Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0007513

Physical Location & Seq

Genomic Coordinates Reverse (-)

42823041 .. 42833884

Gene Structure 10844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1181800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGTCGAACGCAGTGGCGAATGGGCTGGCAGGAGCCGGAGGTGGTATCATTGCCCAGATTATCACTTATCCCCTCCAAACAGTCAATACGCGCCAACAAACGGAGAGAGTATCCAAACAATCATTTGCTAATTCCAAACGGCTTGGCACTCTTGTTCAAATACTCCAGGTCATAAGAAGCGACGGTTGGGGAGGATTATACAGCGGCCTTAGGCCTTCTCTGCTCGGGACTGCCGCTTCACAGGGAATTTATTACTATTTTTACCAGGTTTTCAAAAACAAGGCCGAGGCCATTGCAATTGCCCGTAGAGCAAAAGGACGCGGGGATGGTACTATTGGGATGTTTTCTTGGCTTCTTGTGGCGGCATTTGCCGGTTCCTTGAACGTGCTGTTGACAAATCCTGTATGGGTTCTCGTCACTCGTATGCAGACACATACTCAAGCAGAGAGAAAAATTATGGAGGAAAGAAAGGAAGCTCTCTTAAGGGAAGCTTCTAAAAACTGTTTGACAGGTTCAGCATTGCAAGATAAATTGGCTGAACTTGATTCAATAAAACCTCGTCCGTATGGAACTTTGCAAGCGGTGCACGAGGTTCATACTGAATCTGGAATTGCCGGATTTTGGAAGGGCATTATCCCAACACTTATTATGGTTTGCAACCCATCAATACAGTTCATGATTTATGAAAGCTCTTTAAAGCATCTGAAGACGAAACGTGCTGCCAGGAAGCAGGGATCAAAAAATATAACTGCTTTGGAGGTTTTTTCGTTAGGGGCGATTGCAAAACTAGGAGCAACCATCTCAACATACCCATTGTTAGTTGTCAAGTCAAGACTGCAAGCAAAGCAGGAGATCGGCAGGAATATTTCATTAAGATACTCAGGTACTTTCGATGCTATAACGAAGATGATCAAGTATGAAGGATTGCCTGGATTTTACAAAGGGATGAGCACAAAGATAGTACAGAGTGTTTTTGCAGCCTCGGTACTTTTTATGGTTAAGGAGGAATTCGTTAAGATTTACATGTTGCTGGCAGATAAGTGCAGTAGAGTGCTGCTTAGTTCAGCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

358

Amino Acids

39.17

Weight (kDa)

10.0

Isoelectric Point (pI)

40.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	3 - 93	3.2e-17	Mitochondrial carrier protein
Mito_carr	PF00153	115 - 238	3.7e-12	Mitochondrial carrier protein
Mito_carr	PF00153	250 - 341	6.7e-18	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007513)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26920 FvH4_5g26920 FvH4_5g26920 FvH4_5g26920 FvH4_5g26920 FvH4_5g26920
malus_domestica	MD00G1181800.v1.1
prunus_persica	Prupe.5G000200_v2.0.a1 Prupe.5G000200_v2.0.a1 Prupe.5G000200_v2.0.a1 Prupe.5G000200_v2.0.a1 Prupe.5G000200_v2.0.a1
pyrus_communis	pycom16g26390
rosa_chinensis	RchiOBHm_Chr7g0217961
rosa_laevigata	RLG00000002429
rosa_multiflora	Rmu_sc0012998.1_g000003 Rmu_sc0014729.1_g000002
rosa_roxburghii	Rroxscaffold_3G00241600
rosa_rugosa	Rorug07G0172400
rosa_samantha	Rh7AG314600 Rh7BG304900 Rh7CG332100 Rh7DG312800
rosa_wichuraiana	Rw0G017300 Rw7G026600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	91, 321
AciI	CCGC	5 cut(s)	204, 234, 321, 362, 581
AclWI	GGATC	1 cut(s)	742
AcsI	RAATTY	2 cut(s)	246, 1007
AcuI	CTGAAG	1 cut(s)	725
AfaI	GTAC	4 cut(s)	331, 886, 963, 987
AfiI	CCNNNNNNNGG	2 cut(s)	100, 621
AflII	CTTAAG	1 cut(s)	481
AflIII	ACRYGT	1 cut(s)	1023
AgsI	TTSAA	4 cut(s)	158, 274, 382, 549
AjnI	CCWGG	4 cut(s)	165, 264, 722, 928
AjuI	GAANNNNNNNTTGG	2 cut(s)	169, 201
AluBI	AGCT	3 cut(s)	476, 491, 690
AluI	AGCT	3 cut(s)	476, 491, 690
Alw21I	GWGCWC	2 cut(s)	588, 953
Alw44I	GTGCAC	1 cut(s)	584
AlwI	GGATC	1 cut(s)	742
Ama87I	CYCGRG	1 cut(s)	224
AoxI	GGCC	4 cut(s)	205, 212, 282, 288
ApaLI	GTGCAC	1 cut(s)	584
ApeKI	GCWGC	3 cut(s)	719, 977, 1054
ApoI	RAATTY	2 cut(s)	246, 1007
AspLEI	GCGC	1 cut(s)	93
AvaI	CYCGRG	1 cut(s)	224
AxyI	CCTNAGG	1 cut(s)	209
BaeGI	GKGCMC	1 cut(s)	588
BaeI	ACNNNNGTAYC	2 cut(s)	868, 901
BauI	CACGAG	1 cut(s)	587
BbsI	GAAGAC	1 cut(s)	713
Bbv12I	GWGCWC	2 cut(s)	588, 953
BbvI	GCAGC	3 cut(s)	706, 989, 1041
BccI	CCATC	3 cut(s)	320, 670, 806
BceAI	ACGGC	1 cut(s)	155
BcgI	CGANNNNNNTGC	2 cut(s)	275, 309
BciT130I	CCWGG	4 cut(s)	167, 266, 724, 930
BciVI	GTATCC	1 cut(s)	121
BclI	TGATCA	1 cut(s)	909
BfaI	CTAG	1 cut(s)	788
BfrI	CTTAAG	1 cut(s)	481
BfuI	GTATCC	1 cut(s)	121
BisI	GCNGC	6 cut(s)	205, 234, 363, 720, 978, 1055
BlsI	GCNGC	6 cut(s)	206, 235, 364, 721, 979, 1056
Bme1390I	CCNGG	4 cut(s)	167, 266, 724, 930
BmeT110I	CYCGRG	1 cut(s)	224
BmiI	GGNNCC	2 cut(s)	34, 376
BmrFI	CCNGG	4 cut(s)	167, 266, 724, 930
BmsI	GCATC	2 cut(s)	709, 883
BpiI	GAAGAC	1 cut(s)	713
BpmI	CTGGAG	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	423
BsaJI	CCNNGG	2 cut(s)	285, 981
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 621
Bse118I	RCCGGY	1 cut(s)	371
Bse21I	CCTNAGG	1 cut(s)	209
Bse3DI	GCAATG	3 cut(s)	48, 291, 518
BseBI	CCWGG	4 cut(s)	167, 266, 724, 930
BseDI	CCNNGG	2 cut(s)	285, 981
BseGI	GGATG	3 cut(s)	331, 345, 951
BseLI	CCNNNNNNNGG	2 cut(s)	100, 621
BseMI	GCAATG	3 cut(s)	48, 291, 518
BseMII	CTCAG	1 cut(s)	894
BseSI	GKGCMC	1 cut(s)	588
BseXI	GCAGC	3 cut(s)	706, 989, 1041
BsgI	GTGCAG	1 cut(s)	1063
Bsh1236I	CGCG	2 cut(s)	91, 321
BshFI	GGCC	4 cut(s)	207, 214, 284, 290
BsiHKAI	GWGCWC	2 cut(s)	588, 953
BsiHKCI	CYCGRG	1 cut(s)	224
BsiSI	CCGG	3 cut(s)	36, 372, 615
BslFI	GGGAC	1 cut(s)	241
BslI	CCNNNNNNNGG	2 cut(s)	100, 621
BsmFI	GGGAC	1 cut(s)	241
BsnI	GGCC	4 cut(s)	207, 214, 284, 290
BsoBI	CYCGRG	1 cut(s)	224
Bsp1286I	GDGCHC	2 cut(s)	588, 953
Bsp143I	GATC	3 cut(s)	734, 852, 909
BspACI	CCGC	5 cut(s)	204, 234, 321, 362, 581
BspANI	GGCC	4 cut(s)	207, 214, 284, 290
BspCNI	CTCAG	1 cut(s)	893
BspFNI	CGCG	2 cut(s)	91, 321
BspHI	TCATGA	1 cut(s)	675
BspLI	GGNNCC	2 cut(s)	34, 376
BspPI	GGATC	1 cut(s)	742
BspTI	CTTAAG	1 cut(s)	481
BsrDI	GCAATG	3 cut(s)	48, 291, 518
BsrFI	RCCGGY	1 cut(s)	371
BssAI	RCCGGY	1 cut(s)	371
BssECI	CCNNGG	2 cut(s)	285, 981
BssMI	GATC	3 cut(s)	734, 852, 909
BssSI	CACGAG	1 cut(s)	587
Bst2BI	CACGAG	1 cut(s)	587
Bst2UI	CCWGG	4 cut(s)	167, 266, 724, 930
Bst4CI	ACNGT	4 cut(s)	82, 185, 503, 672
BstAFI	CTTAAG	1 cut(s)	481
BstAPI	GCANNNNNTGC	1 cut(s)	583
BstC8I	GCNNGC	4 cut(s)	27, 579, 840, 1032
BstDEI	CTNAG	3 cut(s)	209, 880, 1058
BstF5I	GGATG	3 cut(s)	331, 345, 951
BstFNI	CGCG	2 cut(s)	91, 321
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	3 cut(s)	737, 855, 912
BstMBI	GATC	3 cut(s)	734, 852, 909
BstMWI	GCNNNNNNNGC	5 cut(s)	220, 308, 368, 583, 844
BstNI	CCWGG	4 cut(s)	167, 266, 724, 930
BstNSI	RCATGY	1 cut(s)	1027
BstSCI	CCNGG	4 cut(s)	165, 264, 722, 928
BstSLI	GKGCMC	1 cut(s)	588
BstUI	CGCG	2 cut(s)	91, 321
BstV1I	GCAGC	3 cut(s)	706, 989, 1041
BstV2I	GAAGAC	1 cut(s)	713
Bsu36I	CCTNAGG	1 cut(s)	209
BsuI	GTATCC	1 cut(s)	121
BsuRI	GGCC	4 cut(s)	207, 214, 284, 290
BtsCI	GGATG	3 cut(s)	331, 345, 951
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	4 cut(s)	27, 579, 840, 1032
CciI	TCATGA	1 cut(s)	675
CfoI	GCGC	1 cut(s)	93
Cfr10I	RCCGGY	1 cut(s)	371
CseI	GACGC	1 cut(s)	327
CsiI	ACCWGGT	1 cut(s)	264
Csp6I	GTAC	4 cut(s)	330, 885, 962, 986
CviAII	CATG	2 cut(s)	676, 1024
CviQI	GTAC	4 cut(s)	330, 885, 962, 986
DdeI	CTNAG	3 cut(s)	209, 880, 1058
DpnI	GATC	3 cut(s)	736, 854, 911
DpnII	GATC	3 cut(s)	734, 852, 909
DraI	TTTAAA	1 cut(s)	696
Eco147I	AGGCCT	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	725
Eco81I	CCTNAGG	1 cut(s)	209
Eco88I	CYCGRG	1 cut(s)	224
EcoRI	GAATTC	1 cut(s)	1007
EcoRII	CCWGG	4 cut(s)	165, 264, 722, 928
FaeI	CATG	2 cut(s)	679, 1027
FalI	AAGNNNNNCTT	2 cut(s)	475, 507
FaqI	GGGAC	1 cut(s)	241
FatI	CATG	2 cut(s)	675, 1023
FauI	CCCGC	1 cut(s)	314
FbaI	TGATCA	1 cut(s)	909
Fnu4HI	GCNGC	6 cut(s)	205, 234, 363, 720, 978, 1055
FokI	GGATG	3 cut(s)	338, 352, 958
Fsp4HI	GCNGC	6 cut(s)	205, 234, 363, 720, 978, 1055
FspBI	CTAG	1 cut(s)	788
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	6 cut(s)	205, 234, 363, 720, 978, 1055
GsuI	CTGGAG	1 cut(s)	149
HaeIII	GGCC	4 cut(s)	207, 214, 284, 290
HapII	CCGG	3 cut(s)	36, 372, 615
HgaI	GACGC	1 cut(s)	327
HhaI	GCGC	1 cut(s)	93
Hin1II	CATG	2 cut(s)	679, 1027
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HincII	GTYRAC	1 cut(s)	393
HindII	GTYRAC	1 cut(s)	393
HindIII	AAGCTT	1 cut(s)	489
HinfI	GANTC	2 cut(s)	545, 602
HpaII	CCGG	3 cut(s)	36, 372, 615
Hpy166II	GTNNAC	2 cut(s)	393, 586
Hpy188I	TCNGA	1 cut(s)	705
Hpy188III	TCNNGA	4 cut(s)	226, 606, 676, 831
Hpy8I	GTNNAC	2 cut(s)	393, 586
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	3 cut(s)	225, 619, 914
HpyCH4III	ACNGT	4 cut(s)	82, 185, 503, 672
HpyCH4IV	ACGT	2 cut(s)	384, 715
HpyF10VI	GCNNNNNNNGC	5 cut(s)	220, 308, 368, 583, 844
HpyF3I	CTNAG	3 cut(s)	209, 880, 1058
HpySE526I	ACGT	2 cut(s)	384, 715
Hsp92II	CATG	2 cut(s)	679, 1027
HspAI	GCGC	1 cut(s)	91
Ksp22I	TGATCA	1 cut(s)	909
Kzo9I	GATC	3 cut(s)	734, 852, 909
LmnI	GCTCC	2 cut(s)	32, 791
Lsp1109I	GCAGC	3 cut(s)	706, 989, 1041
LweI	GCATC	2 cut(s)	709, 883
MabI	ACCWGGT	1 cut(s)	264
MaeI	CTAG	1 cut(s)	788
MaeII	ACGT	2 cut(s)	384, 715
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	3 cut(s)	736, 854, 911
MboI	GATC	3 cut(s)	734, 852, 909
MboII	GAAGA	2 cut(s)	718, 916
MfeI	CAATTG	1 cut(s)	297
MhlI	GDGCHC	2 cut(s)	588, 953
MluCI	AATT	7 cut(s)	130, 246, 297, 453, 530, 609, 1007
MseI	TTAA	5 cut(s)	482, 695, 872, 999, 1014
MslI	CAYNNNNRTG	1 cut(s)	422
MspA1I	CMGCKG	1 cut(s)	204
MspCI	CTTAAG	1 cut(s)	481
MspI	CCGG	3 cut(s)	36, 372, 615
MspR9I	CCNGG	4 cut(s)	167, 266, 724, 930
MunI	CAATTG	1 cut(s)	297
MvaI	CCWGG	4 cut(s)	167, 266, 724, 930
MvnI	CGCG	2 cut(s)	91, 321
MwoI	GCNNNNNNNGC	5 cut(s)	220, 308, 368, 583, 844
NdeII	GATC	3 cut(s)	734, 852, 909
NlaIII	CATG	2 cut(s)	679, 1027
NlaIV	GGNNCC	2 cut(s)	34, 376
NmeAIII	GCCGAG	1 cut(s)	310
NmuCI	GTSAC	1 cut(s)	415
NspI	RCATGY	1 cut(s)	1027
PagI	TCATGA	1 cut(s)	675
PceI	AGGCCT	1 cut(s)	214
PciI	ACATGT	1 cut(s)	1023
PcsI	WCGNNNNNNNCGW	1 cut(s)	773
PfeI	GAWTC	2 cut(s)	545, 602
PkrI	GCNGC	6 cut(s)	206, 235, 364, 721, 979, 1056
PscI	ACATGT	1 cut(s)	1023
Psp6I	CCWGG	4 cut(s)	165, 264, 722, 928
PspGI	CCWGG	4 cut(s)	165, 264, 722, 928
PspN4I	GGNNCC	2 cut(s)	34, 376
RsaI	GTAC	4 cut(s)	331, 886, 963, 987
RsaNI	GTAC	4 cut(s)	330, 885, 962, 986
RseI	CAYNNNNRTG	1 cut(s)	422
SaqAI	TTAA	5 cut(s)	482, 695, 872, 999, 1014
SatI	GCNGC	6 cut(s)	205, 234, 363, 720, 978, 1055
Sau3AI	GATC	3 cut(s)	734, 852, 909
ScrFI	CCNGG	4 cut(s)	167, 266, 724, 930
SduI	GDGCHC	2 cut(s)	588, 953
SexAI	ACCWGGT	1 cut(s)	264
SfaNI	GCATC	2 cut(s)	709, 883
SmiMI	CAYNNNNRTG	1 cut(s)	422
SmlI	CTYRAG	2 cut(s)	438, 481
SmoI	CTYRAG	2 cut(s)	438, 481
Sse9I	AATT	7 cut(s)	130, 246, 297, 453, 530, 609, 1007
SseBI	AGGCCT	1 cut(s)	214
SsiI	CCGC	5 cut(s)	204, 234, 321, 362, 581
SspI	AATATT	1 cut(s)	865
SspMI	CTAG	1 cut(s)	788
StuI	AGGCCT	1 cut(s)	214
StyD4I	CCNGG	4 cut(s)	165, 264, 722, 928
TaaI	ACNGT	4 cut(s)	82, 185, 503, 672
TaiI	ACGT	2 cut(s)	387, 718
TaqI	TCGA	2 cut(s)	5, 891
TasI	AATT	7 cut(s)	130, 246, 297, 453, 530, 609, 1007
TatI	WGTACW	1 cut(s)	961
TauI	GCSGC	3 cut(s)	207, 236, 365
TfiI	GAWTC	2 cut(s)	545, 602
Tru1I	TTAA	5 cut(s)	482, 695, 872, 999, 1014
Tru9I	TTAA	5 cut(s)	482, 695, 872, 999, 1014
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	3 cut(s)	719, 977, 1054
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	5 cut(s)	584, 664, 699, 858, 933
TspGWI	ACGGA	2 cut(s)	116, 552
TspRI	CASTG	1 cut(s)	18
Vha464I	CTTAAG	1 cut(s)	481
VneI	GTGCAC	1 cut(s)	584
XapI	RAATTY	2 cut(s)	246, 1007
XceI	RCATGY	1 cut(s)	1027
XspI	CTAG	1 cut(s)	788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.