Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0008141

Physical Location & Seq

Genomic Coordinates Forward (+)

40843944 .. 40845551

Gene Structure 1608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G029420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGCTTTCCAGATTCACAACTGCTGAATGGCTTGCTGAATGTGTTCCCCATGATGAAGATTTGATTGCCAGATGCTCAAATTTCGAAGAAGACGAGAGCCTTTTTGTAGATGTACGCGGATATGGGAAATTCCTCCTGGAGCTTATTACAGGAAAAAGTGCATGTAGCTTTCCAAACCAAGGGAATGATCAGTCCATGATTGACTGGGCATTGCCACTTCTAGAAAATGGTGCGCTTAGGAACCTAATGGACTGCCGAGTGACAGAAAGTGCTGGTGACTGTAGATTGGTACGTCAGATGGCCCATGCTGCATTGCGCTGCCTAAATGTTGATTCAGATCACAAACTTTCAATAAGCGAGGCCTTGGCCATTGTTCGAGGTGATGAACTTGTGGTTTCCGTTCAAGCCCTGAAGATTTTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

141

Amino Acids

15.72

Weight (kDa)

4.67

Isoelectric Point (pI)

29.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008141)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29321
malus_domestica	MD08G1231700.v1.1
prunus_persica	Prupe.1G570300_v2.0.a1 Prupe.1G570300_v2.0.a1 Prupe.1G570300_v2.0.a1 Prupe.1G570300_v2.0.a1 Prupe.1G570300_v2.0.a1 Prupe.1G570300_v2.0.a1 Prupe.1G570300_v2.0.a1 Prupe.1G570300_v2.0.a1 Prupe.1G570300_v2.0.a1
pyrus_communis	pycom08g20150 pycom15g37640
rosa_chinensis	RchiOBHm_Chr7g0222191
rosa_laevigata	RLG00000002085
rosa_multiflora	Rmu_ssc0000240.1_g000016
rosa_roxburghii	Rroxscaffold_3G00237320
rosa_rugosa	Rorug07G0206500
rosa_samantha	Rh7AG347300 Rh7BG338000 Rh7CG364700 Rh7DG345300
rosa_wichuraiana	Rw7G029420 Rw7G029880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	117
AciI	CCGC	1 cut(s)	117
AcoI	YGGCCR	1 cut(s)	366
AcsI	RAATTY	2 cut(s)	79, 128
AfaI	GTAC	2 cut(s)	114, 291
AfiI	CCNNNNNNNGG	1 cut(s)	179
AgsI	TTSAA	3 cut(s)	351, 404, 422
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	2 cut(s)	142, 168
AluI	AGCT	2 cut(s)	142, 168
AoxI	GGCC	3 cut(s)	300, 360, 366
ApeKI	GCWGC	2 cut(s)	308, 318
ApoI	RAATTY	2 cut(s)	79, 128
Asp700I	GAANNNNTTC	1 cut(s)	42
AspLEI	GCGC	2 cut(s)	235, 318
AspS9I	GGNCC	1 cut(s)	301
AsuHPI	GGTGA	2 cut(s)	287, 392
AsuII	TTCGAA	1 cut(s)	84
BalI	TGGCCA	1 cut(s)	368
BbsI	GAAGAC	1 cut(s)	96
BbvI	GCAGC	2 cut(s)	295, 305
BccI	CCATC	1 cut(s)	292
BciT130I	CCWGG	1 cut(s)	137
BclI	TGATCA	1 cut(s)	187
BfaI	CTAG	1 cut(s)	221
BfmI	CTRYAG	1 cut(s)	280
BisI	GCNGC	2 cut(s)	309, 319
BlsI	GCNGC	2 cut(s)	310, 320
Bme1390I	CCNGG	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	301
BmiI	GGNNCC	1 cut(s)	242
BmrFI	CCNGG	1 cut(s)	137
BmrI	ACTGGG	1 cut(s)	214
BmsI	GCATC	1 cut(s)	62
BmuI	ACTGGG	1 cut(s)	214
BpiI	GAAGAC	1 cut(s)	96
BpmI	CTGGAG	1 cut(s)	158
Bpu10I	CCTNAGC	1 cut(s)	236
Bpu14I	TTCGAA	1 cut(s)	84
BsaBI	GATNNNNATC	1 cut(s)	336
BsaJI	CCNNGG	2 cut(s)	178, 363
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse1I	ACTGG	1 cut(s)	209
Bse3DI	GCAATG	2 cut(s)	209, 311
Bse8I	GATNNNNATC	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	137
BseDI	CCNNGG	2 cut(s)	178, 363
BseJI	GATNNNNATC	1 cut(s)	336
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMI	GCAATG	2 cut(s)	209, 311
BseNI	ACTGG	1 cut(s)	209
BseXI	GCAGC	2 cut(s)	295, 305
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	3 cut(s)	302, 362, 368
BslI	CCNNNNNNNGG	1 cut(s)	179
BsnI	GGCC	3 cut(s)	302, 362, 368
Bsp119I	TTCGAA	1 cut(s)	84
Bsp143I	GATC	2 cut(s)	187, 337
BspACI	CCGC	1 cut(s)	117
BspANI	GGCC	3 cut(s)	302, 362, 368
BspFNI	CGCG	1 cut(s)	117
BspLI	GGNNCC	1 cut(s)	242
BspT104I	TTCGAA	1 cut(s)	84
BsrDI	GCAATG	2 cut(s)	209, 311
BsrI	ACTGG	1 cut(s)	209
BssECI	CCNNGG	2 cut(s)	178, 363
BssMI	GATC	2 cut(s)	187, 337
BssT1I	CCWWGG	2 cut(s)	178, 363
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	281
BstBI	TTCGAA	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	1 cut(s)	236
BstFNI	CGCG	1 cut(s)	117
BstHHI	GCGC	2 cut(s)	235, 318
BstKTI	GATC	2 cut(s)	190, 340
BstMBI	GATC	2 cut(s)	187, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstNI	CCWGG	1 cut(s)	137
BstNSI	RCATGY	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	135
BstSFI	CTRYAG	1 cut(s)	280
BstUI	CGCG	1 cut(s)	117
BstV1I	GCAGC	2 cut(s)	295, 305
BstV2I	GAAGAC	1 cut(s)	96
BsuRI	GGCC	3 cut(s)	302, 362, 368
Cac8I	GCNNGC	1 cut(s)	33
CfoI	GCGC	2 cut(s)	235, 318
Cfr13I	GGNCC	1 cut(s)	301
Csp6I	GTAC	2 cut(s)	113, 290
CviAII	CATG	4 cut(s)	50, 162, 196, 305
CviJI	RGCY	8 cut(s)	31, 99, 142, 168, 302, 362, 368, 407
CviKI_1	RGCY	8 cut(s)	31, 99, 142, 168, 302, 362, 368, 407
CviQI	GTAC	2 cut(s)	113, 290
DdeI	CTNAG	1 cut(s)	236
DpnI	GATC	2 cut(s)	189, 339
DpnII	GATC	2 cut(s)	187, 337
EaeI	YGGCCR	1 cut(s)	366
Eco130I	CCWWGG	2 cut(s)	178, 363
Eco147I	AGGCCT	1 cut(s)	362
EcoRII	CCWGG	1 cut(s)	135
EcoT14I	CCWWGG	2 cut(s)	178, 363
ErhI	CCWWGG	2 cut(s)	178, 363
FaeI	CATG	4 cut(s)	53, 165, 199, 308
FaiI	YATR	5 cut(s)	51, 123, 163, 197, 306
FatI	CATG	4 cut(s)	49, 161, 195, 304
FbaI	TGATCA	1 cut(s)	187
Fnu4HI	GCNGC	2 cut(s)	309, 319
Fsp4HI	GCNGC	2 cut(s)	309, 319
FspBI	CTAG	1 cut(s)	221
GlaI	GCGC	2 cut(s)	234, 317
GluI	GCNGC	2 cut(s)	309, 319
GsuI	CTGGAG	1 cut(s)	158
HaeIII	GGCC	3 cut(s)	302, 362, 368
HhaI	GCGC	2 cut(s)	235, 318
Hin1II	CATG	4 cut(s)	53, 165, 199, 308
Hin6I	GCGC	2 cut(s)	233, 316
HinP1I	GCGC	2 cut(s)	233, 316
HinfI	GANTC	2 cut(s)	12, 332
HphI	GGTGA	2 cut(s)	287, 392
Hpy188I	TCNGA	2 cut(s)	297, 337
Hpy188III	TCNNGA	2 cut(s)	9, 221
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	2 cut(s)	161, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	1 cut(s)	236
HpySE526I	ACGT	1 cut(s)	292
Hsp92II	CATG	4 cut(s)	53, 165, 199, 308
HspAI	GCGC	2 cut(s)	233, 316
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	187, 337
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	8 cut(s)	22, 82, 122, 135, 149, 190, 258, 422
Lsp1109I	GCAGC	2 cut(s)	295, 305
LweI	GCATC	1 cut(s)	62
MaeI	CTAG	1 cut(s)	221
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	2 cut(s)	259, 275
MalI	GATC	2 cut(s)	189, 339
MboI	GATC	2 cut(s)	187, 337
MboII	GAAGA	4 cut(s)	68, 98, 101, 424
MlsI	TGGCCA	1 cut(s)	368
MluCI	AATT	2 cut(s)	79, 128
MluNI	TGGCCA	1 cut(s)	368
MnlI	CCTC	3 cut(s)	143, 352, 371
Mox20I	TGGCCA	1 cut(s)	368
MroXI	GAANNNNTTC	1 cut(s)	42
MscI	TGGCCA	1 cut(s)	368
Msp20I	TGGCCA	1 cut(s)	368
MspR9I	CCNGG	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	137
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	1 cut(s)	308
NdeII	GATC	2 cut(s)	187, 337
NlaIII	CATG	4 cut(s)	53, 165, 199, 308
NlaIV	GGNNCC	1 cut(s)	242
NmeAIII	GCCGAG	1 cut(s)	281
NmuCI	GTSAC	2 cut(s)	259, 275
NspI	RCATGY	1 cut(s)	165
NspV	TTCGAA	1 cut(s)	84
PceI	AGGCCT	1 cut(s)	362
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PdmI	GAANNNNTTC	1 cut(s)	42
PfeI	GAWTC	2 cut(s)	12, 332
PfoI	TCCNGGA	1 cut(s)	135
PkrI	GCNGC	2 cut(s)	310, 320
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	1 cut(s)	242
PspPI	GGNCC	1 cut(s)	301
RsaI	GTAC	2 cut(s)	114, 291
RsaNI	GTAC	2 cut(s)	113, 290
SatI	GCNGC	2 cut(s)	309, 319
Sau3AI	GATC	2 cut(s)	187, 337
Sau96I	GGNCC	1 cut(s)	301
ScrFI	CCNGG	1 cut(s)	137
SetI	ASST	5 cut(s)	144, 170, 246, 295, 382
SfaNI	GCATC	1 cut(s)	62
SfcI	CTRYAG	1 cut(s)	280
SfuI	TTCGAA	1 cut(s)	84
Sse9I	AATT	2 cut(s)	79, 128
SseBI	AGGCCT	1 cut(s)	362
SsiI	CCGC	1 cut(s)	117
SspMI	CTAG	1 cut(s)	221
StuI	AGGCCT	1 cut(s)	362
StyD4I	CCNGG	1 cut(s)	135
StyI	CCWWGG	2 cut(s)	178, 363
TaaI	ACNGT	1 cut(s)	281
TaiI	ACGT	1 cut(s)	295
TaqI	TCGA	2 cut(s)	84, 376
TasI	AATT	2 cut(s)	79, 128
TfiI	GAWTC	2 cut(s)	12, 332
TseFI	GTSAC	2 cut(s)	259, 275
TseI	GCWGC	2 cut(s)	308, 318
Tsp45I	GTSAC	2 cut(s)	259, 275
TspDTI	ATGAA	2 cut(s)	69, 399
TspGWI	ACGGA	1 cut(s)	388
XapI	RAATTY	2 cut(s)	79, 128
XbaI	TCTAGA	1 cut(s)	220
XceI	RCATGY	1 cut(s)	165
XmnI	GAANNNNTTC	1 cut(s)	42
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.