Rorug07G0172400

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0007513
Physical Location & Seq
Forward (+)
14121865 .. 14125875
4011 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0172400.1

Sequence Viewer

Length: 1059 bp
ATGGGGTCGATCGAGCAGACGATTCTGGTGACCGGCGGCGCGGGGTTCATCGGCAGCCACACGGCGGTGCAGCTACTCAACGAGGGCTTCAGGGTTGTCATCTTTGATAATCTTGATAACTCGTCTGTTGAAGCTGTTCATAGGGTCAGGGACTTGGTCGGGCCCAAGCTCTCTCAGAAGCTTCAATTTCACTTGGGTGATCTCAGAAATAAGGACGAGTTGGACGAGCTGTTTTCTCAAACTAAGTTTGATGCTGTGATCCATTTTGCTGGGCTGAAAGCTGTAGGGGAGAGTGTTGCGCACCCACGCCGCTATTTTGATAACAATTTGATTGGAACTCTGAATCTTTATAATATCATGGCAAAATACAATTGCAAAAAGATGGTTTTCTCTTCATCTGCAACTGTTTATGGCCAACCTGAAAAAATTCCTTGTGTTGAGGATTTTGACCTTGTAGCTCTGAATCCATATGGCCGTACCAAGCTTTTCCTCGAAGAAATTGCTCGAGATATTCACAGGGCAGAACCAGATTGGGGAATTATTCTTCTGAGGTATTTCAACCCCGTTGGGGCTCATGAGAGTGGTAAAATTGGTGAAGATCCTAAAGGCATACCAAACAATCTTATGCCTTACATACAGCAAGTAGCTGTGGGAAGATTGCCTGAGCTTAATGTTTATGGTCATGACTATCCCACCAGGGATGGTACTGCGATCCGAGACTACATCCATGTGATGGACTTAGCAGATGGCCATATTGCTGCTCTTCAGAAGCTTTTTACTACAGAGAATACAGGTTGTATTGCCTACAACCTGGGAACTGGACAAGGTACATCCGTGCTCGAAATGGTTGCTGCCTTTGAAAAGGCTTCTGGCAAGAAAATCCCTATCAAACTATGTCCGCGGAGACCAGGAGATGCTACTGCTGTTTATGCTTCAACTGAGAAAGCTAGAAGGGAACTTGGATGGAAGGCAAAATACGGAGTGGAGGAGATGTGCAGGGACCAATGGAATTGGGCAGTAAACAATCCATGGGGTTACGGTTGCCAATCCAAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

352

Amino Acids

39.18

Weight (kDa)

6.56

Isoelectric Point (pI)

30.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 6 - 123 7.4e-08 short chain dehydrogenase
RmlD_sub_bind PF04321 7 - 170 7.3e-09 RmlD substrate binding domain
KR PF08659 7 - 141 5.4e-06 KR domain
Epimerase PF01370 8 - 272 3.7e-56 NAD dependent epimerase/dehydratase family
Polysacc_synt_2 PF02719 8 - 133 1.9e-16 Polysaccharide biosynthesis protein
GDP_Man_Dehyd PF16363 9 - 334 3.8e-69 GDP-mannose 4,6 dehydratase
3Beta_HSD PF01073 9 - 139 2.7e-12 3-beta hydroxysteroid dehydrogenase/isomerase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 351
Acc16I TGCGCA 1 cut(s) 300
AccB7I CCANNNNNTGG 1 cut(s) 733
AccII CGCG 2 cut(s) 41, 901
AciI CCGC 6 cut(s) 36, 41, 65, 310, 899, 901
AclWI GGATC 3 cut(s) 253, 593, 706
AcoI YGGCCR 3 cut(s) 412, 472, 748
AcsI RAATTY 1 cut(s) 426
AcuI CTGAAG 2 cut(s) 73, 749
AfaI GTAC 3 cut(s) 478, 706, 829
AfiI CCNNNNNNNGG 4 cut(s) 64, 533, 568, 733
AgsI TTSAA 5 cut(s) 131, 185, 559, 860, 936
AjnI CCWGG 3 cut(s) 695, 810, 907
AleI CACNNNNGTG 2 cut(s) 65, 195
Alw21I GWGCWC 1 cut(s) 840
Alw26I GTCTC 2 cut(s) 711, 898
AlwI GGATC 3 cut(s) 253, 593, 706
Ama87I CYCGRG 1 cut(s) 504
AoxI GGCC 4 cut(s) 161, 412, 472, 748
ApaI GGGCCC 1 cut(s) 165
ApeKI GCWGC 4 cut(s) 54, 70, 758, 851
ApoI RAATTY 1 cut(s) 426
Asp700I GAANNNNTTC 2 cut(s) 135, 426
AspLEI GCGC 2 cut(s) 41, 301
AspS9I GGNCC 3 cut(s) 161, 162, 1000
AsuHPI GGTGA 3 cut(s) 40, 209, 605
AvaI CYCGRG 1 cut(s) 504
AvaII GGWCC 1 cut(s) 1000
BaeGI GKGCMC 1 cut(s) 165
BaeI ACNNNNGTAYC 2 cut(s) 819, 852
BalI TGGCCA 2 cut(s) 414, 750
BanII GRGCYC 2 cut(s) 165, 574
BarI GAAGNNNNNNTAC 2 cut(s) 959, 991
Bbv12I GWGCWC 1 cut(s) 840
BbvI GCAGC 4 cut(s) 66, 82, 745, 838
BccI CCATC 5 cut(s) 376, 695, 727, 740, 957
BceAI ACGGC 2 cut(s) 78, 459
BcgI CGANNNNNNTGC 4 cut(s) 482, 516, 830, 864
BciT130I CCWGG 3 cut(s) 697, 812, 909
BcoDI GTCTC 2 cut(s) 711, 898
BfaI CTAG 1 cut(s) 948
BfmI CTRYAG 2 cut(s) 282, 780
BisI GCNGC 6 cut(s) 37, 55, 71, 310, 759, 852
BlsI GCNGC 6 cut(s) 38, 56, 72, 311, 760, 853
Bme1390I CCNGG 3 cut(s) 697, 812, 909
Bme18I GGWCC 1 cut(s) 1000
BmeT110I CYCGRG 1 cut(s) 504
BmgT120I GGNCC 3 cut(s) 161, 162, 1000
BmiI GGNNCC 2 cut(s) 163, 1001
BmrFI CCNGG 3 cut(s) 697, 812, 909
BmsI GCATC 2 cut(s) 241, 904
Bpu10I CCTNAGC 1 cut(s) 663
BsaI GGTCTC 1 cut(s) 898
BsaJI CCNNGG 4 cut(s) 696, 811, 899, 1028
BsaXI ACNNNNNCTCC 2 cut(s) 977, 1007
Bsc4I CCNNNNNNNGG 4 cut(s) 64, 533, 568, 733
Bse118I RCCGGY 1 cut(s) 32
Bse1I ACTGG 1 cut(s) 823
BseBI CCWGG 3 cut(s) 697, 812, 909
BseDI CCNNGG 4 cut(s) 696, 811, 899, 1028
BseGI GGATG 4 cut(s) 706, 723, 830, 968
BseLI CCNNNNNNNGG 4 cut(s) 64, 533, 568, 733
BseMII CTCAG 5 cut(s) 188, 217, 539, 654, 930
BseNI ACTGG 1 cut(s) 823
BseRI GAGGAG 1 cut(s) 1001
BseSI GKGCMC 1 cut(s) 165
BseXI GCAGC 4 cut(s) 66, 82, 745, 838
BseYI CCCAGC 1 cut(s) 269
BsgI GTGCAG 2 cut(s) 89, 1015
Bsh1236I CGCG 2 cut(s) 41, 901
Bsh1285I CGRYCG 1 cut(s) 12
BshFI GGCC 4 cut(s) 163, 414, 474, 750
BsiEI CGRYCG 1 cut(s) 12
BsiHKAI GWGCWC 1 cut(s) 840
BsiHKCI CYCGRG 1 cut(s) 504
BsiSI CCGG 1 cut(s) 33
BslFI GGGAC 2 cut(s) 164, 1013
BslI CCNNNNNNNGG 4 cut(s) 64, 533, 568, 733
BsmAI GTCTC 2 cut(s) 711, 898
BsmFI GGGAC 2 cut(s) 164, 1013
BsnI GGCC 4 cut(s) 163, 414, 474, 750
Bso31I GGTCTC 1 cut(s) 898
BsoBI CYCGRG 1 cut(s) 504
Bsp120I GGGCCC 1 cut(s) 161
Bsp1286I GDGCHC 3 cut(s) 165, 574, 840
Bsp143I GATC 5 cut(s) 9, 199, 258, 598, 711
Bsp19I CCATGG 1 cut(s) 1028
BspACI CCGC 6 cut(s) 36, 41, 65, 310, 899, 901
BspANI GGCC 4 cut(s) 163, 414, 474, 750
BspCNI CTCAG 5 cut(s) 187, 216, 540, 655, 931
BspFNI CGCG 2 cut(s) 41, 901
BspHI TCATGA 2 cut(s) 574, 682
BspLI GGNNCC 2 cut(s) 163, 1001
BspPI GGATC 3 cut(s) 253, 593, 706
BspQI GCTCTTC 1 cut(s) 768
BspTNI GGTCTC 1 cut(s) 898
BsrFI RCCGGY 1 cut(s) 32
BsrI ACTGG 1 cut(s) 823
BssAI RCCGGY 1 cut(s) 32
BssECI CCNNGG 4 cut(s) 696, 811, 899, 1028
BssMI GATC 5 cut(s) 9, 199, 258, 598, 711
BssT1I CCWWGG 1 cut(s) 1028
Bst2UI CCWGG 3 cut(s) 697, 812, 909
Bst4CI ACNGT 2 cut(s) 406, 1040
Bst6I CTCTTC 2 cut(s) 397, 768
BstDEI CTNAG 7 cut(s) 174, 203, 243, 548, 663, 739, 939
BstDSI CCRYGG 2 cut(s) 899, 1028
BstEII GGTNACC 1 cut(s) 28
BstF5I GGATG 4 cut(s) 706, 723, 830, 968
BstFNI CGCG 2 cut(s) 41, 901
BstHHI GCGC 2 cut(s) 41, 301
BstKTI GATC 5 cut(s) 12, 202, 261, 601, 714
BstMAI GTCTC 2 cut(s) 711, 898
BstMBI GATC 5 cut(s) 9, 199, 258, 598, 711
BstMCI CGRYCG 1 cut(s) 12
BstMWI GCNNNNNNNGC 1 cut(s) 929
BstNI CCWGG 3 cut(s) 697, 812, 909
BstPI GGTNACC 1 cut(s) 28
BstSCI CCNGG 3 cut(s) 695, 810, 907
BstSFI CTRYAG 2 cut(s) 282, 780
BstSLI GKGCMC 1 cut(s) 165
BstUI CGCG 2 cut(s) 41, 901
BstV1I GCAGC 4 cut(s) 66, 82, 745, 838
BstX2I RGATCY 1 cut(s) 598
BstXI CCANNNNNNTGG 1 cut(s) 269
BstYI RGATCY 1 cut(s) 598
BsuRI GGCC 4 cut(s) 163, 414, 474, 750
BtgI CCRYGG 2 cut(s) 899, 1028
BtsCI GGATG 4 cut(s) 706, 723, 830, 968
CciI TCATGA 2 cut(s) 574, 682
CfoI GCGC 2 cut(s) 41, 301
Cfr10I RCCGGY 1 cut(s) 32
Cfr13I GGNCC 3 cut(s) 161, 162, 1000
Cfr42I CCGCGG 1 cut(s) 902
Csp6I GTAC 3 cut(s) 477, 705, 828
CviAII CATG 5 cut(s) 358, 575, 683, 728, 1029
CviQI GTAC 3 cut(s) 477, 705, 828
DdeI CTNAG 7 cut(s) 174, 203, 243, 548, 663, 739, 939
DpnI GATC 5 cut(s) 11, 201, 260, 600, 713
DpnII GATC 5 cut(s) 9, 199, 258, 598, 711
EaeI YGGCCR 3 cut(s) 412, 472, 748
Eam1104I CTCTTC 2 cut(s) 397, 768
EarI CTCTTC 2 cut(s) 397, 768
Eco130I CCWWGG 1 cut(s) 1028
Eco24I GRGCYC 2 cut(s) 165, 574
Eco31I GGTCTC 1 cut(s) 898
Eco47I GGWCC 1 cut(s) 1000
Eco57I CTGAAG 2 cut(s) 73, 749
Eco88I CYCGRG 1 cut(s) 504
Eco91I GGTNACC 1 cut(s) 28
EcoO65I GGTNACC 1 cut(s) 28
EcoRII CCWGG 3 cut(s) 695, 810, 907
EcoT14I CCWWGG 1 cut(s) 1028
EcoT38I GRGCYC 2 cut(s) 165, 574
ErhI CCWWGG 1 cut(s) 1028
FaeI CATG 5 cut(s) 361, 578, 686, 731, 1032
FaqI GGGAC 2 cut(s) 164, 1013
FatI CATG 5 cut(s) 357, 574, 682, 727, 1028
FauI CCCGC 1 cut(s) 34
FauNDI CATATG 1 cut(s) 469
Fnu4HI GCNGC 6 cut(s) 37, 55, 71, 310, 759, 852
FokI GGATG 4 cut(s) 710, 713, 817, 975
FriOI GRGCYC 2 cut(s) 165, 574
Fsp4HI GCNGC 6 cut(s) 37, 55, 71, 310, 759, 852
FspBI CTAG 1 cut(s) 948
FspI TGCGCA 1 cut(s) 300
GlaI GCGC 2 cut(s) 40, 300
GluI GCNGC 6 cut(s) 37, 55, 71, 310, 759, 852
GsaI CCCAGC 1 cut(s) 273
HaeIII GGCC 4 cut(s) 163, 414, 474, 750
HapII CCGG 1 cut(s) 33
HhaI GCGC 2 cut(s) 41, 301
Hin1II CATG 5 cut(s) 361, 578, 686, 731, 1032
Hin6I GCGC 2 cut(s) 39, 299
HinP1I GCGC 2 cut(s) 39, 299
HindIII AAGCTT 3 cut(s) 179, 482, 770
HinfI GANTC 3 cut(s) 22, 343, 463
HpaII CCGG 1 cut(s) 33
HphI GGTGA 3 cut(s) 40, 209, 605
Hpy166II GTNNAC 1 cut(s) 1021
Hpy188I TCNGA 7 cut(s) 177, 206, 342, 462, 549, 716, 768
Hpy188III TCNNGA 4 cut(s) 113, 506, 575, 683
Hpy8I GTNNAC 1 cut(s) 1021
HpyAV CCTTC 2 cut(s) 945, 961
HpyCH4III ACNGT 2 cut(s) 406, 1040
HpyCH4V TGCA 4 cut(s) 70, 375, 401, 996
HpyF10VI GCNNNNNNNGC 1 cut(s) 929
HpyF3I CTNAG 7 cut(s) 174, 203, 243, 548, 663, 739, 939
Hsp92II CATG 5 cut(s) 361, 578, 686, 731, 1032
HspAI GCGC 2 cut(s) 39, 299
KspI CCGCGG 1 cut(s) 902
Kzo9I GATC 5 cut(s) 9, 199, 258, 598, 711
LguI GCTCTTC 1 cut(s) 768
Lsp1109I GCAGC 4 cut(s) 66, 82, 745, 838
LweI GCATC 2 cut(s) 241, 904
MaeI CTAG 1 cut(s) 948
MaeIII GTNAC 2 cut(s) 28, 1034
MalI GATC 5 cut(s) 11, 201, 260, 600, 713
MboI GATC 5 cut(s) 9, 199, 258, 598, 711
MboII GAAGA 6 cut(s) 384, 506, 536, 608, 666, 755
MfeI CAATTG 1 cut(s) 370
MflI RGATCY 1 cut(s) 598
MhlI GDGCHC 3 cut(s) 165, 574, 840
MlsI TGGCCA 2 cut(s) 414, 750
MluCI AATT 8 cut(s) 185, 325, 370, 426, 498, 537, 588, 1009
MluNI TGGCCA 2 cut(s) 414, 750
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 5 cut(s) 76, 433, 500, 543, 979
Mox20I TGGCCA 2 cut(s) 414, 750
MroXI GAANNNNTTC 2 cut(s) 135, 426
MscI TGGCCA 2 cut(s) 414, 750
MseI TTAA 1 cut(s) 669
MslI CAYNNNNRTG 4 cut(s) 65, 195, 579, 728
Msp20I TGGCCA 2 cut(s) 414, 750
MspA1I CMGCKG 1 cut(s) 901
MspI CCGG 1 cut(s) 33
MspR9I CCNGG 3 cut(s) 697, 812, 909
MunI CAATTG 1 cut(s) 370
MvaI CCWGG 3 cut(s) 697, 812, 909
MvnI CGCG 2 cut(s) 41, 901
MwoI GCNNNNNNNGC 1 cut(s) 929
NcoI CCATGG 1 cut(s) 1028
NdeI CATATG 1 cut(s) 469
NdeII GATC 5 cut(s) 9, 199, 258, 598, 711
NlaIII CATG 5 cut(s) 361, 578, 686, 731, 1032
NlaIV GGNNCC 2 cut(s) 163, 1001
NmuCI GTSAC 1 cut(s) 28
NsbI TGCGCA 1 cut(s) 300
OliI CACNNNNGTG 2 cut(s) 65, 195
PaeR7I CTCGAG 1 cut(s) 504
PagI TCATGA 2 cut(s) 574, 682
PciSI GCTCTTC 1 cut(s) 768
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PdmI GAANNNNTTC 2 cut(s) 135, 426
PfeI GAWTC 3 cut(s) 22, 343, 463
PflFI GACNNNGTC 1 cut(s) 155
PflMI CCANNNNNTGG 1 cut(s) 733
PkrI GCNGC 6 cut(s) 38, 56, 72, 311, 760, 853
Ple19I CGATCG 1 cut(s) 12
PsiI TTATAA 1 cut(s) 351
Psp6I CCWGG 3 cut(s) 695, 810, 907
PspEI GGTNACC 1 cut(s) 28
PspFI CCCAGC 1 cut(s) 269
PspGI CCWGG 3 cut(s) 695, 810, 907
PspN4I GGNNCC 2 cut(s) 163, 1001
PspOMI GGGCCC 1 cut(s) 161
PspPI GGNCC 3 cut(s) 161, 162, 1000
PsuI RGATCY 1 cut(s) 598
PsyI GACNNNGTC 1 cut(s) 155
PvuI CGATCG 1 cut(s) 12
RsaI GTAC 3 cut(s) 478, 706, 829
RsaNI GTAC 3 cut(s) 477, 705, 828
RseI CAYNNNNRTG 4 cut(s) 65, 195, 579, 728
SacII CCGCGG 1 cut(s) 902
SapI GCTCTTC 1 cut(s) 768
SaqAI TTAA 1 cut(s) 669
SatI GCNGC 6 cut(s) 37, 55, 71, 310, 759, 852
Sau3AI GATC 5 cut(s) 9, 199, 258, 598, 711
Sau96I GGNCC 3 cut(s) 161, 162, 1000
ScrFI CCNGG 3 cut(s) 697, 812, 909
SduI GDGCHC 3 cut(s) 165, 574, 840
SfaNI GCATC 2 cut(s) 241, 904
SfcI CTRYAG 2 cut(s) 282, 780
Sfr274I CTCGAG 1 cut(s) 504
Sfr303I CCGCGG 1 cut(s) 902
SgrBI CCGCGG 1 cut(s) 902
SinI GGWCC 1 cut(s) 1000
SlaI CTCGAG 1 cut(s) 504
SmiMI CAYNNNNRTG 4 cut(s) 65, 195, 579, 728
SmlI CTYRAG 1 cut(s) 504
SmoI CTYRAG 1 cut(s) 504
Sse9I AATT 8 cut(s) 185, 325, 370, 426, 498, 537, 588, 1009
SsiI CCGC 6 cut(s) 36, 41, 65, 310, 899, 901
SspMI CTAG 1 cut(s) 948
StyD4I CCNGG 3 cut(s) 695, 810, 907
StyI CCWWGG 1 cut(s) 1028
TaaI ACNGT 2 cut(s) 406, 1040
TaqI TCGA 5 cut(s) 8, 12, 492, 505, 840
TasI AATT 8 cut(s) 185, 325, 370, 426, 498, 537, 588, 1009
TauI GCSGC 2 cut(s) 39, 312
TfiI GAWTC 3 cut(s) 22, 343, 463
Tru1I TTAA 1 cut(s) 669
Tru9I TTAA 1 cut(s) 669
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 4 cut(s) 54, 70, 758, 851
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 3 cut(s) 37, 128, 384
TspGWI ACGGA 2 cut(s) 823, 993
Tth111I GACNNNGTC 1 cut(s) 155
Van91I CCANNNNNTGG 1 cut(s) 733
VpaK11BI GGWCC 1 cut(s) 1000
XapI RAATTY 1 cut(s) 426
XhoI CTCGAG 1 cut(s) 504
XmnI GAANNNNTTC 2 cut(s) 135, 426
XspI CTAG 1 cut(s) 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.