FvH4_5g29861

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
20754621 .. 20757919
3299 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g29861.t2

Sequence Viewer

Length: 1734 bp
ATGCTCAGAGTTCCCGCCAGTTTCCGAAACCTTAGATTTCCCCATTTTCCACTCTCACGTTCTACTTCCCGCAACAACCTATCCCAATGCTTGGTGGGTTTCATGTATCACACCAAATTGAGTGCCTCATCTTACAAGTCACTGCTCTCCGATCACCTCAGAAACCATAGACTAGATGAAGCTATCCTTCTTTTCAATACAATCCCTTCTCCCGGTGCCGATATGTTTACCAAAATGATAACGGGCTATGCGCGACGGGGTAGGCTTGACGATGCCCTGAAGCTGTTCGATGAAATGCCTCAGAGAGATGTGGTCTCGTGGAATGCGATGATCAAAGGTTGTTTGGATTGTGATGATTTGGGTAAGGCTAAGGAGCTGTTTGATGAAATGCCGGAGAAGAGTGTGGTGTCGTGGACGACCATGATGAATGGGTACTTGCAGTTTGGAGAGTTTGAAATGGCAGAGTGCTTGTTTCAGAAAATGCCCGCGAGGGATGTGGCTGCGTGGAACTCCATGATTCATGGATGTTTTAGCTATGGAAGAGTAGATGATGCTAACAAGTTGTTTGAGGTGATGCCTGGGAAGAATGCCATTTCGTGGACTTCCATGATTGCTGGGCTTGACCAGAATGGGAGGAGTGAGGAAGCTTTGGTTGTTTTCGGAGAGATGGTGGCGTCTGGCGTACAAGCCACTTTGACCACATTTGGGAGCGTGGTGACAGCTTGTGCGAATTCGGGGAGTTTAGATTTAGGTGTAGAGGTTCATGGTCAGATTGTCAAGTTAGGGTACTGCTTTGATGTATTCTTAGCTGCTTCACTTATAACACTTTATGCAAACTGCAATCAAATAGAGAATTCTCACAAGGTTTTTAAGGAGAGTGTGCATAGAAATGTGGTGGTATGGACAGCTCTTATAACAGGATGTGGATCGAATTCTAAACACGATGATGCATTGAAGGTTTTTAGGGATATGATGATCTCAGGAGTCCTCCCCAATCAATCTTCTTTCACTAGTGCTCTGAATTCATGTTTGGGATTGGAACATCTCCATAGGGGAAAGGAGATACATGCCACAGCTGTTAAGTTGGGTTTTGAAACTGATGCCTTTGTGGGTAATTCTCTCATTGTCTTGTATACCAAATGTGGAAATGTAAATGATGGAGTTGCTGTATTTAAGAGAATTGGTGAGAAGAATGTTGTCTCATGGAACTCAACCATCATTGGATGCGCGCAACACGGTCGTGGAAAGTGGGCATTGGCTCTCTTTAACCAAATGTTACGGGCAGATGTAGGCCCCGATGAAATTACATTGACTGGGTTGCTCTCTGCATGTAGCCATTCTGGAATGTTGCAGAAAGCAAGAGGCTTTTTCAAAGTTTTATCTCAGACTAAATATATTGAAATGAAAAAGGAGCACTTTACATGTATGGTGGATGTCTTGGGACGATTTGGCGAATTAGAAGAAGCGGAGGAGTTTATTAGAAACATGCCTGTTCAAGAAACTAAGATGGCTTGGCTAACTTTACTTGGTGCTTGTAGGTTGCATTCCAATTTGGATGTGGCTGAAAGAGCAGCAAAGAACATTTTTGATATAGAACCGAACTGTAGTGCTGCGTGTGTTTTATTGTCGAATATATATGCTTCTGCAAATAGATGGAGCGATGTAAGCAGAATACGAGAGAAGATGAAGTATGGTGGAACTGTAAAACAACCGGGTTCGAGTTGGTTTACTTAG

Protein Analysis

578

Amino Acids

64.01

Weight (kDa)

7.53

Isoelectric Point (pI)

39.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 75 - 103 5.8e-07 PPR repeat
PPR_2 PF13041 75 - 103 6.5e-06 PPR repeat family
PPR_1 PF12854 76 - 99 4e-06 PPR repeat
PPR_2 PF13041 102 - 135 4.9e-07 PPR repeat family
PPR PF01535 105 - 134 1.4e-06 PPR repeat
PPR_2 PF13041 134 - 166 4.4e-06 PPR repeat family
PPR PF01535 136 - 165 1.5e-06 PPR repeat
PPR_2 PF13041 164 - 195 6.5e-06 PPR repeat family
PPR_2 PF13041 196 - 244 2.1e-07 PPR repeat family
PPR_2 PF13041 296 - 343 3.9e-10 PPR repeat family
PPR PF01535 299 - 329 7e-06 PPR repeat
PPR_2 PF13041 397 - 445 2.9e-09 PPR repeat family
E_motif PF20431 515 - 575 1.7e-17 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013048)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 821, 914
AccB1I GGYRCC 1 cut(s) 215
AccB7I CCANNNNNTGG 2 cut(s) 91, 597
AccI GTMKAC 1 cut(s) 1133
AccII CGCG 3 cut(s) 253, 488, 1229
AciI CCGC 4 cut(s) 15, 70, 486, 1466
AclWI GGATC 1 cut(s) 934
AcsI RAATTY 4 cut(s) 730, 853, 931, 1021
AcuI CTGAAG 1 cut(s) 299
AcyI GRCGYC 1 cut(s) 674
AfaI GTAC 3 cut(s) 434, 684, 788
AfiI CCNNNNNNNGG 4 cut(s) 91, 212, 597, 705
AflIII ACRYGT 1 cut(s) 1421
AgsI TTSAA 7 cut(s) 196, 455, 955, 1094, 1372, 1400, 1496
AhlI ACTAGT 1 cut(s) 1010
AjnI CCWGG 1 cut(s) 577
AjuI GAANNNNNNNTTGG 2 cut(s) 1013, 1045
AleI CACNNNNGTG 1 cut(s) 1239
AluBI AGCT 9 cut(s) 182, 283, 376, 534, 647, 722, 809, 908, 1076
AluI AGCT 9 cut(s) 182, 283, 376, 534, 647, 722, 809, 908, 1076
Alw21I GWGCWC 2 cut(s) 1018, 1416
Alw26I GTCTC 2 cut(s) 319, 1204
AlwI GGATC 1 cut(s) 934
AoxI GGCC 1 cut(s) 1291
ApeKI GCWGC 4 cut(s) 500, 809, 1571, 1610
ApoI RAATTY 4 cut(s) 730, 853, 931, 1021
Asp700I GAANNNNTTC 1 cut(s) 284
AspLEI GCGC 3 cut(s) 253, 1229, 1231
AspS9I GGNCC 1 cut(s) 1292
AsuC2I CCSGG 2 cut(s) 213, 1713
AsuHPI GGTGA 4 cut(s) 146, 583, 727, 1196
BanI GGYRCC 1 cut(s) 215
BauI CACGAG 1 cut(s) 316
Bbv12I GWGCWC 2 cut(s) 1018, 1416
BbvI GCAGC 4 cut(s) 487, 796, 1583, 1597
BccI CCATC 5 cut(s) 661, 1151, 1223, 1501, 1647
BcgI CGANNNNNNTGC 2 cut(s) 1220, 1254
BciT130I CCWGG 1 cut(s) 579
BclI TGATCA 1 cut(s) 330
BcnI CCSGG 2 cut(s) 213, 1713
BcoDI GTCTC 2 cut(s) 319, 1204
BcuI ACTAGT 1 cut(s) 1010
BfaI CTAG 2 cut(s) 173, 1011
BfmI CTRYAG 1 cut(s) 1603
BisI GCNGC 4 cut(s) 501, 810, 1572, 1611
BlsI GCNGC 4 cut(s) 502, 811, 1573, 1612
Bme1390I CCNGG 3 cut(s) 213, 579, 1713
BmgT120I GGNCC 1 cut(s) 1292
BmiI GGNNCC 2 cut(s) 217, 1294
BmrFI CCNGG 3 cut(s) 213, 579, 1713
BmrI ACTGGG 1 cut(s) 1323
BmsI GCATC 6 cut(s) 262, 541, 564, 937, 1090, 1214
BmuI ACTGGG 1 cut(s) 1323
Bpu10I CCTNAGC 1 cut(s) 369
BpuMI CCSGG 2 cut(s) 213, 1713
BsaBI GATNNNNATC 1 cut(s) 925
BsaHI GRCGYC 1 cut(s) 674
BsaI GGTCTC 1 cut(s) 319
BsaJI CCNNGG 1 cut(s) 578
BsaXI ACNNNNNCTCC 4 cut(s) 654, 684, 1152, 1182
Bsc4I CCNNNNNNNGG 4 cut(s) 91, 212, 597, 705
Bse1I ACTGG 2 cut(s) 18, 1318
Bse8I GATNNNNATC 1 cut(s) 925
BseBI CCWGG 1 cut(s) 579
BseDI CCNNGG 1 cut(s) 578
BseGI GGATG 6 cut(s) 499, 530, 926, 1229, 1438, 1561
BseJI GATNNNNATC 1 cut(s) 925
BseLI CCNNNNNNNGG 4 cut(s) 91, 212, 597, 705
BseMII CTCAG 5 cut(s) 19, 172, 314, 993, 1397
BseNI ACTGG 2 cut(s) 18, 1318
BsePI GCGCGC 1 cut(s) 1227
BseRI GAGGAG 2 cut(s) 649, 1484
BseXI GCAGC 4 cut(s) 487, 796, 1583, 1597
BseYI CCCAGC 1 cut(s) 614
Bsh1236I CGCG 3 cut(s) 253, 488, 1229
Bsh1285I CGRYCG 1 cut(s) 1240
BshFI GGCC 1 cut(s) 1293
BshNI GGYRCC 1 cut(s) 215
BsiEI CGRYCG 1 cut(s) 1240
BsiHKAI GWGCWC 2 cut(s) 1018, 1416
BsiSI CCGG 3 cut(s) 213, 392, 1712
BslFI GGGAC 1 cut(s) 1455
BslI CCNNNNNNNGG 4 cut(s) 91, 212, 597, 705
BsmAI GTCTC 2 cut(s) 319, 1204
BsmFI GGGAC 1 cut(s) 1455
BsmI GAATGC 3 cut(s) 328, 592, 1543
BsnI GGCC 1 cut(s) 1293
Bso31I GGTCTC 1 cut(s) 319
Bsp1286I GDGCHC 2 cut(s) 1018, 1416
Bsp143I GATC 4 cut(s) 151, 330, 926, 975
BspACI CCGC 4 cut(s) 15, 70, 486, 1466
BspANI GGCC 1 cut(s) 1293
BspCNI CTCAG 5 cut(s) 18, 171, 313, 992, 1396
BspFNI CGCG 3 cut(s) 253, 488, 1229
BspLI GGNNCC 2 cut(s) 217, 1294
BspPI GGATC 1 cut(s) 934
BspT107I GGYRCC 1 cut(s) 215
BspTNI GGTCTC 1 cut(s) 319
BsrI ACTGG 2 cut(s) 18, 1318
BssECI CCNNGG 1 cut(s) 578
BssHII GCGCGC 1 cut(s) 1227
BssMI GATC 4 cut(s) 151, 330, 926, 975
BssNAI GTATAC 1 cut(s) 1134
BssNI GRCGYC 1 cut(s) 674
BssSI CACGAG 1 cut(s) 316
Bst1107I GTATAC 1 cut(s) 1134
Bst2BI CACGAG 1 cut(s) 316
Bst2UI CCWGG 1 cut(s) 579
Bst4CI ACNGT 3 cut(s) 1238, 1604, 1702
Bst6I CTCTTC 2 cut(s) 392, 535
BstACI GRCGYC 1 cut(s) 674
BstC8I GCNNGC 2 cut(s) 486, 1229
BstF5I GGATG 6 cut(s) 499, 530, 926, 1229, 1438, 1561
BstFNI CGCG 3 cut(s) 253, 488, 1229
BstHHI GCGC 3 cut(s) 253, 1229, 1231
BstKTI GATC 4 cut(s) 154, 333, 929, 978
BstMAI GTCTC 2 cut(s) 319, 1204
BstMBI GATC 4 cut(s) 151, 330, 926, 975
BstMCI CGRYCG 1 cut(s) 1240
BstMWI GCNNNNNNNGC 2 cut(s) 1568, 1665
BstNI CCWGG 1 cut(s) 579
BstNSI RCATGY 4 cut(s) 1070, 1332, 1425, 1489
BstSCI CCNGG 3 cut(s) 211, 577, 1711
BstSFI CTRYAG 1 cut(s) 1603
BstUI CGCG 3 cut(s) 253, 488, 1229
BstV1I GCAGC 4 cut(s) 487, 796, 1583, 1597
BstZ17I GTATAC 1 cut(s) 1134
BsuRI GGCC 1 cut(s) 1293
BtgZI GCGATG 2 cut(s) 341, 1674
BtsCI GGATG 6 cut(s) 499, 530, 926, 1229, 1438, 1561
BtsI GCAGTG 1 cut(s) 140
BtsIMutI CAGTG 1 cut(s) 140
Cac8I GCNNGC 2 cut(s) 486, 1229
CfoI GCGC 3 cut(s) 253, 1229, 1231
Cfr13I GGNCC 1 cut(s) 1292
CseI GACGC 1 cut(s) 663
Csp6I GTAC 3 cut(s) 433, 683, 787
CviQI GTAC 3 cut(s) 433, 683, 787
DpnI GATC 4 cut(s) 153, 332, 928, 977
DpnII GATC 4 cut(s) 151, 330, 926, 975
Eam1104I CTCTTC 2 cut(s) 392, 535
EarI CTCTTC 2 cut(s) 392, 535
Eco31I GGTCTC 1 cut(s) 319
Eco57I CTGAAG 1 cut(s) 299
EcoO109I RGGNCCY 1 cut(s) 1292
EcoRI GAATTC 4 cut(s) 730, 853, 931, 1021
EcoRII CCWGG 1 cut(s) 577
EcoT22I ATGCAT 1 cut(s) 952
FalI AAGNNNNNCTT 4 cut(s) 171, 203, 1400, 1432
FaqI GGGAC 1 cut(s) 1455
FauI CCCGC 3 cut(s) 22, 77, 493
FbaI TGATCA 1 cut(s) 330
FblI GTMKAC 1 cut(s) 1133
Fnu4HI GCNGC 4 cut(s) 501, 810, 1572, 1611
FokI GGATG 6 cut(s) 506, 537, 933, 1236, 1445, 1568
Fsp4HI GCNGC 4 cut(s) 501, 810, 1572, 1611
FspBI CTAG 2 cut(s) 173, 1011
GlaI GCGC 3 cut(s) 252, 1228, 1230
GluI GCNGC 4 cut(s) 501, 810, 1572, 1611
GsaI CCCAGC 1 cut(s) 618
HaeIII GGCC 1 cut(s) 1293
HapII CCGG 3 cut(s) 213, 392, 1712
HgaI GACGC 1 cut(s) 663
HhaI GCGC 3 cut(s) 253, 1229, 1231
Hin1I GRCGYC 1 cut(s) 674
Hin6I GCGC 3 cut(s) 251, 1227, 1229
HinP1I GCGC 3 cut(s) 251, 1227, 1229
HindIII AAGCTT 1 cut(s) 645
HinfI GANTC 2 cut(s) 517, 984
HpaII CCGG 3 cut(s) 213, 392, 1712
HphI GGTGA 4 cut(s) 146, 583, 727, 1196
Hpy166II GTNNAC 5 cut(s) 228, 414, 600, 1134, 1728
Hpy188III TCNNGA 3 cut(s) 981, 1341, 1496
Hpy8I GTNNAC 5 cut(s) 228, 414, 600, 1134, 1728
Hpy99I CGWCG 1 cut(s) 258
HpyAV CCTTC 3 cut(s) 197, 216, 949
HpyCH4III ACNGT 3 cut(s) 1238, 1604, 1702
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 9 cut(s) 439, 833, 840, 883, 950, 1328, 1351, 1543, 1646
HpyF10VI GCNNNNNNNGC 2 cut(s) 1568, 1665
HpySE526I ACGT 1 cut(s) 58
Hsp92I GRCGYC 1 cut(s) 674
HspAI GCGC 3 cut(s) 251, 1227, 1229
Ksp22I TGATCA 1 cut(s) 330
Kzo9I GATC 4 cut(s) 151, 330, 926, 975
LmnI GCTCC 4 cut(s) 373, 708, 1411, 1656
Lsp1109I GCAGC 4 cut(s) 487, 796, 1583, 1597
LweI GCATC 6 cut(s) 262, 541, 564, 937, 1090, 1214
MaeI CTAG 2 cut(s) 173, 1011
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 3 cut(s) 138, 715, 1275
MalI GATC 4 cut(s) 153, 332, 928, 977
MboI GATC 4 cut(s) 151, 330, 926, 975
MboII GAAGA 7 cut(s) 409, 552, 595, 993, 1201, 1472, 1693
MhlI GDGCHC 2 cut(s) 1018, 1416
MlyI GAGTC 1 cut(s) 993
Mph1103I ATGCAT 1 cut(s) 952
MroXI GAANNNNTTC 1 cut(s) 284
MseI TTAA 4 cut(s) 870, 1080, 1173, 1266
MslI CAYNNNNRTG 3 cut(s) 888, 945, 1239
MspA1I CMGCKG 1 cut(s) 1076
MspI CCGG 3 cut(s) 213, 392, 1712
MspR9I CCNGG 3 cut(s) 213, 579, 1713
Mva1269I GAATGC 3 cut(s) 328, 592, 1543
MvaI CCWGG 1 cut(s) 579
MvnI CGCG 3 cut(s) 253, 488, 1229
MwoI GCNNNNNNNGC 2 cut(s) 1568, 1665
NciI CCSGG 2 cut(s) 213, 1713
NdeII GATC 4 cut(s) 151, 330, 926, 975
NlaIV GGNNCC 2 cut(s) 217, 1294
NmuCI GTSAC 2 cut(s) 138, 715
NsiI ATGCAT 1 cut(s) 952
NspI RCATGY 4 cut(s) 1070, 1332, 1425, 1489
OliI CACNNNNGTG 1 cut(s) 1239
PauI GCGCGC 1 cut(s) 1227
PciI ACATGT 1 cut(s) 1421
PcsI WCGNNNNNNNCGW 1 cut(s) 323
PctI GAATGC 3 cut(s) 328, 592, 1543
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 1 cut(s) 517
PflMI CCANNNNNTGG 2 cut(s) 91, 597
PkrI GCNGC 4 cut(s) 502, 811, 1573, 1612
PleI GAGTC 1 cut(s) 992
PpsI GAGTC 1 cut(s) 992
PscI ACATGT 1 cut(s) 1421
PsiI TTATAA 2 cut(s) 821, 914
Psp6I CCWGG 1 cut(s) 577
PspFI CCCAGC 1 cut(s) 614
PspGI CCWGG 1 cut(s) 577
PspN4I GGNNCC 2 cut(s) 217, 1294
PspPI GGNCC 1 cut(s) 1292
PteI GCGCGC 1 cut(s) 1227
PvuII CAGCTG 1 cut(s) 1076
RsaI GTAC 3 cut(s) 434, 684, 788
RsaNI GTAC 3 cut(s) 433, 683, 787
RseI CAYNNNNRTG 3 cut(s) 888, 945, 1239
SaqAI TTAA 4 cut(s) 870, 1080, 1173, 1266
SatI GCNGC 4 cut(s) 501, 810, 1572, 1611
Sau3AI GATC 4 cut(s) 151, 330, 926, 975
Sau96I GGNCC 1 cut(s) 1292
SchI GAGTC 1 cut(s) 993
ScrFI CCNGG 3 cut(s) 213, 579, 1713
SduI GDGCHC 2 cut(s) 1018, 1416
SfaNI GCATC 6 cut(s) 262, 541, 564, 937, 1090, 1214
SfcI CTRYAG 1 cut(s) 1603
SmiMI CAYNNNNRTG 3 cut(s) 888, 945, 1239
SpeI ACTAGT 1 cut(s) 1010
SsiI CCGC 4 cut(s) 15, 70, 486, 1466
SspMI CTAG 2 cut(s) 173, 1011
StyD4I CCNGG 3 cut(s) 211, 577, 1711
TaaI ACNGT 3 cut(s) 1238, 1604, 1702
TaiI ACGT 1 cut(s) 61
TaqI TCGA 4 cut(s) 288, 929, 1628, 1718
TfiI GAWTC 1 cut(s) 517
Tru1I TTAA 4 cut(s) 870, 1080, 1173, 1266
Tru9I TTAA 4 cut(s) 870, 1080, 1173, 1266
TscAI CASTG 1 cut(s) 147
TseFI GTSAC 2 cut(s) 138, 715
TseI GCWGC 4 cut(s) 500, 809, 1571, 1610
Tsp45I GTSAC 2 cut(s) 138, 715
TspRI CASTG 1 cut(s) 147
Van91I CCANNNNNTGG 2 cut(s) 91, 597
XapI RAATTY 4 cut(s) 730, 853, 931, 1021
XceI RCATGY 4 cut(s) 1070, 1332, 1425, 1489
XcmI CCANNNNNNNNNTGG 1 cut(s) 1555
XmiI GTMKAC 1 cut(s) 1133
XmnI GAANNNNTTC 1 cut(s) 284
XspI CTAG 2 cut(s) 173, 1011
Zsp2I ATGCAT 1 cut(s) 952
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.