FvH4_5g29321

Protein tyrosine kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
20322309 .. 20326393
4085 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g29321.t1

Sequence Viewer

Length: 1572 bp
ATGAGAACTGAGAGGGAGGTGATGTCAAGAGAGGCTGTAATTGTGGCGCTGGACGCAAAAAGGAGAAGAGGAAGCGTGGAAATAGTGGAATGGGCCTTCAGCTACTTGGTTCGTCCAGGAGACATCCTCCTTGTCTTGGGAGTTCTGCAAGATGATCAACTCCCCAAGAAGCATCCCTGCTTTCCATTCTTCAATATTTTCTCCGCCACCAGCGCATGCGAGCGTTCAGAAATGGTGGACGATGAGGACCCGGATTCTGTAGTGATTAAAGAGAAATATGCGAAAAGGAGAGGAGAGTACCAGACTGGCCTCCAAACTATAAACTGCCTATGCCAAAGCAATGAGGTGAAGCTGCAAGTTAAATTTGCGGTGGGGTATTGTCCTGCGAGATTGGCAATTGAGGAAGCACGAAACCTTAATAGTCGGTGGATTTTACTGGACAGTCACTTTCGGAAGTCCAGACTTTTTCTTAGGGGACATGTAAGCTGCAACATTGCAGTAATGAAGGATAAATATTATGCTACGTTGATGCTATCAAATGATACCCCACCTCACATCTTTCCTAAGATTAATCCTGGAGAAAATTACAATTCAGAACATGGTATGGAAGTGCATAGTAACAGTTTAGTTCCTGATCAATTACGAATGTCAACTGCACCTGCACCTTATCGACAAAATCCTTGTTGCTACCCACTGTCTTGGAGAACTGGTTTCCCTCGAGTATTTTCACAGAAAGAACTTGAAGTGATAACAAATGGCTTTACCGATGACTATGTTTCTAGAGAAGAAAAGAGCATGAAAGTTTACGAAGGAATATTGCAAGACACAACTGTTTTAGTCAAGGCTTACGAAGAAGTGAATAAAGGCTTCTGGTCAGTGCTAAAGATCCTTTCTCGGGTATGTCACCGAAATATCTTGAACCTCGTAGGGTACTGCTACACTGGTGCTGCTGCGTACTTGGTCTTCGACTTTCCATGTTTGGGTAACATTCAAATGAACTTTCAAATTGAGGAATTGGCTAAGAATCTGGGATGGAGAGCAAGATGGTCTATTGCTCAAGAGATAGGTGGAAGCTTGCGCTATCTTCACGAGGAATGCGCTGATGCACCTATTATTCATAAATCTGTTTGTTCATGTAATGTTTCTCTTTCTCATGATTACTCTGCAATGCTTGGCAACCTCAAAGATGCTGAATGGCTTGATGGAGATGTTGCCAGATACTCAAATTTCGAAGAAGACGAGCGCCTTTTCGTAGACATACGTGGTTATGGAAAATTCATCCTGGAGCTTATTACAGGAAAAAGTGCATGTTGCTTTCCAAACCAAGGGAAGGATCAGTCCTTGATTGACTGGGCAATGCCACTACTAGAAAATGGTGAGCTTAAGGAACTAATGGACTGCCGAGTGTCAGAAACTGCTGGTGATGCTAGAATGGTACGTCACATGGCCCATGCTGCATTGCGCTGCCTAAATGTTGATTCAGATCATAAGCTTTCGATAAGCGAGGCCGTGGCAATTGTTCGAGGTGATGAACGTGTGGTATCCATTCAAGCACTGAAGATTTTTGAATGA

Protein Analysis

524

Amino Acids

59.52

Weight (kDa)

5.97

Isoelectric Point (pI)

47.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 267 - 387 4.6e-09 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 667
Acc36I ACCTGC 1 cut(s) 667
AccI GTMKAC 1 cut(s) 1254
AciI CCGC 2 cut(s) 204, 368
AclWI GGATC 2 cut(s) 880, 1341
AcsI RAATTY 3 cut(s) 362, 1225, 1274
AcuI CTGAAG 1 cut(s) 82
AfaI GTAC 4 cut(s) 299, 932, 956, 1437
AfiI CCNNNNNNNGG 5 cut(s) 136, 895, 980, 1325, 1330
AflII CTTAAG 1 cut(s) 1382
AflIII ACRYGT 2 cut(s) 478, 1534
AgsI TTSAA 7 cut(s) 193, 743, 919, 992, 1004, 1550, 1568
AjnI CCWGG 3 cut(s) 115, 574, 1281
AluBI AGCT 7 cut(s) 102, 352, 486, 1074, 1288, 1381, 1492
AluI AGCT 7 cut(s) 102, 352, 486, 1074, 1288, 1381, 1492
Alw26I GTCTC 1 cut(s) 114
AlwI GGATC 2 cut(s) 880, 1341
AlwNI CAGNNNCTG 1 cut(s) 1415
Ama87I CYCGRG 2 cut(s) 717, 894
AoxI GGCC 4 cut(s) 93, 307, 1446, 1506
ApeKI GCWGC 6 cut(s) 352, 486, 947, 950, 1454, 1464
ApoI RAATTY 3 cut(s) 362, 1225, 1274
AseI ATTAAT 1 cut(s) 570
AspLEI GCGC 6 cut(s) 49, 215, 1080, 1100, 1245, 1464
AspS9I GGNCC 3 cut(s) 93, 247, 1447
AsuC2I CCSGG 1 cut(s) 251
AsuHPI GGTGA 6 cut(s) 31, 358, 896, 1388, 1433, 1538
AsuII TTCGAA 1 cut(s) 1230
AvaI CYCGRG 2 cut(s) 717, 894
AvaII GGWCC 1 cut(s) 247
BarI GAAGNNNNNNTAC 2 cut(s) 947, 979
BauI CACGAG 1 cut(s) 1088
BbsI GAAGAC 2 cut(s) 955, 1242
BbvI GCAGC 6 cut(s) 339, 473, 934, 937, 1441, 1451
BccI CCATC 3 cut(s) 1026, 1038, 1196
BceAI ACGGC 1 cut(s) 1493
BciT130I CCWGG 3 cut(s) 117, 576, 1283
BciVI GTATCC 1 cut(s) 1552
BclI TGATCA 2 cut(s) 154, 634
BcnI CCSGG 1 cut(s) 251
BcoDI GTCTC 1 cut(s) 114
BfaI CTAG 3 cut(s) 780, 1367, 1428
BfmI CTRYAG 1 cut(s) 258
BfoI RGCGCY 2 cut(s) 50, 1246
BfrI CTTAAG 1 cut(s) 1382
BfuAI ACCTGC 1 cut(s) 667
BfuI GTATCC 1 cut(s) 1552
BisI GCNGC 6 cut(s) 353, 487, 948, 951, 1455, 1465
BlsI GCNGC 6 cut(s) 354, 488, 949, 952, 1456, 1466
Bme1390I CCNGG 4 cut(s) 117, 251, 576, 1283
Bme18I GGWCC 1 cut(s) 247
BmeT110I CYCGRG 2 cut(s) 717, 894
BmgT120I GGNCC 3 cut(s) 93, 247, 1447
BmiI GGNNCC 1 cut(s) 249
BmrFI CCNGG 4 cut(s) 117, 251, 576, 1283
BmrI ACTGGG 1 cut(s) 1360
BmsI GCATC 5 cut(s) 181, 519, 1093, 1177, 1414
BmuI ACTGGG 1 cut(s) 1360
BpiI GAAGAC 2 cut(s) 955, 1242
BplI GAGNNNNNCTC 2 cut(s) 111, 143
BpmI CTGGAG 2 cut(s) 597, 1304
Bpu14I TTCGAA 1 cut(s) 1230
BpuEI CTTGAG 1 cut(s) 1041
BpuMI CCSGG 1 cut(s) 251
BsaAI YACGTR 1 cut(s) 1262
BsaBI GATNNNNATC 1 cut(s) 1482
BsaJI CCNNGG 2 cut(s) 1324, 1509
BsaXI ACNNNNNCTCC 4 cut(s) 8, 38, 694, 724
Bsc4I CCNNNNNNNGG 5 cut(s) 136, 895, 980, 1325, 1330
Bse1I ACTGG 5 cut(s) 310, 441, 712, 946, 1355
Bse3DI GCAATG 5 cut(s) 346, 492, 1173, 1362, 1457
Bse8I GATNNNNATC 1 cut(s) 1482
BseBI CCWGG 3 cut(s) 117, 576, 1283
BseDI CCNNGG 2 cut(s) 1324, 1509
BseGI GGATG 4 cut(s) 123, 172, 1037, 1278
BseJI GATNNNNATC 1 cut(s) 1482
BseLI CCNNNNNNNGG 5 cut(s) 136, 895, 980, 1325, 1330
BseMI GCAATG 5 cut(s) 346, 492, 1173, 1362, 1457
BseNI ACTGG 5 cut(s) 310, 441, 712, 946, 1355
BseRI GAGGAG 1 cut(s) 306
BseXI GCAGC 6 cut(s) 339, 473, 934, 937, 1441, 1451
BsgI GTGCAG 2 cut(s) 639, 645
BshFI GGCC 4 cut(s) 95, 309, 1448, 1508
BsiHKCI CYCGRG 2 cut(s) 717, 894
BsiSI CCGG 1 cut(s) 251
BslFI GGGAC 1 cut(s) 489
BslI CCNNNNNNNGG 5 cut(s) 136, 895, 980, 1325, 1330
BsmAI GTCTC 1 cut(s) 114
BsmFI GGGAC 1 cut(s) 489
BsmI GAATGC 1 cut(s) 1100
BsnI GGCC 4 cut(s) 95, 309, 1448, 1508
BsoBI CYCGRG 2 cut(s) 717, 894
Bsp119I TTCGAA 1 cut(s) 1230
Bsp143I GATC 5 cut(s) 154, 634, 885, 1333, 1483
BspACI CCGC 2 cut(s) 204, 368
BspANI GGCC 4 cut(s) 95, 309, 1448, 1508
BspHI TCATGA 1 cut(s) 1153
BspLI GGNNCC 1 cut(s) 249
BspMI ACCTGC 1 cut(s) 667
BspPI GGATC 2 cut(s) 880, 1341
BspT104I TTCGAA 1 cut(s) 1230
BspTI CTTAAG 1 cut(s) 1382
BsrDI GCAATG 5 cut(s) 346, 492, 1173, 1362, 1457
BsrI ACTGG 5 cut(s) 310, 441, 712, 946, 1355
BssECI CCNNGG 2 cut(s) 1324, 1509
BssMI GATC 5 cut(s) 154, 634, 885, 1333, 1483
BssSI CACGAG 1 cut(s) 1088
BssT1I CCWWGG 1 cut(s) 1324
Bst2BI CACGAG 1 cut(s) 1088
Bst2UI CCWGG 3 cut(s) 117, 576, 1283
Bst4CI ACNGT 4 cut(s) 443, 623, 696, 832
Bst6I CTCTTC 1 cut(s) 61
BstAFI CTTAAG 1 cut(s) 1382
BstBAI YACGTR 1 cut(s) 1262
BstBI TTCGAA 1 cut(s) 1230
BstC8I GCNNGC 3 cut(s) 217, 221, 1076
BstDEI CTNAG 4 cut(s) 9, 470, 564, 1020
BstDSI CCRYGG 1 cut(s) 1509
BstF5I GGATG 4 cut(s) 123, 172, 1037, 1278
BstH2I RGCGCY 2 cut(s) 50, 1246
BstHHI GCGC 6 cut(s) 49, 215, 1080, 1100, 1245, 1464
BstKTI GATC 5 cut(s) 157, 637, 888, 1336, 1486
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 5 cut(s) 154, 634, 885, 1333, 1483
BstMWI GCNNNNNNNGC 5 cut(s) 53, 212, 392, 1424, 1454
BstNI CCWGG 3 cut(s) 117, 576, 1283
BstNSI RCATGY 3 cut(s) 219, 482, 1311
BstSCI CCNGG 4 cut(s) 115, 249, 574, 1281
BstSFI CTRYAG 1 cut(s) 258
BstV1I GCAGC 6 cut(s) 339, 473, 934, 937, 1441, 1451
BstV2I GAAGAC 2 cut(s) 955, 1242
BstX2I RGATCY 1 cut(s) 885
BstXI CCANNNNNNTGG 1 cut(s) 699
BstYI RGATCY 1 cut(s) 885
BsuI GTATCC 1 cut(s) 1552
BsuRI GGCC 4 cut(s) 95, 309, 1448, 1508
BtgI CCRYGG 1 cut(s) 1509
BtsCI GGATG 4 cut(s) 123, 172, 1037, 1278
BtsIMutI CAGTG 4 cut(s) 692, 882, 939, 1553
BveI ACCTGC 1 cut(s) 667
Cac8I GCNNGC 3 cut(s) 217, 221, 1076
CaiI CAGNNNCTG 1 cut(s) 1415
CciI TCATGA 1 cut(s) 1153
CfoI GCGC 6 cut(s) 49, 215, 1080, 1100, 1245, 1464
Cfr13I GGNCC 3 cut(s) 93, 247, 1447
CseI GACGC 1 cut(s) 62
Csp6I GTAC 4 cut(s) 298, 931, 955, 1436
CviQI GTAC 4 cut(s) 298, 931, 955, 1436
DdeI CTNAG 4 cut(s) 9, 470, 564, 1020
DpnI GATC 5 cut(s) 156, 636, 887, 1335, 1485
DpnII GATC 5 cut(s) 154, 634, 885, 1333, 1483
Eam1104I CTCTTC 1 cut(s) 61
EarI CTCTTC 1 cut(s) 61
EciI GGCGGA 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 1324
Eco47I GGWCC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 82
Eco88I CYCGRG 2 cut(s) 717, 894
EcoO109I RGGNCCY 1 cut(s) 247
EcoRII CCWGG 3 cut(s) 115, 574, 1281
EcoT14I CCWWGG 1 cut(s) 1324
ErhI CCWWGG 1 cut(s) 1324
FaqI GGGAC 1 cut(s) 489
FbaI TGATCA 2 cut(s) 154, 634
FblI GTMKAC 1 cut(s) 1254
Fnu4HI GCNGC 6 cut(s) 353, 487, 948, 951, 1455, 1465
FokI GGATG 4 cut(s) 110, 159, 1044, 1265
Fsp4HI GCNGC 6 cut(s) 353, 487, 948, 951, 1455, 1465
FspBI CTAG 3 cut(s) 780, 1367, 1428
GlaI GCGC 6 cut(s) 48, 214, 1079, 1099, 1244, 1463
GluI GCNGC 6 cut(s) 353, 487, 948, 951, 1455, 1465
GsuI CTGGAG 2 cut(s) 597, 1304
HaeII RGCGCY 2 cut(s) 50, 1246
HaeIII GGCC 4 cut(s) 95, 309, 1448, 1508
HapII CCGG 1 cut(s) 251
HgaI GACGC 1 cut(s) 62
HhaI GCGC 6 cut(s) 49, 215, 1080, 1100, 1245, 1464
Hin6I GCGC 6 cut(s) 47, 213, 1078, 1098, 1243, 1462
HinP1I GCGC 6 cut(s) 47, 213, 1078, 1098, 1243, 1462
HincII GTYRAC 1 cut(s) 651
HindII GTYRAC 1 cut(s) 651
HindIII AAGCTT 2 cut(s) 1072, 1490
HinfI GANTC 3 cut(s) 254, 1024, 1478
HpaII CCGG 1 cut(s) 251
HphI GGTGA 6 cut(s) 31, 358, 896, 1388, 1433, 1538
Hpy166II GTNNAC 4 cut(s) 238, 651, 805, 1255
Hpy188I TCNGA 5 cut(s) 229, 453, 595, 1411, 1483
Hpy188III TCNNGA 8 cut(s) 27, 459, 632, 780, 916, 1058, 1088, 1154
Hpy8I GTNNAC 4 cut(s) 238, 651, 805, 1255
HpyAV CCTTC 4 cut(s) 106, 499, 803, 1324
HpyCH4III ACNGT 4 cut(s) 443, 623, 696, 832
HpyCH4IV ACGT 4 cut(s) 524, 1261, 1438, 1534
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 212, 392, 1424, 1454
HpyF3I CTNAG 4 cut(s) 9, 470, 564, 1020
HpySE526I ACGT 4 cut(s) 524, 1261, 1438, 1534
HspAI GCGC 6 cut(s) 47, 213, 1078, 1098, 1243, 1462
Ksp22I TGATCA 2 cut(s) 154, 634
Kzo9I GATC 5 cut(s) 154, 634, 885, 1333, 1483
LmnI GCTCC 1 cut(s) 1285
Lsp1109I GCAGC 6 cut(s) 339, 473, 934, 937, 1441, 1451
LweI GCATC 5 cut(s) 181, 519, 1093, 1177, 1414
MaeI CTAG 3 cut(s) 780, 1367, 1428
MaeII ACGT 4 cut(s) 524, 1261, 1438, 1534
MaeIII GTNAC 5 cut(s) 443, 617, 902, 983, 1439
MalI GATC 5 cut(s) 156, 636, 887, 1335, 1485
MboI GATC 5 cut(s) 154, 634, 885, 1333, 1483
MboII GAAGA 9 cut(s) 78, 181, 797, 863, 955, 1076, 1244, 1247, 1570
MfeI CAATTG 2 cut(s) 396, 1515
MflI RGATCY 1 cut(s) 885
MseI TTAA 5 cut(s) 267, 360, 417, 570, 1383
MslI CAYNNNNRTG 1 cut(s) 992
MspCI CTTAAG 1 cut(s) 1382
MspI CCGG 1 cut(s) 251
MspR9I CCNGG 4 cut(s) 117, 251, 576, 1283
MunI CAATTG 2 cut(s) 396, 1515
Mva1269I GAATGC 1 cut(s) 1100
MvaI CCWGG 3 cut(s) 117, 576, 1283
MwoI GCNNNNNNNGC 5 cut(s) 53, 212, 392, 1424, 1454
NciI CCSGG 1 cut(s) 251
NdeII GATC 5 cut(s) 154, 634, 885, 1333, 1483
NlaIV GGNNCC 1 cut(s) 249
NmeAIII GCCGAG 1 cut(s) 1427
NmuCI GTSAC 3 cut(s) 443, 902, 1439
NspI RCATGY 3 cut(s) 219, 482, 1311
NspV TTCGAA 1 cut(s) 1230
PaeI GCATGC 1 cut(s) 219
PaeR7I CTCGAG 1 cut(s) 717
PagI TCATGA 1 cut(s) 1153
PaqCI CACCTGC 1 cut(s) 667
PciI ACATGT 1 cut(s) 478
PcsI WCGNNNNNNNCGW 1 cut(s) 1236
PctI GAATGC 1 cut(s) 1100
PfeI GAWTC 3 cut(s) 254, 1024, 1478
PfoI TCCNGGA 3 cut(s) 115, 574, 1281
PkrI GCNGC 6 cut(s) 354, 488, 949, 952, 1456, 1466
Ppu21I YACGTR 1 cut(s) 1262
PpuMI RGGWCCY 1 cut(s) 247
PscI ACATGT 1 cut(s) 478
PshBI ATTAAT 1 cut(s) 570
Psp5II RGGWCCY 1 cut(s) 247
Psp6I CCWGG 3 cut(s) 115, 574, 1281
PspGI CCWGG 3 cut(s) 115, 574, 1281
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 3 cut(s) 93, 247, 1447
PspPPI RGGWCCY 1 cut(s) 247
PspXI VCTCGAGB 1 cut(s) 717
PstNI CAGNNNCTG 1 cut(s) 1415
PsuI RGATCY 1 cut(s) 885
RsaI GTAC 4 cut(s) 299, 932, 956, 1437
RsaNI GTAC 4 cut(s) 298, 931, 955, 1436
RseI CAYNNNNRTG 1 cut(s) 992
SaqAI TTAA 5 cut(s) 267, 360, 417, 570, 1383
SatI GCNGC 6 cut(s) 353, 487, 948, 951, 1455, 1465
Sau3AI GATC 5 cut(s) 154, 634, 885, 1333, 1483
Sau96I GGNCC 3 cut(s) 93, 247, 1447
ScrFI CCNGG 4 cut(s) 117, 251, 576, 1283
SfaNI GCATC 5 cut(s) 181, 519, 1093, 1177, 1414
SfcI CTRYAG 1 cut(s) 258
Sfr274I CTCGAG 1 cut(s) 717
SfuI TTCGAA 1 cut(s) 1230
SinI GGWCC 1 cut(s) 247
SlaI CTCGAG 1 cut(s) 717
SmiMI CAYNNNNRTG 1 cut(s) 992
SmlI CTYRAG 3 cut(s) 717, 1056, 1382
SmoI CTYRAG 3 cut(s) 717, 1056, 1382
SphI GCATGC 1 cut(s) 219
SsiI CCGC 2 cut(s) 204, 368
SspI AATATT 3 cut(s) 196, 515, 816
SspMI CTAG 3 cut(s) 780, 1367, 1428
StyD4I CCNGG 4 cut(s) 115, 249, 574, 1281
StyI CCWWGG 1 cut(s) 1324
TaaI ACNGT 4 cut(s) 443, 623, 696, 832
TaiI ACGT 4 cut(s) 527, 1264, 1441, 1537
TaqI TCGA 6 cut(s) 670, 718, 966, 1230, 1496, 1522
TfiI GAWTC 3 cut(s) 254, 1024, 1478
Tru1I TTAA 5 cut(s) 267, 360, 417, 570, 1383
Tru9I TTAA 5 cut(s) 267, 360, 417, 570, 1383
TscAI CASTG 4 cut(s) 699, 882, 946, 1560
TseFI GTSAC 3 cut(s) 443, 902, 1439
TseI GCWGC 6 cut(s) 352, 486, 947, 950, 1454, 1464
Tsp45I GTSAC 3 cut(s) 443, 902, 1439
TspDTI ATGAA 7 cut(s) 518, 812, 1010, 1106, 1122, 1267, 1545
TspRI CASTG 4 cut(s) 699, 882, 946, 1560
Vha464I CTTAAG 1 cut(s) 1382
VpaK11BI GGWCC 1 cut(s) 247
VspI ATTAAT 1 cut(s) 570
XapI RAATTY 3 cut(s) 362, 1225, 1274
XbaI TCTAGA 1 cut(s) 779
XceI RCATGY 3 cut(s) 219, 482, 1311
XhoI CTCGAG 1 cut(s) 717
XmiI GTMKAC 1 cut(s) 1254
XspI CTAG 3 cut(s) 780, 1367, 1428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.