Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8223558.1

Orthogroup ID

OG0013048

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 685

Gene Structure 685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8223558.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 670 bp

ctgcgtaggggaaaggagattcatgccgcaactgttaagctgggttttgaaactgatgcctttgtgggtaattctcttattgtcttgtatgccaaatgtggaagtataaatgatggagtggctatatttaagagaattggtgagaagaacattgtctcatggaattcaaccgtcattggatgcgcacaacacggttgtggcaagtgggctttggctctcttcaaccaaatgttacgagcaggtgtagaccccgatgaaattacattcactgggttgctctctgcatgtagccattctgggatgttgcagaaagcaagaggctttttcaaagttgtgtctcagactaaatgtattgaggtcaaaattgagcactatacatgtatggtggatgtcttgggacgatttggtgaattggaagaagcggaggagatgattagaaacatgcctgttcaagaagctaagatggcatggctaactttacttggtgcttgtaggatgcattccaatttggatgtggctgaaagagcagcaaagagcattttcgatatagaaccgaactgtagtgctgcttatattttattgtccaatatatatgcttctgcaaatagatggagtgacgtaagcagaattcgagagaggatgaagtctggtggaactgtaaaacaacccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

223

Amino Acids

24.61

Weight (kDa)

8.62

Isoelectric Point (pI)

49.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46460
fragaria_vesca	FvH4_5g29861 FvH4_5g29861
malus_domestica	MD05G1292000.v1.1
prunus_persica	Prupe.4G073400_v2.0.a1
pyrus_communis	pycom05g26840 pycom10g22400
rosa_chinensis	RchiOBHm_Chr5g0012881
rosa_laevigata	RLG00000031964
rosa_multiflora	Rmu_co8223558.1_g000001 Rmu_sc0010496.1_g000006
rosa_roxburghii	Rroxscaffold_1G00063720
rosa_rugosa	Rorug05G0005000
rosa_samantha	Rh5AG098900 Rh5BG095700 Rh5CG107900 Rh5DG094400
rosa_wichuraiana	Rw5G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	230
Acc16I	TGCGCA	1 cut(s)	184
Acc36I	ACCTGC	1 cut(s)	230
AccI	GTMKAC	1 cut(s)	246
AciI	CCGC	2 cut(s)	27, 422
AcsI	RAATTY	2 cut(s)	163, 627
AflIII	ACRYGT	1 cut(s)	377
AgsI	TTSAA	5 cut(s)	50, 168, 223, 328, 452
AleI	CACNNNNGTG	1 cut(s)	195
AluBI	AGCT	2 cut(s)	40, 458
AluI	AGCT	2 cut(s)	40, 458
Alw21I	GWGCWC	1 cut(s)	372
Alw26I	GTCTC	2 cut(s)	160, 342
ApeKI	GCWGC	2 cut(s)	527, 566
ApoI	RAATTY	2 cut(s)	163, 627
AspLEI	GCGC	1 cut(s)	185
AsuHPI	GGTGA	2 cut(s)	152, 419
Bbv12I	GWGCWC	1 cut(s)	372
BbvI	GCAGC	2 cut(s)	539, 553
BccI	CCATC	3 cut(s)	107, 457, 603
BcoDI	GTCTC	2 cut(s)	160, 342
BfmI	CTRYAG	1 cut(s)	559
BfuAI	ACCTGC	1 cut(s)	230
BisI	GCNGC	3 cut(s)	27, 528, 567
BlsI	GCNGC	3 cut(s)	28, 529, 568
BmrI	ACTGGG	1 cut(s)	279
BmsI	GCATC	3 cut(s)	46, 170, 486
BmuI	ACTGGG	1 cut(s)	279
Bse1I	ACTGG	1 cut(s)	274
BseGI	GGATG	6 cut(s)	185, 306, 394, 501, 517, 645
BseMII	CTCAG	1 cut(s)	353
BseNI	ACTGG	1 cut(s)	274
BseRI	GAGGAG	1 cut(s)	440
BseXI	GCAGC	2 cut(s)	539, 553
BseYI	CCCAGC	1 cut(s)	40
BsiHKAI	GWGCWC	1 cut(s)	372
BslFI	GGGAC	1 cut(s)	411
BsmAI	GTCTC	2 cut(s)	160, 342
BsmFI	GGGAC	1 cut(s)	411
BsmI	GAATGC	1 cut(s)	499
Bsp1286I	GDGCHC	1 cut(s)	372
BspACI	CCGC	2 cut(s)	27, 422
BspCNI	CTCAG	1 cut(s)	352
BspMI	ACCTGC	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	274
Bst4CI	ACNGT	5 cut(s)	34, 172, 194, 560, 658
Bst6I	CTCTTC	1 cut(s)	224
BstDEI	CTNAG	2 cut(s)	339, 459
BstF5I	GGATG	6 cut(s)	185, 306, 394, 501, 517, 645
BstHHI	GCGC	1 cut(s)	185
BstMAI	GTCTC	2 cut(s)	160, 342
BstMWI	GCNNNNNNNGC	2 cut(s)	464, 524
BstNSI	RCATGY	3 cut(s)	288, 381, 445
BstSFI	CTRYAG	1 cut(s)	559
BstV1I	GCAGC	2 cut(s)	539, 553
BtsCI	GGATG	6 cut(s)	185, 306, 394, 501, 517, 645
BtsIMutI	CAGTG	1 cut(s)	267
BveI	ACCTGC	1 cut(s)	230
CfoI	GCGC	1 cut(s)	185
CviAII	CATG	6 cut(s)	23, 159, 285, 378, 442, 468
CviJI	RGCY	9 cut(s)	40, 122, 209, 215, 291, 321, 458, 472, 518
CviKI_1	RGCY	9 cut(s)	40, 122, 209, 215, 291, 321, 458, 472, 518
DdeI	CTNAG	2 cut(s)	339, 459
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
EcoRI	GAATTC	2 cut(s)	163, 627
EcoT22I	ATGCAT	1 cut(s)	501
FaeI	CATG	6 cut(s)	26, 162, 288, 381, 445, 471
FaqI	GGGAC	1 cut(s)	411
FatI	CATG	6 cut(s)	22, 158, 284, 377, 441, 467
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	3 cut(s)	27, 528, 567
FokI	GGATG	6 cut(s)	192, 313, 401, 508, 524, 652
Fsp4HI	GCNGC	3 cut(s)	27, 528, 567
FspAI	RTGCGCAY	1 cut(s)	184
FspI	TGCGCA	1 cut(s)	184
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	3 cut(s)	27, 528, 567
GsaI	CCCAGC	1 cut(s)	44
HhaI	GCGC	1 cut(s)	185
Hin1II	CATG	6 cut(s)	26, 162, 288, 381, 445, 471
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HinfI	GANTC	1 cut(s)	19
HphI	GGTGA	2 cut(s)	152, 419
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	1 cut(s)	342
Hpy188III	TCNNGA	2 cut(s)	452, 632
Hpy8I	GTNNAC	1 cut(s)	247
HpyCH4III	ACNGT	5 cut(s)	34, 172, 194, 560, 658
HpyCH4IV	ACGT	1 cut(s)	618
HpyCH4V	TGCA	4 cut(s)	284, 307, 499, 602
HpyF10VI	GCNNNNNNNGC	2 cut(s)	464, 524
HpyF3I	CTNAG	2 cut(s)	339, 459
HpySE526I	ACGT	1 cut(s)	618
Hsp92II	CATG	6 cut(s)	26, 162, 288, 381, 445, 471
HspAI	GCGC	1 cut(s)	183
LpnPI	CCDG	6 cut(s)	26, 225, 255, 282, 459, 633
Lsp1109I	GCAGC	2 cut(s)	539, 553
LweI	GCATC	3 cut(s)	46, 170, 486
MaeII	ACGT	1 cut(s)	618
MaeIII	GTNAC	2 cut(s)	231, 614
MboII	GAAGA	3 cut(s)	157, 211, 428
MhlI	GDGCHC	1 cut(s)	372
MluCI	AATT	8 cut(s)	70, 135, 163, 258, 363, 410, 505, 627
MnlI	CCTC	4 cut(s)	311, 349, 418, 630
Mph1103I	ATGCAT	1 cut(s)	501
MseI	TTAA	2 cut(s)	36, 129
MslI	CAYNNNNRTG	1 cut(s)	195
Mva1269I	GAATGC	1 cut(s)	499
MwoI	GCNNNNNNNGC	2 cut(s)	464, 524
NlaIII	CATG	6 cut(s)	26, 162, 288, 381, 445, 471
NmuCI	GTSAC	1 cut(s)	614
NsbI	TGCGCA	1 cut(s)	184
NsiI	ATGCAT	1 cut(s)	501
NspI	RCATGY	3 cut(s)	288, 381, 445
OliI	CACNNNNGTG	1 cut(s)	195
PaqCI	CACCTGC	1 cut(s)	230
PciI	ACATGT	1 cut(s)	377
PctI	GAATGC	1 cut(s)	499
PfeI	GAWTC	1 cut(s)	19
PkrI	GCNGC	3 cut(s)	28, 529, 568
PscI	ACATGT	1 cut(s)	377
PspFI	CCCAGC	1 cut(s)	40
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	2 cut(s)	36, 129
SatI	GCNGC	3 cut(s)	27, 528, 567
SduI	GDGCHC	1 cut(s)	372
SetI	ASST	5 cut(s)	42, 244, 360, 460, 621
SfaNI	GCATC	3 cut(s)	46, 170, 486
SfcI	CTRYAG	1 cut(s)	559
SmiMI	CAYNNNNRTG	1 cut(s)	195
Sse9I	AATT	8 cut(s)	70, 135, 163, 258, 363, 410, 505, 627
SsiI	CCGC	2 cut(s)	27, 422
TaaI	ACNGT	5 cut(s)	34, 172, 194, 560, 658
TaiI	ACGT	1 cut(s)	621
TaqI	TCGA	2 cut(s)	543, 631
TasI	AATT	8 cut(s)	70, 135, 163, 258, 363, 410, 505, 627
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	2 cut(s)	36, 129
Tru9I	TTAA	2 cut(s)	36, 129
TscAI	CASTG	1 cut(s)	274
TseFI	GTSAC	1 cut(s)	614
TseI	GCWGC	2 cut(s)	527, 566
Tsp45I	GTSAC	1 cut(s)	614
TspDTI	ATGAA	3 cut(s)	11, 270, 656
TspRI	CASTG	1 cut(s)	274
XapI	RAATTY	2 cut(s)	163, 627
XceI	RCATGY	3 cut(s)	288, 381, 445
XcmI	CCANNNNNNNNNTGG	1 cut(s)	511
XmiI	GTMKAC	1 cut(s)	246
Zsp2I	ATGCAT	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.