Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008141

Physical Location & Seq

Genomic Coordinates Reverse (-)

37552989 .. 37553321

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g37640.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGAACGATTTTTCACAACAGGCACTGCCACTTCTAGAAAATGGTGAGTCTGGCAAACTGATGGATTGCAGATTGACGGAATCTGCTGGTGATGCTACGATGGTCCGGCATATGGCTCACGCTGCGCTGCGCTGCCTAAAAGTTGATTCAGATCACAAACTGTCTATAAGTGAGTTCCATTTCTATACACTGCTGATGCAGAATTTGTGGGATTTTTCACAGGCCTTAGCCATTTTTCGAGGTGATGAACTTGCGATTTTCAACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

90

Amino Acids

10.09

Weight (kDa)

5.11

Isoelectric Point (pI)

30.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008141)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29321
malus_domestica	MD08G1231700.v1.1
prunus_persica	Prupe.1G570300_v2.0.a1 Prupe.1G570300_v2.0.a1 Prupe.1G570300_v2.0.a1 Prupe.1G570300_v2.0.a1 Prupe.1G570300_v2.0.a1 Prupe.1G570300_v2.0.a1 Prupe.1G570300_v2.0.a1 Prupe.1G570300_v2.0.a1 Prupe.1G570300_v2.0.a1
pyrus_communis	pycom08g20150 pycom15g37640
rosa_chinensis	RchiOBHm_Chr7g0222191
rosa_laevigata	RLG00000002085
rosa_multiflora	Rmu_ssc0000240.1_g000016
rosa_roxburghii	Rroxscaffold_3G00237320
rosa_rugosa	Rorug07G0206500
rosa_samantha	Rh7AG347300 Rh7BG338000 Rh7CG364700 Rh7DG345300
rosa_wichuraiana	Rw7G029420 Rw7G029880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	202
AfiI	CCNNNNNNNGG	1 cut(s)	112
AgsI	TTSAA	1 cut(s)	262
AlwNI	CAGNNNCTG	1 cut(s)	25
AoxI	GGCC	1 cut(s)	222
ApeKI	GCWGC	3 cut(s)	122, 127, 132
ApoI	RAATTY	1 cut(s)	202
AspLEI	GCGC	2 cut(s)	127, 132
AspS9I	GGNCC	1 cut(s)	103
AsuHPI	GGTGA	3 cut(s)	56, 101, 254
AvaII	GGWCC	1 cut(s)	103
BbvI	GCAGC	3 cut(s)	109, 114, 119
BccI	CCATC	2 cut(s)	55, 94
BfaI	CTAG	1 cut(s)	35
BisI	GCNGC	3 cut(s)	123, 128, 133
BlsI	GCNGC	3 cut(s)	124, 129, 134
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	103
BmsI	GCATC	2 cut(s)	82, 186
Bpu10I	CCTNAGC	1 cut(s)	226
BsaBI	GATNNNNATC	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
Bse8I	GATNNNNATC	1 cut(s)	150
BseJI	GATNNNNATC	1 cut(s)	150
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseXI	GCAGC	3 cut(s)	109, 114, 119
BshFI	GGCC	1 cut(s)	224
BsiSI	CCGG	1 cut(s)	106
BslI	CCNNNNNNNGG	1 cut(s)	112
BsnI	GGCC	1 cut(s)	224
Bsp143I	GATC	1 cut(s)	151
BspANI	GGCC	1 cut(s)	224
BssMI	GATC	1 cut(s)	151
Bst4CI	ACNGT	1 cut(s)	162
BstDEI	CTNAG	1 cut(s)	226
BstHHI	GCGC	2 cut(s)	127, 132
BstKTI	GATC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	151
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 122
BstV1I	GCAGC	3 cut(s)	109, 114, 119
BsuRI	GGCC	1 cut(s)	224
BtsI	GCAGTG	2 cut(s)	23, 188
BtsIMutI	CAGTG	2 cut(s)	23, 188
CaiI	CAGNNNCTG	1 cut(s)	25
CfoI	GCGC	2 cut(s)	127, 132
Cfr13I	GGNCC	1 cut(s)	103
CviJI	RGCY	3 cut(s)	116, 224, 230
CviKI_1	RGCY	3 cut(s)	116, 224, 230
DdeI	CTNAG	1 cut(s)	226
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
Eco147I	AGGCCT	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	103
FaiI	YATR	4 cut(s)	111, 113, 167, 186
FauNDI	CATATG	1 cut(s)	111
Fnu4HI	GCNGC	3 cut(s)	123, 128, 133
Fsp4HI	GCNGC	3 cut(s)	123, 128, 133
FspBI	CTAG	1 cut(s)	35
GlaI	GCGC	2 cut(s)	126, 131
GluI	GCNGC	3 cut(s)	123, 128, 133
HaeIII	GGCC	1 cut(s)	224
HapII	CCGG	1 cut(s)	106
HhaI	GCGC	2 cut(s)	127, 132
Hin6I	GCGC	2 cut(s)	125, 130
HinP1I	GCGC	2 cut(s)	125, 130
HinfI	GANTC	3 cut(s)	47, 80, 146
HpaII	CCGG	1 cut(s)	106
HphI	GGTGA	3 cut(s)	56, 101, 254
Hpy188I	TCNGA	1 cut(s)	151
Hpy188III	TCNNGA	1 cut(s)	35
HpyCH4III	ACNGT	1 cut(s)	162
HpyCH4V	TGCA	2 cut(s)	69, 199
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 122
HpyF3I	CTNAG	1 cut(s)	226
HspAI	GCGC	2 cut(s)	125, 130
Kzo9I	GATC	1 cut(s)	151
LpnPI	CCDG	5 cut(s)	5, 36, 72, 119, 206
Lsp1109I	GCAGC	3 cut(s)	109, 114, 119
LweI	GCATC	2 cut(s)	82, 186
MaeI	CTAG	1 cut(s)	35
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MluCI	AATT	1 cut(s)	202
MlyI	GAGTC	1 cut(s)	56
MnlI	CCTC	1 cut(s)	233
MspI	CCGG	1 cut(s)	106
MteI	GCGCNGCGC	1 cut(s)	128
MwoI	GCNNNNNNNGC	2 cut(s)	92, 122
NdeI	CATATG	1 cut(s)	111
NdeII	GATC	1 cut(s)	151
PceI	AGGCCT	1 cut(s)	224
PfeI	GAWTC	2 cut(s)	80, 146
PkrI	GCNGC	3 cut(s)	124, 129, 134
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
PspPI	GGNCC	1 cut(s)	103
PstNI	CAGNNNCTG	1 cut(s)	25
SatI	GCNGC	3 cut(s)	123, 128, 133
Sau3AI	GATC	1 cut(s)	151
Sau96I	GGNCC	1 cut(s)	103
SchI	GAGTC	1 cut(s)	56
SetI	ASST	1 cut(s)	244
SfaNI	GCATC	2 cut(s)	82, 186
SgeI	CNNG	9 cut(s)	32, 47, 63, 99, 118, 131, 233, 251, 263
SinI	GGWCC	1 cut(s)	103
Sse9I	AATT	1 cut(s)	202
SseBI	AGGCCT	1 cut(s)	224
SspMI	CTAG	1 cut(s)	35
StuI	AGGCCT	1 cut(s)	224
TaaI	ACNGT	1 cut(s)	162
TaqI	TCGA	1 cut(s)	238
TasI	AATT	1 cut(s)	202
TfiI	GAWTC	2 cut(s)	80, 146
TscAI	CASTG	2 cut(s)	30, 195
TseI	GCWGC	3 cut(s)	122, 127, 132
TspDTI	ATGAA	2 cut(s)	17, 261
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	2 cut(s)	30, 195
VpaK11BI	GGWCC	1 cut(s)	103
XapI	RAATTY	1 cut(s)	202
XbaI	TCTAGA	1 cut(s)	34
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.