Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000240.1

Orthogroup ID

OG0008141

Physical Location & Seq

Genomic Coordinates Forward (+)

49419 .. 52788

Gene Structure 3370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000240.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

atgaagggtaaagatttcgctaccttgatgctgtcagaagctaccccacctgacatctttcctggaaattctgaagaaagttacaattcagctcctactgacaatcctatggaagtgcctactaaaagtataagtcctgatcaattaagaaagtcacatgcacccgcacctcatcgtcaaaatccttgttgctacccaatgtcttggagaactggcttccctcgagtattttcgcacaatgaaattgaagtgataacaaatggctttgccgatgactatatgtcaaaagacattgagggcttgaaagtttacctaggaatattgcaagacacaactgttttagtcaagtcttatgaagaagtaaataaatgcttccggtcgatgctagtgatcctttctcgggtatgtcaccgcaatatcatgagccttgtagggtactgctacactggtgctgctgcatacttgatctttgactttccatgtttgggtaacatggaatacaacttgcgaattgaggaattggctcagaagctggggtggaaagcaaggtggtatattgctctagagataggcggaagcttgcgctatcttcatgaggaatgtgctgatggttctattgttcacaaatctgtttgttcatgtagtgttgcactttctcatgattactctgcaatgctttccggattcacaactgctgaatggcttgctgaatgtgttccccatgatgaagatttgattgccagatgctcaaaattcgaagaagacgagagcctttttgtagatgtacgcggatatgggaaattcctcctggagcttattacaggaaaaagtgcatgtagctttccaaaccaagggaatgatcagtccatgattgactgggcattgccacttctagaaaatggtgcgcttaggaacctaatggactgccgagtgacagaaagtgctggtgactgtagattggtacgtcagatggcccatgctgcattgcgctgcctaaatgttgattcagatcacaaactttcaataagcgaggccttggccattgttcgaggtgatgaacttgtggtatccgttcaagccctgaagatttttgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

365

Amino Acids

40.81

Weight (kDa)

5.16

Isoelectric Point (pI)

46.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008141)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29321
malus_domestica	MD08G1231700.v1.1
prunus_persica	Prupe.1G570300_v2.0.a1 Prupe.1G570300_v2.0.a1 Prupe.1G570300_v2.0.a1 Prupe.1G570300_v2.0.a1 Prupe.1G570300_v2.0.a1 Prupe.1G570300_v2.0.a1 Prupe.1G570300_v2.0.a1 Prupe.1G570300_v2.0.a1 Prupe.1G570300_v2.0.a1
pyrus_communis	pycom08g20150 pycom15g37640
rosa_chinensis	RchiOBHm_Chr7g0222191
rosa_laevigata	RLG00000002085
rosa_multiflora	Rmu_ssc0000240.1_g000016
rosa_roxburghii	Rroxscaffold_3G00237320
rosa_rugosa	Rorug07G0206500
rosa_samantha	Rh7AG347300 Rh7BG338000 Rh7CG364700 Rh7DG345300
rosa_wichuraiana	Rw7G029420 Rw7G029880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	789
AccIII	TCCGGA	1 cut(s)	680
AciI	CCGC	4 cut(s)	165, 412, 573, 789
AclWI	GGATC	1 cut(s)	385
AcoI	YGGCCR	1 cut(s)	1038
AcsI	RAATTY	3 cut(s)	67, 752, 800
AcuI	CTGAAG	1 cut(s)	93
AfaI	GTAC	3 cut(s)	437, 786, 963
AfiI	CCNNNNNNNGG	3 cut(s)	400, 485, 851
AgsI	TTSAA	5 cut(s)	248, 304, 1023, 1076, 1094
AhdI	GACNNNNNGTC	1 cut(s)	280
AjnI	CCWGG	2 cut(s)	61, 807
AluBI	AGCT	6 cut(s)	41, 92, 532, 579, 814, 840
AluI	AGCT	6 cut(s)	41, 92, 532, 579, 814, 840
AlwI	GGATC	1 cut(s)	385
AlwNI	CAGNNNCTG	1 cut(s)	532
Ama87I	CYCGRG	2 cut(s)	222, 399
Aor13HI	TCCGGA	1 cut(s)	680
AoxI	GGCC	3 cut(s)	972, 1032, 1038
ApeKI	GCWGC	4 cut(s)	452, 455, 980, 990
ApoI	RAATTY	3 cut(s)	67, 752, 800
Asp700I	GAANNNNTTC	1 cut(s)	714
AspA2I	CCTAGG	1 cut(s)	313
AspLEI	GCGC	3 cut(s)	585, 907, 990
AspS9I	GGNCC	1 cut(s)	973
AsuHPI	GGTGA	3 cut(s)	401, 959, 1064
AsuII	TTCGAA	1 cut(s)	756
AvaI	CYCGRG	2 cut(s)	222, 399
AvrII	CCTAGG	1 cut(s)	313
BalI	TGGCCA	1 cut(s)	1040
BbsI	GAAGAC	1 cut(s)	768
BbvI	GCAGC	4 cut(s)	439, 442, 967, 977
BccI	CCATC	2 cut(s)	602, 964
BciT130I	CCWGG	2 cut(s)	63, 809
BciVI	GTATCC	1 cut(s)	1078
BclI	TGATCA	2 cut(s)	139, 859
BfaI	CTAG	4 cut(s)	314, 386, 563, 893
BfmI	CTRYAG	1 cut(s)	952
BfuI	GTATCC	1 cut(s)	1078
BisI	GCNGC	4 cut(s)	453, 456, 981, 991
BlnI	CCTAGG	1 cut(s)	313
BlsI	GCNGC	4 cut(s)	454, 457, 982, 992
Bme1390I	CCNGG	2 cut(s)	63, 809
BmeRI	GACNNNNNGTC	1 cut(s)	280
BmeT110I	CYCGRG	2 cut(s)	222, 399
BmgT120I	GGNCC	1 cut(s)	973
BmiI	GGNNCC	1 cut(s)	914
BmrFI	CCNGG	2 cut(s)	63, 809
BmrI	ACTGGG	1 cut(s)	886
BmsI	GCATC	3 cut(s)	18, 372, 734
BmuI	ACTGGG	1 cut(s)	886
BpiI	GAAGAC	1 cut(s)	768
BpmI	CTGGAG	1 cut(s)	830
Bpu10I	CCTNAGC	1 cut(s)	908
Bpu14I	TTCGAA	1 cut(s)	756
BsaBI	GATNNNNATC	1 cut(s)	1008
BsaJI	CCNNGG	3 cut(s)	313, 850, 1035
BsaWI	WCCGGW	2 cut(s)	375, 680
Bsc4I	CCNNNNNNNGG	3 cut(s)	400, 485, 851
Bse1I	ACTGG	3 cut(s)	217, 451, 881
Bse3DI	GCAATG	3 cut(s)	678, 881, 983
Bse8I	GATNNNNATC	1 cut(s)	1008
BseAI	TCCGGA	1 cut(s)	680
BseBI	CCWGG	2 cut(s)	63, 809
BseDI	CCNNGG	3 cut(s)	313, 850, 1035
BseJI	GATNNNNATC	1 cut(s)	1008
BseLI	CCNNNNNNNGG	3 cut(s)	400, 485, 851
BseMI	GCAATG	3 cut(s)	678, 881, 983
BseMII	CTCAG	1 cut(s)	539
BseNI	ACTGG	3 cut(s)	217, 451, 881
BseXI	GCAGC	4 cut(s)	439, 442, 967, 977
BseYI	CCCAGC	1 cut(s)	532
Bsh1236I	CGCG	1 cut(s)	789
Bsh1285I	CGRYCG	1 cut(s)	380
BshFI	GGCC	3 cut(s)	974, 1034, 1040
BsiEI	CGRYCG	1 cut(s)	380
BsiHKCI	CYCGRG	2 cut(s)	222, 399
BsiSI	CCGG	2 cut(s)	376, 681
BslI	CCNNNNNNNGG	3 cut(s)	400, 485, 851
BsnI	GGCC	3 cut(s)	974, 1034, 1040
BsoBI	CYCGRG	2 cut(s)	222, 399
Bsp119I	TTCGAA	1 cut(s)	756
Bsp13I	TCCGGA	1 cut(s)	680
Bsp143I	GATC	5 cut(s)	139, 390, 465, 859, 1009
BspACI	CCGC	4 cut(s)	165, 412, 573, 789
BspANI	GGCC	3 cut(s)	974, 1034, 1040
BspCNI	CTCAG	1 cut(s)	538
BspEI	TCCGGA	1 cut(s)	680
BspFNI	CGCG	1 cut(s)	789
BspHI	TCATGA	3 cut(s)	420, 592, 658
BspLI	GGNNCC	1 cut(s)	914
BspPI	GGATC	1 cut(s)	385
BspT104I	TTCGAA	1 cut(s)	756
BsrDI	GCAATG	3 cut(s)	678, 881, 983
BsrI	ACTGG	3 cut(s)	217, 451, 881
BssECI	CCNNGG	3 cut(s)	313, 850, 1035
BssMI	GATC	5 cut(s)	139, 390, 465, 859, 1009
BssT1I	CCWWGG	3 cut(s)	313, 850, 1035
Bst2UI	CCWGG	2 cut(s)	63, 809
Bst4CI	ACNGT	2 cut(s)	337, 953
BstBI	TTCGAA	1 cut(s)	756
BstC8I	GCNNGC	2 cut(s)	581, 705
BstDEI	CTNAG	2 cut(s)	525, 908
BstFNI	CGCG	1 cut(s)	789
BstHHI	GCGC	3 cut(s)	585, 907, 990
BstKTI	GATC	5 cut(s)	142, 393, 468, 862, 1012
BstMBI	GATC	5 cut(s)	139, 390, 465, 859, 1009
BstMCI	CGRYCG	1 cut(s)	380
BstMWI	GCNNNNNNNGC	1 cut(s)	980
BstNI	CCWGG	2 cut(s)	63, 809
BstNSI	RCATGY	2 cut(s)	161, 837
BstSCI	CCNGG	2 cut(s)	61, 807
BstSFI	CTRYAG	1 cut(s)	952
BstUI	CGCG	1 cut(s)	789
BstV1I	GCAGC	4 cut(s)	439, 442, 967, 977
BstV2I	GAAGAC	1 cut(s)	768
BstXI	CCANNNNNNTGG	1 cut(s)	204
BsuI	GTATCC	1 cut(s)	1078
BsuRI	GGCC	3 cut(s)	974, 1034, 1040
BtsIMutI	CAGTG	1 cut(s)	444
Cac8I	GCNNGC	2 cut(s)	581, 705
CaiI	CAGNNNCTG	1 cut(s)	532
CciI	TCATGA	3 cut(s)	420, 592, 658
CfoI	GCGC	3 cut(s)	585, 907, 990
Cfr13I	GGNCC	1 cut(s)	973
Csp6I	GTAC	3 cut(s)	436, 785, 962
CviQI	GTAC	3 cut(s)	436, 785, 962
DdeI	CTNAG	2 cut(s)	525, 908
DpnI	GATC	5 cut(s)	141, 392, 467, 861, 1011
DpnII	GATC	5 cut(s)	139, 390, 465, 859, 1009
DriI	GACNNNNNGTC	1 cut(s)	280
EaeI	YGGCCR	1 cut(s)	1038
Eam1105I	GACNNNNNGTC	1 cut(s)	280
EciI	GGCGGA	1 cut(s)	588
Eco130I	CCWWGG	3 cut(s)	313, 850, 1035
Eco147I	AGGCCT	1 cut(s)	1034
Eco57I	CTGAAG	1 cut(s)	93
Eco88I	CYCGRG	2 cut(s)	222, 399
EcoRII	CCWGG	2 cut(s)	61, 807
EcoT14I	CCWWGG	3 cut(s)	313, 850, 1035
ErhI	CCWWGG	3 cut(s)	313, 850, 1035
FauI	CCCGC	1 cut(s)	172
FbaI	TGATCA	2 cut(s)	139, 859
Fnu4HI	GCNGC	4 cut(s)	453, 456, 981, 991
Fsp4HI	GCNGC	4 cut(s)	453, 456, 981, 991
FspBI	CTAG	4 cut(s)	314, 386, 563, 893
GlaI	GCGC	3 cut(s)	584, 906, 989
GluI	GCNGC	4 cut(s)	453, 456, 981, 991
GsaI	CCCAGC	1 cut(s)	536
GsuI	CTGGAG	1 cut(s)	830
HaeIII	GGCC	3 cut(s)	974, 1034, 1040
HapII	CCGG	2 cut(s)	376, 681
HhaI	GCGC	3 cut(s)	585, 907, 990
Hin6I	GCGC	3 cut(s)	583, 905, 988
HinP1I	GCGC	3 cut(s)	583, 905, 988
HindIII	AAGCTT	1 cut(s)	577
HinfI	GANTC	2 cut(s)	684, 1004
HpaII	CCGG	2 cut(s)	376, 681
HphI	GGTGA	3 cut(s)	401, 959, 1064
Hpy166II	GTNNAC	2 cut(s)	310, 622
Hpy188I	TCNGA	5 cut(s)	37, 73, 528, 969, 1009
Hpy188III	TCNNGA	7 cut(s)	137, 421, 563, 593, 659, 681, 893
Hpy8I	GTNNAC	2 cut(s)	310, 622
HpyCH4III	ACNGT	2 cut(s)	337, 953
HpyCH4IV	ACGT	1 cut(s)	964
HpyCH4V	TGCA	7 cut(s)	161, 325, 458, 650, 671, 833, 983
HpyF10VI	GCNNNNNNNGC	1 cut(s)	980
HpyF3I	CTNAG	2 cut(s)	525, 908
HpySE526I	ACGT	1 cut(s)	964
HspAI	GCGC	3 cut(s)	583, 905, 988
Kpn2I	TCCGGA	1 cut(s)	680
Ksp22I	TGATCA	2 cut(s)	139, 859
Kzo9I	GATC	5 cut(s)	139, 390, 465, 859, 1009
LmnI	GCTCC	2 cut(s)	97, 811
Lsp1109I	GCAGC	4 cut(s)	439, 442, 967, 977
LweI	GCATC	3 cut(s)	18, 372, 734
MaeI	CTAG	4 cut(s)	314, 386, 563, 893
MaeII	ACGT	1 cut(s)	964
MaeIII	GTNAC	6 cut(s)	80, 153, 407, 488, 931, 947
MalI	GATC	5 cut(s)	141, 392, 467, 861, 1011
MboI	GATC	5 cut(s)	139, 390, 465, 859, 1009
MboII	GAAGA	7 cut(s)	86, 368, 581, 740, 770, 773, 1096
MlsI	TGGCCA	1 cut(s)	1040
MluCI	AATT	8 cut(s)	67, 85, 143, 243, 510, 518, 752, 800
MluNI	TGGCCA	1 cut(s)	1040
MnlI	CCTC	8 cut(s)	180, 231, 289, 508, 589, 815, 1024, 1043
Mox20I	TGGCCA	1 cut(s)	1040
MroI	TCCGGA	1 cut(s)	680
MroXI	GAANNNNTTC	1 cut(s)	714
MscI	TGGCCA	1 cut(s)	1040
MseI	TTAA	1 cut(s)	146
Msp20I	TGGCCA	1 cut(s)	1040
MspI	CCGG	2 cut(s)	376, 681
MspR9I	CCNGG	2 cut(s)	63, 809
MvaI	CCWGG	2 cut(s)	63, 809
MvnI	CGCG	1 cut(s)	789
MwoI	GCNNNNNNNGC	1 cut(s)	980
NdeII	GATC	5 cut(s)	139, 390, 465, 859, 1009
NlaIV	GGNNCC	1 cut(s)	914
NmeAIII	GCCGAG	1 cut(s)	953
NmuCI	GTSAC	4 cut(s)	153, 407, 931, 947
NspI	RCATGY	2 cut(s)	161, 837
NspV	TTCGAA	1 cut(s)	756
PaeR7I	CTCGAG	1 cut(s)	222
PagI	TCATGA	3 cut(s)	420, 592, 658
PceI	AGGCCT	1 cut(s)	1034
PcsI	WCGNNNNNNNCGW	1 cut(s)	762
PdmI	GAANNNNTTC	1 cut(s)	714
PfeI	GAWTC	2 cut(s)	684, 1004
PfoI	TCCNGGA	2 cut(s)	61, 807
PkrI	GCNGC	4 cut(s)	454, 457, 982, 992
Psp6I	CCWGG	2 cut(s)	61, 807
PspFI	CCCAGC	1 cut(s)	532
PspGI	CCWGG	2 cut(s)	61, 807
PspN4I	GGNNCC	1 cut(s)	914
PspPI	GGNCC	1 cut(s)	973
PspXI	VCTCGAGB	1 cut(s)	222
PstNI	CAGNNNCTG	1 cut(s)	532
RsaI	GTAC	3 cut(s)	437, 786, 963
RsaNI	GTAC	3 cut(s)	436, 785, 962
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	4 cut(s)	453, 456, 981, 991
Sau3AI	GATC	5 cut(s)	139, 390, 465, 859, 1009
Sau96I	GGNCC	1 cut(s)	973
ScrFI	CCNGG	2 cut(s)	63, 809
SfaNI	GCATC	3 cut(s)	18, 372, 734
SfcI	CTRYAG	1 cut(s)	952
Sfr274I	CTCGAG	1 cut(s)	222
SfuI	TTCGAA	1 cut(s)	756
SlaI	CTCGAG	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
Sse9I	AATT	8 cut(s)	67, 85, 143, 243, 510, 518, 752, 800
SseBI	AGGCCT	1 cut(s)	1034
SsiI	CCGC	4 cut(s)	165, 412, 573, 789
SspI	AATATT	1 cut(s)	321
SspMI	CTAG	4 cut(s)	314, 386, 563, 893
StuI	AGGCCT	1 cut(s)	1034
StyD4I	CCNGG	2 cut(s)	61, 807
StyI	CCWWGG	3 cut(s)	313, 850, 1035
TaaI	ACNGT	2 cut(s)	337, 953
TaiI	ACGT	1 cut(s)	967
TaqI	TCGA	4 cut(s)	223, 380, 756, 1048
TasI	AATT	8 cut(s)	67, 85, 143, 243, 510, 518, 752, 800
TfiI	GAWTC	2 cut(s)	684, 1004
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TscAI	CASTG	1 cut(s)	451
TseFI	GTSAC	4 cut(s)	153, 407, 931, 947
TseI	GCWGC	4 cut(s)	452, 455, 980, 990
Tsp45I	GTSAC	4 cut(s)	153, 407, 931, 947
TspDTI	ATGAA	7 cut(s)	17, 255, 369, 581, 627, 741, 1071
TspGWI	ACGGA	1 cut(s)	1060
TspRI	CASTG	1 cut(s)	451
XapI	RAATTY	3 cut(s)	67, 752, 800
XbaI	TCTAGA	2 cut(s)	562, 892
XceI	RCATGY	2 cut(s)	161, 837
XhoI	CTCGAG	1 cut(s)	222
XmaJI	CCTAGG	1 cut(s)	313
XmnI	GAANNNNTTC	1 cut(s)	714
XspI	CTAG	4 cut(s)	314, 386, 563, 893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.