Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008141

Physical Location & Seq

Genomic Coordinates Forward (+)

43366548 .. 43369174

Gene Structure 2627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19884

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGAAAATCAGTTGCTTCATATGCTTCTACTCTTCACTACTAAGTGGAATCAGTAAAAGTGGAACCAATGAACTGCCATTCTATCATAGTTTAAAATGGCAAATTAAGAATCAGAGAGAGATTATAGCATTGAATATAGATCATGATAAGGGAGAGGTATGGAACAGAGTAATGATGTTTTTGCAAGTCCCGCATAATTTGGGTCAAATCTTATTTACTTGCAGTCTTCAAAAATCTCTTAGGATTTTAATTGAGTTCAAGTCTCTCTGTCTCTCATGTAATAAACTGGGTTACATATTGTGCTCTACATATATAGAAGGTTTGCATCACTTTAGGAAATCCCAACTTTTTCTACGGGGACATGTAAGCTGCAGCATTGCAGTAATGAAGGGTAAAGATTTCGCTACCTTGATGCTGTCAGAAGCTACCCCACCTGACATCTTTCCTGGAAATTCTGAAGAAAGTTACAATTCAGCTCCTACAGACAATCCTATGGAAGTGTCTACTAAAAGTTTAAGTCCTGATCAATTAACAAAGTCACATGCACCCGCATCTCATCGTCAAAATCCTTGTTGCTACCCAATGTCTTGGAGAACTGGCTTCCCTCGAGTATTTTCGCACAATGAAATTGAAGTGATAACAAATGGCTTTGCCGATGACTATATCTCAAAAGACATTGAGGGCTTGAAAGTTTACCTAGGAATATTGCAAGACACAACTGTTTTAGTCAAGTCTTATGAAGAAGTAAATAAATGCTTCCGGTCGATGCTAGTGATCCTTTCTCGGGTATGTCACCGCAATATCATGAACCTTGTAGGGTACTGCTACACTGGGGCTGCTGCATACTTGATCTTTGACTTTCCATGTTTGGGTAACATGGAATACAACTTGCGAAATGAGGAATTGGCTCAGAAGCTGGGGTGGAAAACAAGGTGGTATATTGCTCTAGAGATAGGCGGAAGCTTGCGCTATCTTCATGAGGAATGTGCTGATGGTTCTATTGTTCACAAATCTGTTTGTTCATGTAGTGTTTCACTTTCTCATGATTACTCTGCAATGGTGAGTTCTGATGCTCCACATACCTATATGAGAACAACAATATGGCTTTCCAGATTCACAACTGCTGAATGGCTTGCTGAATGTGTTCCCCATGATGAAGATTTGATTGCCAGCCTTTTTGTAGATGTACGCGGATATGGGAAATTCCTCCTGGAGCTTATTACAGGAAAAAGTGCATGTAGCTTTCCAAACCAAGGGAAGGATCAGTCCATGATTGACTGGGTAAGATCTCTGGGACAATGTAAAGCTAGTGGTTCCTCTCATTTGTCCTGGAGCAACTTAAAGTACAAATTTGCTTCTTCTAACAGAGCAAGTATTTGGTCTTTTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

463

Amino Acids

52.41

Weight (kDa)

7.79

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	231 - 412	1e-09	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008141)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29321
malus_domestica	MD08G1231700.v1.1
prunus_persica	Prupe.1G570300_v2.0.a1 Prupe.1G570300_v2.0.a1 Prupe.1G570300_v2.0.a1 Prupe.1G570300_v2.0.a1 Prupe.1G570300_v2.0.a1 Prupe.1G570300_v2.0.a1 Prupe.1G570300_v2.0.a1 Prupe.1G570300_v2.0.a1 Prupe.1G570300_v2.0.a1
pyrus_communis	pycom08g20150 pycom15g37640
rosa_chinensis	RchiOBHm_Chr7g0222191
rosa_laevigata	RLG00000002085
rosa_multiflora	Rmu_ssc0000240.1_g000016
rosa_roxburghii	Rroxscaffold_3G00237320
rosa_rugosa	Rorug07G0206500
rosa_samantha	Rh7AG347300 Rh7BG338000 Rh7CG364700 Rh7DG345300
rosa_wichuraiana	Rw7G029420 Rw7G029880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	503
AccII	CGCG	1 cut(s)	1191
AciI	CCGC	5 cut(s)	191, 549, 796, 957, 1191
AclWI	GGATC	2 cut(s)	769, 1269
AcsI	RAATTY	3 cut(s)	451, 1202, 1349
AcuI	CTGAAG	1 cut(s)	477
AfaI	GTAC	3 cut(s)	821, 1188, 1346
AfiI	CCNNNNNNNGG	4 cut(s)	784, 869, 1253, 1258
AflIII	ACRYGT	1 cut(s)	361
AgsI	TTSAA	5 cut(s)	133, 230, 259, 632, 688
AjnI	CCWGG	3 cut(s)	445, 1209, 1328
AluBI	AGCT	8 cut(s)	369, 425, 476, 916, 963, 1216, 1242, 1307
AluI	AGCT	8 cut(s)	369, 425, 476, 916, 963, 1216, 1242, 1307
Alw21I	GWGCWC	1 cut(s)	305
Alw26I	GTCTC	2 cut(s)	267, 275
AlwI	GGATC	2 cut(s)	769, 1269
AlwNI	CAGNNNCTG	1 cut(s)	916
Ama87I	CYCGRG	2 cut(s)	606, 783
ApeKI	GCWGC	4 cut(s)	369, 372, 836, 839
ApoI	RAATTY	3 cut(s)	451, 1202, 1349
Asp700I	GAANNNNTTC	1 cut(s)	1143
AspA2I	CCTAGG	1 cut(s)	697
AspLEI	GCGC	1 cut(s)	969
AsuHPI	GGTGA	2 cut(s)	785, 1072
AvaI	CYCGRG	2 cut(s)	606, 783
AvrII	CCTAGG	1 cut(s)	697
BbsI	GAAGAC	1 cut(s)	218
Bbv12I	GWGCWC	1 cut(s)	305
BbvI	GCAGC	4 cut(s)	356, 384, 823, 826
BccI	CCATC	1 cut(s)	986
BciT130I	CCWGG	3 cut(s)	447, 1211, 1330
BclI	TGATCA	1 cut(s)	523
BcoDI	GTCTC	2 cut(s)	267, 275
BfaI	CTAG	4 cut(s)	698, 770, 947, 1308
BfmI	CTRYAG	2 cut(s)	370, 480
BglII	AGATCT	1 cut(s)	1286
BisI	GCNGC	4 cut(s)	370, 373, 837, 840
BlnI	CCTAGG	1 cut(s)	697
BlsI	GCNGC	4 cut(s)	371, 374, 838, 841
Bme1390I	CCNGG	3 cut(s)	447, 1211, 1330
BmeT110I	CYCGRG	2 cut(s)	606, 783
BmiI	GGNNCC	2 cut(s)	64, 1315
BmrFI	CCNGG	3 cut(s)	447, 1211, 1330
BmrI	ACTGGG	3 cut(s)	296, 840, 1288
BmsI	GCATC	5 cut(s)	334, 402, 560, 756, 1060
BmuI	ACTGGG	3 cut(s)	296, 840, 1288
BpiI	GAAGAC	1 cut(s)	218
BpmI	CTGGAG	2 cut(s)	1232, 1351
BsaJI	CCNNGG	2 cut(s)	697, 1252
BsaWI	WCCGGW	1 cut(s)	759
Bsc4I	CCNNNNNNNGG	4 cut(s)	784, 869, 1253, 1258
Bse1I	ACTGG	4 cut(s)	291, 601, 835, 1283
Bse3DI	GCAATG	2 cut(s)	375, 1062
BseBI	CCWGG	3 cut(s)	447, 1211, 1330
BseDI	CCNNGG	2 cut(s)	697, 1252
BseLI	CCNNNNNNNGG	4 cut(s)	784, 869, 1253, 1258
BseMI	GCAATG	2 cut(s)	375, 1062
BseMII	CTCAG	1 cut(s)	923
BseNI	ACTGG	4 cut(s)	291, 601, 835, 1283
BseXI	GCAGC	4 cut(s)	356, 384, 823, 826
BseYI	CCCAGC	1 cut(s)	916
Bsh1236I	CGCG	1 cut(s)	1191
Bsh1285I	CGRYCG	1 cut(s)	764
BsiEI	CGRYCG	1 cut(s)	764
BsiHKAI	GWGCWC	1 cut(s)	305
BsiHKCI	CYCGRG	2 cut(s)	606, 783
BsiSI	CCGG	1 cut(s)	760
BslFI	GGGAC	3 cut(s)	173, 372, 1308
BslI	CCNNNNNNNGG	4 cut(s)	784, 869, 1253, 1258
BsmAI	GTCTC	2 cut(s)	267, 275
BsmFI	GGGAC	3 cut(s)	173, 372, 1308
BsoBI	CYCGRG	2 cut(s)	606, 783
Bsp1286I	GDGCHC	1 cut(s)	305
Bsp143I	GATC	6 cut(s)	139, 523, 774, 849, 1261, 1286
BspACI	CCGC	5 cut(s)	191, 549, 796, 957, 1191
BspCNI	CTCAG	1 cut(s)	922
BspFNI	CGCG	1 cut(s)	1191
BspHI	TCATGA	4 cut(s)	142, 804, 976, 1042
BspLI	GGNNCC	2 cut(s)	64, 1315
BspMAI	CTGCAG	1 cut(s)	374
BspPI	GGATC	2 cut(s)	769, 1269
BsrDI	GCAATG	2 cut(s)	375, 1062
BsrI	ACTGG	4 cut(s)	291, 601, 835, 1283
BssECI	CCNNGG	2 cut(s)	697, 1252
BssMI	GATC	6 cut(s)	139, 523, 774, 849, 1261, 1286
BssT1I	CCWWGG	2 cut(s)	697, 1252
Bst2UI	CCWGG	3 cut(s)	447, 1211, 1330
Bst4CI	ACNGT	1 cut(s)	721
Bst6I	CTCTTC	1 cut(s)	37
BstC8I	GCNNGC	3 cut(s)	965, 1134, 1171
BstDEI	CTNAG	3 cut(s)	41, 239, 909
BstFNI	CGCG	1 cut(s)	1191
BstHHI	GCGC	1 cut(s)	969
BstKTI	GATC	6 cut(s)	142, 526, 777, 852, 1264, 1289
BstMAI	GTCTC	2 cut(s)	267, 275
BstMBI	GATC	6 cut(s)	139, 523, 774, 849, 1261, 1286
BstMCI	CGRYCG	1 cut(s)	764
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 190
BstNI	CCWGG	3 cut(s)	447, 1211, 1330
BstNSI	RCATGY	3 cut(s)	365, 545, 1239
BstSCI	CCNGG	3 cut(s)	445, 1209, 1328
BstSFI	CTRYAG	2 cut(s)	370, 480
BstUI	CGCG	1 cut(s)	1191
BstV1I	GCAGC	4 cut(s)	356, 384, 823, 826
BstV2I	GAAGAC	1 cut(s)	218
BstX2I	RGATCY	1 cut(s)	1286
BstXI	CCANNNNNNTGG	1 cut(s)	588
BstYI	RGATCY	1 cut(s)	1286
BtsIMutI	CAGTG	1 cut(s)	828
Cac8I	GCNNGC	3 cut(s)	965, 1134, 1171
CaiI	CAGNNNCTG	1 cut(s)	916
CciI	TCATGA	4 cut(s)	142, 804, 976, 1042
CfoI	GCGC	1 cut(s)	969
Csp6I	GTAC	3 cut(s)	820, 1187, 1345
CviQI	GTAC	3 cut(s)	820, 1187, 1345
DdeI	CTNAG	3 cut(s)	41, 239, 909
DpnI	GATC	6 cut(s)	141, 525, 776, 851, 1263, 1288
DpnII	GATC	6 cut(s)	139, 523, 774, 849, 1261, 1286
DraI	TTTAAA	1 cut(s)	93
Eam1104I	CTCTTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	37
EciI	GGCGGA	1 cut(s)	972
Eco130I	CCWWGG	2 cut(s)	697, 1252
Eco57I	CTGAAG	1 cut(s)	477
Eco88I	CYCGRG	2 cut(s)	606, 783
EcoRII	CCWGG	3 cut(s)	445, 1209, 1328
EcoT14I	CCWWGG	2 cut(s)	697, 1252
ErhI	CCWWGG	2 cut(s)	697, 1252
FaqI	GGGAC	3 cut(s)	173, 372, 1308
FauI	CCCGC	2 cut(s)	198, 556
FauNDI	CATATG	1 cut(s)	20
FbaI	TGATCA	1 cut(s)	523
FblI	GTMKAC	1 cut(s)	503
Fnu4HI	GCNGC	4 cut(s)	370, 373, 837, 840
Fsp4HI	GCNGC	4 cut(s)	370, 373, 837, 840
FspBI	CTAG	4 cut(s)	698, 770, 947, 1308
GlaI	GCGC	1 cut(s)	968
GluI	GCNGC	4 cut(s)	370, 373, 837, 840
GsaI	CCCAGC	1 cut(s)	920
GsuI	CTGGAG	2 cut(s)	1232, 1351
HapII	CCGG	1 cut(s)	760
HhaI	GCGC	1 cut(s)	969
Hin6I	GCGC	1 cut(s)	967
HinP1I	GCGC	1 cut(s)	967
HindIII	AAGCTT	1 cut(s)	961
HinfI	GANTC	3 cut(s)	48, 109, 1113
HpaII	CCGG	1 cut(s)	760
HphI	GGTGA	2 cut(s)	785, 1072
Hpy166II	GTNNAC	3 cut(s)	504, 694, 1006
Hpy188I	TCNGA	5 cut(s)	114, 421, 457, 912, 1069
Hpy188III	TCNNGA	7 cut(s)	143, 521, 805, 947, 977, 1043, 1110
Hpy8I	GTNNAC	3 cut(s)	504, 694, 1006
HpyAV	CCTTC	3 cut(s)	311, 382, 1252
HpyCH4III	ACNGT	1 cut(s)	721
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 190
HpyF3I	CTNAG	3 cut(s)	41, 239, 909
HspAI	GCGC	1 cut(s)	967
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	6 cut(s)	139, 523, 774, 849, 1261, 1286
LmnI	GCTCC	4 cut(s)	481, 1078, 1213, 1332
Lsp1109I	GCAGC	4 cut(s)	356, 384, 823, 826
LweI	GCATC	5 cut(s)	334, 402, 560, 756, 1060
MaeI	CTAG	4 cut(s)	698, 770, 947, 1308
MaeIII	GTNAC	5 cut(s)	290, 464, 537, 791, 872
MalI	GATC	6 cut(s)	141, 525, 776, 851, 1263, 1288
MboI	GATC	6 cut(s)	139, 523, 774, 849, 1261, 1286
MboII	GAAGA	7 cut(s)	24, 218, 470, 752, 965, 1169, 1350
MflI	RGATCY	1 cut(s)	1286
MhlI	GDGCHC	1 cut(s)	305
MnlI	CCTC	7 cut(s)	148, 615, 673, 892, 973, 1217, 1327
MroXI	GAANNNNTTC	1 cut(s)	1143
MseI	TTAA	6 cut(s)	92, 105, 248, 515, 530, 1340
MspI	CCGG	1 cut(s)	760
MspR9I	CCNGG	3 cut(s)	447, 1211, 1330
MvaI	CCWGG	3 cut(s)	447, 1211, 1330
MvnI	CGCG	1 cut(s)	1191
MwoI	GCNNNNNNNGC	2 cut(s)	21, 190
NdeI	CATATG	1 cut(s)	20
NdeII	GATC	6 cut(s)	139, 523, 774, 849, 1261, 1286
NlaIV	GGNNCC	2 cut(s)	64, 1315
NmuCI	GTSAC	2 cut(s)	537, 791
NspI	RCATGY	3 cut(s)	365, 545, 1239
PaeR7I	CTCGAG	1 cut(s)	606
PagI	TCATGA	4 cut(s)	142, 804, 976, 1042
PciI	ACATGT	1 cut(s)	361
PdmI	GAANNNNTTC	1 cut(s)	1143
PfeI	GAWTC	3 cut(s)	48, 109, 1113
PfoI	TCCNGGA	3 cut(s)	445, 1209, 1328
PkrI	GCNGC	4 cut(s)	371, 374, 838, 841
PscI	ACATGT	1 cut(s)	361
Psp6I	CCWGG	3 cut(s)	445, 1209, 1328
PspFI	CCCAGC	1 cut(s)	916
PspGI	CCWGG	3 cut(s)	445, 1209, 1328
PspN4I	GGNNCC	2 cut(s)	64, 1315
PspXI	VCTCGAGB	1 cut(s)	606
PstI	CTGCAG	1 cut(s)	374
PstNI	CAGNNNCTG	1 cut(s)	916
PsuI	RGATCY	1 cut(s)	1286
RsaI	GTAC	3 cut(s)	821, 1188, 1346
RsaNI	GTAC	3 cut(s)	820, 1187, 1345
SaqAI	TTAA	6 cut(s)	92, 105, 248, 515, 530, 1340
SatI	GCNGC	4 cut(s)	370, 373, 837, 840
Sau3AI	GATC	6 cut(s)	139, 523, 774, 849, 1261, 1286
ScrFI	CCNGG	3 cut(s)	447, 1211, 1330
SduI	GDGCHC	1 cut(s)	305
SfaNI	GCATC	5 cut(s)	334, 402, 560, 756, 1060
SfcI	CTRYAG	2 cut(s)	370, 480
Sfr274I	CTCGAG	1 cut(s)	606
SlaI	CTCGAG	1 cut(s)	606
SmlI	CTYRAG	1 cut(s)	606
SmoI	CTYRAG	1 cut(s)	606
SsiI	CCGC	5 cut(s)	191, 549, 796, 957, 1191
SspI	AATATT	1 cut(s)	705
SspMI	CTAG	4 cut(s)	698, 770, 947, 1308
StyD4I	CCNGG	3 cut(s)	445, 1209, 1328
StyI	CCWWGG	2 cut(s)	697, 1252
TaaI	ACNGT	1 cut(s)	721
TaqI	TCGA	2 cut(s)	607, 764
TatI	WGTACW	1 cut(s)	1344
TfiI	GAWTC	3 cut(s)	48, 109, 1113
Tru1I	TTAA	6 cut(s)	92, 105, 248, 515, 530, 1340
Tru9I	TTAA	6 cut(s)	92, 105, 248, 515, 530, 1340
TscAI	CASTG	1 cut(s)	835
TseFI	GTSAC	2 cut(s)	537, 791
TseI	GCWGC	4 cut(s)	369, 372, 836, 839
Tsp45I	GTSAC	2 cut(s)	537, 791
TspRI	CASTG	1 cut(s)	835
XapI	RAATTY	3 cut(s)	451, 1202, 1349
XbaI	TCTAGA	1 cut(s)	946
XceI	RCATGY	3 cut(s)	365, 545, 1239
XhoI	CTCGAG	1 cut(s)	606
XmaJI	CCTAGG	1 cut(s)	697
XmiI	GTMKAC	1 cut(s)	503
XmnI	GAANNNNTTC	1 cut(s)	1143
XspI	CTAG	4 cut(s)	698, 770, 947, 1308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.