGATG	4 cut(s)	331, 345, 478, 951
BstFNI	CGCG	3 cut(s)	91, 93, 794
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	3 cut(s)	35, 93, 794
BstKTI	GATC	2 cut(s)	855, 912
BstMBI	GATC	2 cut(s)	852, 909
BstMWI	GCNNNNNNNGC	5 cut(s)	220, 296, 368, 716, 844
BstSFI	CTRYAG	1 cut(s)	199
BstUI	CGCG	3 cut(s)	91, 93, 794
BstV1I	GCAGC	6 cut(s)	283, 286, 374, 375, 706, 989
BsuRI	GGCC	4 cut(s)	29, 207, 290, 776
BtgZI	GCGATG	1 cut(s)	277
BtrI	CACGTC	1 cut(s)	320
BtsCI	GGATG	4 cut(s)	331, 345, 478, 951
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	2 cut(s)	208, 228
Cac8I	GCNNGC	7 cut(s)	27, 31, 304, 579, 724, 728, 840
CaiI	CAGNNNCTG	2 cut(s)	515, 983
CfoI	GCGC	3 cut(s)	35, 93, 794
Cfr10I	RCCGGY	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	774
CseI	GACGC	1 cut(s)	689
Csp6I	GTAC	4 cut(s)	330, 885, 962, 986
CspCI	CAANNNNNGTGG	2 cut(s)	301, 336
CviAII	CATG	3 cut(s)	167, 457, 1024
CviQI	GTAC	4 cut(s)	330, 885, 962, 986
DdeI	CTNAG	7 cut(s)	124, 285, 353, 444, 704, 872, 880
DinI	GGCGCC	1 cut(s)	34
DpnI	GATC	2 cut(s)	854, 911
DpnII	GATC	2 cut(s)	852, 909
DraI	TTTAAA	1 cut(s)	274
EaeI	YGGCCR	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco130I	CCWWGG	3 cut(s)	142, 366, 777
Eco57I	CTGAAG	1 cut(s)	621
EcoO109I	RGGNCCY	1 cut(s)	774
EcoT14I	CCWWGG	3 cut(s)	142, 366, 777
EgeI	GGCGCC	1 cut(s)	34
EheI	GGCGCC	1 cut(s)	34
ErhI	CCWWGG	3 cut(s)	142, 366, 777
FaeI	CATG	3 cut(s)	170, 460, 1027
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FatI	CATG	3 cut(s)	166, 456, 1023
FauI	CCCGC	1 cut(s)	311
Fnu4HI	GCNGC	7 cut(s)	234, 297, 300, 363, 389, 720, 978
FokI	GGATG	4 cut(s)	338, 352, 485, 958
Fsp4HI	GCNGC	7 cut(s)	234, 297, 300, 363, 389, 720, 978
FspBI	CTAG	2 cut(s)	788, 930
GlaI	GCGC	3 cut(s)	34, 92, 793
GluI	GCNGC	7 cut(s)	234, 297, 300, 363, 389, 720, 978
GsaI	CCCAGC	1 cut(s)	665
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	4 cut(s)	29, 207, 290, 776
HapII	CCGG	3 cut(s)	30, 36, 606
HgaI	GACGC	1 cut(s)	689
HhaI	GCGC	3 cut(s)	35, 93, 794
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	170, 460, 1027
Hin6I	GCGC	3 cut(s)	33, 91, 792
HinP1I	GCGC	3 cut(s)	33, 91, 792
HindIII	AAGCTT	1 cut(s)	489
HinfI	GANTC	5 cut(s)	108, 195, 418, 512, 545
HpaII	CCGG	3 cut(s)	30, 36, 606
HphI	GGTGA	1 cut(s)	427
Hpy166II	GTNNAC	2 cut(s)	586, 1021
Hpy188I	TCNGA	2 cut(s)	496, 517
Hpy188III	TCNNGA	1 cut(s)	831
Hpy8I	GTNNAC	2 cut(s)	586, 1021
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	4 cut(s)	225, 680, 729, 914
HpyCH4III	ACNGT	5 cut(s)	82, 185, 203, 672, 799
HpyCH4IV	ACGT	3 cut(s)	319, 384, 715
HpyCH4V	TGCA	6 cut(s)	427, 577, 657, 838, 977, 1044
HpyF10VI	GCNNNNNNNGC	5 cut(s)	220, 296, 368, 716, 844
HpyF3I	CTNAG	7 cut(s)	124, 285, 353, 444, 704, 872, 880
HpySE526I	ACGT	3 cut(s)	319, 384, 715
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	3 cut(s)	170, 460, 1027
HspAI	GCGC	3 cut(s)	33, 91, 792
KasI	GGCGCC	1 cut(s)	32
KroI	GCCGGC	1 cut(s)	29
KroNI	GCCGGC	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	852, 909
LmnI	GCTCC	1 cut(s)	168
Lsp1109I	GCAGC	6 cut(s)	283, 286, 374, 375, 706, 989
LweI	GCATC	4 cut(s)	54, 463, 883, 989
MaeI	CTAG	2 cut(s)	788, 930
MaeII	ACGT	3 cut(s)	319, 384, 715
MaeIII	GTNAC	2 cut(s)	415, 799
MalI	GATC	2 cut(s)	854, 911
MboI	GATC	2 cut(s)	852, 909
MboII	GAAGA	3 cut(s)	143, 916, 1046
MhlI	GDGCHC	1 cut(s)	953
MluCI	AATT	5 cut(s)	396, 518, 530, 609, 1007
Mly113I	GGCGCC	1 cut(s)	33
MlyI	GAGTC	3 cut(s)	117, 189, 412
MmeI	TCCRAC	1 cut(s)	662
MnlI	CCTC	9 cut(s)	32, 81, 185, 280, 454, 477, 583, 751, 997
MroNI	GCCGGC	1 cut(s)	29
MseI	TTAA	4 cut(s)	210, 273, 695, 999
MspCI	CTTAAG	1 cut(s)	209
MspI	CCGG	3 cut(s)	30, 36, 606
MvnI	CGCG	3 cut(s)	91, 93, 794
MwoI	GCNNNNNNNGC	5 cut(s)	220, 296, 368, 716, 844
NaeI	GCCGGC	1 cut(s)	31
NarI	GGCGCC	1 cut(s)	33
NdeII	GATC	2 cut(s)	852, 909
NgoMIV	GCCGGC	1 cut(s)	29
NlaIII	CATG	3 cut(s)	170, 460, 1027
NlaIV	GGNNCC	3 cut(s)	34, 376, 775
NmuCI	GTSAC	2 cut(s)	415, 799
PdiI	GCCGGC	1 cut(s)	31
PfeI	GAWTC	2 cut(s)	512, 545
PkrI	GCNGC	7 cut(s)	235, 298, 301, 364, 390, 721, 979
PleI	GAGTC	3 cut(s)	116, 189, 412
PluTI	GGCGCC	1 cut(s)	36
PpsI	GAGTC	3 cut(s)	116, 189, 412
PsiI	TTATAA	1 cut(s)	173
PspFI	CCCAGC	1 cut(s)	661
PspN4I	GGNNCC	3 cut(s)	34, 376, 775
PspPI	GGNCC	1 cut(s)	774
PstNI	CAGNNNCTG	2 cut(s)	515, 983
RsaI	GTAC	4 cut(s)	331, 886, 963, 987
RsaNI	GTAC	4 cut(s)	330, 885, 962, 986
SaqAI	TTAA	4 cut(s)	210, 273, 695, 999
SatI	GCNGC	7 cut(s)	234, 297, 300, 363, 389, 720, 978
Sau3AI	GATC	2 cut(s)	852, 909
Sau96I	GGNCC	1 cut(s)	774
SchI	GAGTC	3 cut(s)	117, 189, 412
SduI	GDGCHC	1 cut(s)	953
SfaNI	GCATC	4 cut(s)	54, 463, 883, 989
SfcI	CTRYAG	1 cut(s)	199
SfoI	GGCGCC	1 cut(s)	34
SmlI	CTYRAG	2 cut(s)	209, 438
SmoI	CTYRAG	2 cut(s)	209, 438
Sse9I	AATT	5 cut(s)	396, 518, 530, 609, 1007
SsiI	CCGC	2 cut(s)	234, 304
SspDI	GGCGCC	1 cut(s)	32
SspI	AATATT	1 cut(s)	865
SspMI	CTAG	2 cut(s)	788, 930
StyI	CCWWGG	3 cut(s)	142, 366, 777
TaaI	ACNGT	5 cut(s)	82, 185, 203, 672, 799
TaiI	ACGT	3 cut(s)	322, 387, 718
TaqI	TCGA	1 cut(s)	5
TaqII	GACCGA	1 cut(s)	116
TasI	AATT	5 cut(s)	396, 518, 530, 609, 1007
TatI	WGTACW	2 cut(s)	961, 985
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	2 cut(s)	512, 545
Tru1I	TTAA	4 cut(s)	210, 273, 695, 999
Tru9I	TTAA	4 cut(s)	210, 273, 695, 999
TscAI	CASTG	2 cut(s)	208, 235
TseFI	GTSAC	2 cut(s)	415, 799
TseI	GCWGC	6 cut(s)	296, 299, 362, 388, 719, 977
Tsp45I	GTSAC	2 cut(s)	415, 799
TspDTI	ATGAA	2 cut(s)	699, 933
TspGWI	ACGGA	1 cut(s)	552
TspRI	CASTG	2 cut(s)	208, 235
Vha464I	CTTAAG	1 cut(s)	209
XapI	RAATTY	1 cut(s)	1007
XspI	CTAG	2 cut(s)	788, 930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.