Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G46460 |
| fragaria_vesca | FvH4_5g29861 FvH4_5g29861 |
| malus_domestica | MD05G1292000.v1.1 |
| prunus_persica | Prupe.4G073400_v2.0.a1 |
| pyrus_communis | pycom05g26840 pycom10g22400 |
| rosa_chinensis | RchiOBHm_Chr5g0012881 |
| rosa_laevigata | RLG00000031964 |
| rosa_multiflora | Rmu_co8223558.1_g000001 Rmu_sc0010496.1_g000006 |
| rosa_roxburghii | Rroxscaffold_1G00063720 |
| rosa_rugosa | Rorug05G0005000 |
| rosa_samantha | Rh5AG098900 Rh5BG095700 Rh5CG107900 Rh5DG094400 |
| rosa_wichuraiana | Rw5G008650 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 830 |
| AccII | CGCG | 1 cut(s) | 842 |
| AciI | CCGC | 2 cut(s) | 15, 484 |
| AcsI | RAATTY | 6 cut(s) | 331, 517, 739, 862, 1030, 1680 |
| AfaI | GTAC | 4 cut(s) | 236, 693, 797, 1291 |
| AfeI | AGCGCT | 1 cut(s) | 476 |
| AflII | CTTAAG | 1 cut(s) | 166 |
| AhlI | ACTAGT | 1 cut(s) | 1019 |
| AjnI | CCWGG | 2 cut(s) | 400, 1720 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 335, 367, 994, 1026 |
| Alw21I | GWGCWC | 2 cut(s) | 1240, 1425 |
| Alw26I | GTCTC | 2 cut(s) | 256, 721 |
| Alw44I | GTGCAC | 1 cut(s) | 1236 |
| Aor51HI | AGCGCT | 1 cut(s) | 476 |
| ApaLI | GTGCAC | 1 cut(s) | 1236 |
| ApeKI | GCWGC | 3 cut(s) | 818, 1393, 1580 |
| ApoI | RAATTY | 6 cut(s) | 331, 517, 739, 862, 1030, 1680 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 293, 440 |
| AspLEI | GCGC | 1 cut(s) | 477 |
| AsuC2I | CCSGG | 1 cut(s) | 625 |
| AsuHPI | GGTGA | 5 cut(s) | 467, 508, 736, 1205, 1423 |
| BaeGI | GKGCMC | 1 cut(s) | 1240 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 526, 559 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 645, 677 |
| BbsI | GAAGAC | 1 cut(s) | 1002 |
| Bbv12I | GWGCWC | 2 cut(s) | 1240, 1425 |
| BbvI | GCAGC | 3 cut(s) | 805, 1405, 1567 |
| BccI | CCATC | 7 cut(s) | 145, 386, 460, 673, 1160, 1510, 1656 |
| BciT130I | CCWGG | 2 cut(s) | 402, 1722 |
| BciVI | GTATCC | 1 cut(s) | 527 |
| BclI | TGATCA | 1 cut(s) | 160 |
| BcnI | CCSGG | 1 cut(s) | 625 |
| BcoDI | GTCTC | 2 cut(s) | 256, 721 |
| BcuI | ACTAGT | 1 cut(s) | 1019 |
| BfaI | CTAG | 2 cut(s) | 197, 1020 |
| BfmI | CTRYAG | 1 cut(s) | 1612 |
| BfoI | RGCGCY | 1 cut(s) | 478 |
| BfrI | CTTAAG | 1 cut(s) | 166 |
| BfuI | GTATCC | 1 cut(s) | 527 |
| BglII | AGATCT | 1 cut(s) | 1051 |
| BisI | GCNGC | 3 cut(s) | 819, 1394, 1581 |
| BlsI | GCNGC | 3 cut(s) | 820, 1395, 1582 |
| Bme1390I | CCNGG | 3 cut(s) | 402, 625, 1722 |
| BmiI | GGNNCC | 2 cut(s) | 173, 1726 |
| BmrFI | CCNGG | 3 cut(s) | 402, 625, 1722 |
| BmsI | GCATC | 5 cut(s) | 271, 480, 550, 1539, 1609 |
| BpiI | GAAGAC | 1 cut(s) | 1002 |
| Bpu10I | CCTNAGC | 1 cut(s) | 378 |
| BpuEI | CTTGAG | 1 cut(s) | 1439 |
| BpuMI | CCSGG | 1 cut(s) | 625 |
| BsaAI | YACGTR | 1 cut(s) | 1289 |
| BsaWI | WCCGGW | 1 cut(s) | 1606 |
| Bse118I | RCCGGY | 1 cut(s) | 493 |
| BseBI | CCWGG | 2 cut(s) | 402, 1722 |
| BseGI | GGATG | 6 cut(s) | 508, 655, 1238, 1359, 1447, 1570 |
| BseRI | GAGGAG | 1 cut(s) | 1493 |
| BseSI | GKGCMC | 1 cut(s) | 1240 |
| BseXI | GCAGC | 3 cut(s) | 805, 1405, 1567 |
| BseYI | CCCAGC | 1 cut(s) | 1731 |
| Bsh1236I | CGCG | 1 cut(s) | 842 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1240, 1425 |
| BsiSI | CCGG | 3 cut(s) | 494, 624, 1607 |
| BslFI | GGGAC | 1 cut(s) | 989 |
| BsmAI | GTCTC | 2 cut(s) | 256, 721 |
| BsmFI | GGGAC | 1 cut(s) | 989 |
| BsmI | GAATGC | 2 cut(s) | 402, 1552 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1240, 1425 |
| Bsp1407I | TGTACA | 2 cut(s) | 234, 691 |
| Bsp143I | GATC | 2 cut(s) | 160, 1051 |
| BspACI | CCGC | 2 cut(s) | 15, 484 |
| BspFNI | CGCG | 1 cut(s) | 842 |
| BspLI | GGNNCC | 2 cut(s) | 173, 1726 |
| BspTI | CTTAAG | 1 cut(s) | 166 |
| BsrFI | RCCGGY | 1 cut(s) | 493 |
| BsrGI | TGTACA | 2 cut(s) | 234, 691 |
| BssAI | RCCGGY | 1 cut(s) | 493 |
| BssMI | GATC | 2 cut(s) | 160, 1051 |
| Bst2UI | CCWGG | 2 cut(s) | 402, 1722 |
| Bst4CI | ACNGT | 4 cut(s) | 294, 322, 1613, 1711 |
| BstAFI | CTTAAG | 1 cut(s) | 166 |
| BstAUI | TGTACA | 2 cut(s) | 234, 691 |
| BstBAI | YACGTR | 1 cut(s) | 1289 |
| BstC8I | GCNNGC | 2 cut(s) | 851, 1506 |
| BstDEI | CTNAG | 4 cut(s) | 5, 378, 1447, 1535 |
| BstF5I | GGATG | 6 cut(s) | 508, 655, 1238, 1359, 1447, 1570 |
| BstFNI | CGCG | 1 cut(s) | 842 |
| BstH2I | RGCGCY | 1 cut(s) | 478 |
| BstHHI | GCGC | 1 cut(s) | 477 |
| BstKTI | GATC | 2 cut(s) | 163, 1054 |
| BstMAI | GTCTC | 2 cut(s) | 256, 721 |
| BstMBI | GATC | 2 cut(s) | 160, 1051 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 483, 1577 |
| BstNI | CCWGG | 2 cut(s) | 402, 1722 |
| BstNSI | RCATGY | 4 cut(s) | 1258, 1341, 1434, 1498 |
| BstSCI | CCNGG | 3 cut(s) | 400, 623, 1720 |
| BstSFI | CTRYAG | 1 cut(s) | 1612 |
| BstSLI | GKGCMC | 1 cut(s) | 1240 |
| BstSNI | TACGTA | 1 cut(s) | 1289 |
| BstUI | CGCG | 1 cut(s) | 842 |
| BstV1I | GCAGC | 3 cut(s) | 805, 1405, 1567 |
| BstV2I | GAAGAC | 1 cut(s) | 1002 |
| BstX2I | RGATCY | 1 cut(s) | 1051 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 100, 1516 |
| BstYI | RGATCY | 1 cut(s) | 1051 |
| BsuI | GTATCC | 1 cut(s) | 527 |
| BtsCI | GGATG | 6 cut(s) | 508, 655, 1238, 1359, 1447, 1570 |
| BtsI | GCAGTG | 1 cut(s) | 149 |
| BtsIMutI | CAGTG | 2 cut(s) | 149, 327 |
| Cac8I | GCNNGC | 2 cut(s) | 851, 1506 |
| CfoI | GCGC | 1 cut(s) | 477 |
| Cfr10I | RCCGGY | 1 cut(s) | 493 |
| CseI | GACGC | 1 cut(s) | 1380 |
| CsiI | ACCWGGT | 1 cut(s) | 1720 |
| Csp6I | GTAC | 4 cut(s) | 235, 692, 796, 1290 |
| CviQI | GTAC | 4 cut(s) | 235, 692, 796, 1290 |
| DdeI | CTNAG | 4 cut(s) | 5, 378, 1447, 1535 |
| DpnI | GATC | 2 cut(s) | 162, 1053 |
| DpnII | GATC | 2 cut(s) | 160, 1051 |
| Eco105I | TACGTA | 1 cut(s) | 1289 |
| Eco47III | AGCGCT | 1 cut(s) | 476 |
| EcoRI | GAATTC | 5 cut(s) | 331, 517, 862, 1030, 1680 |
| EcoRII | CCWGG | 2 cut(s) | 400, 1720 |
| EcoT22I | ATGCAT | 2 cut(s) | 1432, 1554 |
| FaqI | GGGAC | 1 cut(s) | 989 |
| FauI | CCCGC | 1 cut(s) | 22 |
| FbaI | TGATCA | 1 cut(s) | 160 |
| Fnu4HI | GCNGC | 3 cut(s) | 819, 1394, 1581 |
| FokI | GGATG | 6 cut(s) | 515, 662, 1245, 1366, 1454, 1577 |
| Fsp4HI | GCNGC | 3 cut(s) | 819, 1394, 1581 |
| FspBI | CTAG | 2 cut(s) | 197, 1020 |
| GlaI | GCGC | 1 cut(s) | 476 |
| GluI | GCNGC | 3 cut(s) | 819, 1394, 1581 |
| GsaI | CCCAGC | 1 cut(s) | 1735 |
| HaeII | RGCGCY | 1 cut(s) | 478 |
| HapII | CCGG | 3 cut(s) | 494, 624, 1607 |
| HgaI | GACGC | 1 cut(s) | 1380 |
| HhaI | GCGC | 1 cut(s) | 477 |
| Hin6I | GCGC | 1 cut(s) | 475 |
| HinP1I | GCGC | 1 cut(s) | 475 |
| HinfI | GANTC | 4 cut(s) | 36, 769, 1072, 1267 |
| HpaII | CCGG | 3 cut(s) | 494, 624, 1607 |
| HphI | GGTGA | 5 cut(s) | 467, 508, 736, 1205, 1423 |
| Hpy166II | GTNNAC | 7 cut(s) | 237, 609, 692, 752, 890, 947, 1238 |
| Hpy188I | TCNGA | 8 cut(s) | 64, 160, 222, 288, 465, 768, 780, 1548 |
| Hpy188III | TCNNGA | 4 cut(s) | 261, 1055, 1304, 1685 |
| Hpy8I | GTNNAC | 7 cut(s) | 237, 609, 692, 752, 890, 947, 1238 |
| Hpy99I | CGWCG | 1 cut(s) | 430 |
| HpyAV | CCTTC | 2 cut(s) | 1007, 1738 |
| HpyCH4III | ACNGT | 4 cut(s) | 294, 322, 1613, 1711 |
| HpyCH4IV | ACGT | 1 cut(s) | 1288 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 483, 1577 |
| HpyF3I | CTNAG | 4 cut(s) | 5, 378, 1447, 1535 |
| HpySE526I | ACGT | 1 cut(s) | 1288 |
| HspAI | GCGC | 1 cut(s) | 475 |
| Ksp22I | TGATCA | 1 cut(s) | 160 |
| Kzo9I | GATC | 2 cut(s) | 160, 1051 |
| LmnI | GCTCC | 2 cut(s) | 382, 1480 |
| Lsp1109I | GCAGC | 3 cut(s) | 805, 1405, 1567 |
| LweI | GCATC | 5 cut(s) | 271, 480, 550, 1539, 1609 |
| MabI | ACCWGGT | 1 cut(s) | 1720 |
| MaeI | CTAG | 2 cut(s) | 197, 1020 |
| MaeII | ACGT | 1 cut(s) | 1288 |
| MaeIII | GTNAC | 3 cut(s) | 147, 1193, 1735 |
| MalI | GATC | 2 cut(s) | 162, 1053 |
| MboI | GATC | 2 cut(s) | 160, 1051 |
| MboII | GAAGA | 5 cut(s) | 569, 965, 1002, 1061, 1702 |
| MflI | RGATCY | 1 cut(s) | 1051 |
| MhlI | GDGCHC | 2 cut(s) | 1240, 1425 |
| MlyI | GAGTC | 1 cut(s) | 1261 |
| MmeI | TCCRAC | 3 cut(s) | 308, 1210, 1446 |
| MnlI | CCTC | 5 cut(s) | 492, 636, 1402, 1462, 1471 |
| Mph1103I | ATGCAT | 2 cut(s) | 1432, 1554 |
| MroXI | GAANNNNTTC | 2 cut(s) | 293, 440 |
| MseI | TTAA | 8 cut(s) | 167, 368, 576, 923, 962, 1089, 1182, 1275 |
| MslI | CAYNNNNRTG | 6 cut(s) | 242, 759, 897, 1248, 1401, 1499 |
| MspA1I | CMGCKG | 1 cut(s) | 1731 |
| MspCI | CTTAAG | 1 cut(s) | 166 |
| MspI | CCGG | 3 cut(s) | 494, 624, 1607 |
| MspR9I | CCNGG | 3 cut(s) | 402, 625, 1722 |
| Mva1269I | GAATGC | 2 cut(s) | 402, 1552 |
| MvaI | CCWGG | 2 cut(s) | 402, 1722 |
| MvnI | CGCG | 1 cut(s) | 842 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 483, 1577 |
| NciI | CCSGG | 1 cut(s) | 625 |
| NdeII | GATC | 2 cut(s) | 160, 1051 |
| NlaIV | GGNNCC | 2 cut(s) | 173, 1726 |
| NmuCI | GTSAC | 2 cut(s) | 147, 1193 |
| NsiI | ATGCAT | 2 cut(s) | 1432, 1554 |
| NspI | RCATGY | 4 cut(s) | 1258, 1341, 1434, 1498 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 257, 611 |
| PctI | GAATGC | 2 cut(s) | 402, 1552 |
| PdmI | GAANNNNTTC | 2 cut(s) | 293, 440 |
| PfeI | GAWTC | 3 cut(s) | 36, 769, 1072 |
| PkrI | GCNGC | 3 cut(s) | 820, 1395, 1582 |
| PleI | GAGTC | 1 cut(s) | 1261 |
| PpsI | GAGTC | 1 cut(s) | 1261 |
| Ppu21I | YACGTR | 1 cut(s) | 1289 |
| PsiI | TTATAA | 1 cut(s) | 830 |
| Psp6I | CCWGG | 2 cut(s) | 400, 1720 |
| PspFI | CCCAGC | 1 cut(s) | 1731 |
| PspGI | CCWGG | 2 cut(s) | 400, 1720 |
| PspN4I | GGNNCC | 2 cut(s) | 173, 1726 |
| PsuI | RGATCY | 1 cut(s) | 1051 |
| PvuII | CAGCTG | 1 cut(s) | 1731 |
| RsaI | GTAC | 4 cut(s) | 236, 693, 797, 1291 |
| RsaNI | GTAC | 4 cut(s) | 235, 692, 796, 1290 |
| RseI | CAYNNNNRTG | 6 cut(s) | 242, 759, 897, 1248, 1401, 1499 |
| SaqAI | TTAA | 8 cut(s) | 167, 368, 576, 923, 962, 1089, 1182, 1275 |
| SatI | GCNGC | 3 cut(s) | 819, 1394, 1581 |
| Sau3AI | GATC | 2 cut(s) | 160, 1051 |
| SchI | GAGTC | 1 cut(s) | 1261 |
| ScrFI | CCNGG | 3 cut(s) | 402, 625, 1722 |
| SduI | GDGCHC | 2 cut(s) | 1240, 1425 |
| SexAI | ACCWGGT | 1 cut(s) | 1720 |
| SfaNI | GCATC | 5 cut(s) | 271, 480, 550, 1539, 1609 |
| SfcI | CTRYAG | 1 cut(s) | 1612 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 242, 759, 897, 1248, 1401, 1499 |
| SmlI | CTYRAG | 2 cut(s) | 166, 1418 |
| SmoI | CTYRAG | 2 cut(s) | 166, 1418 |
| SnaBI | TACGTA | 1 cut(s) | 1289 |
| SpeI | ACTAGT | 1 cut(s) | 1019 |
| SsiI | CCGC | 2 cut(s) | 15, 484 |
| SspI | AATATT | 1 cut(s) | 1204 |
| SspMI | CTAG | 2 cut(s) | 197, 1020 |
| StyD4I | CCNGG | 3 cut(s) | 400, 623, 1720 |
| TaaI | ACNGT | 4 cut(s) | 294, 322, 1613, 1711 |
| TaiI | ACGT | 1 cut(s) | 1291 |
| TaqI | TCGA | 3 cut(s) | 260, 614, 1684 |
| TatI | WGTACW | 2 cut(s) | 234, 691 |
| TfiI | GAWTC | 3 cut(s) | 36, 769, 1072 |
| Tru1I | TTAA | 8 cut(s) | 167, 368, 576, 923, 962, 1089, 1182, 1275 |
| Tru9I | TTAA | 8 cut(s) | 167, 368, 576, 923, 962, 1089, 1182, 1275 |
| TscAI | CASTG | 2 cut(s) | 156, 327 |
| TseFI | GTSAC | 2 cut(s) | 147, 1193 |
| TseI | GCWGC | 3 cut(s) | 818, 1393, 1580 |
| Tsp45I | GTSAC | 2 cut(s) | 147, 1193 |
| TspGWI | ACGGA | 1 cut(s) | 662 |
| TspRI | CASTG | 2 cut(s) | 156, 327 |
| Vha464I | CTTAAG | 1 cut(s) | 166 |
| VneI | GTGCAC | 1 cut(s) | 1236 |
| XapI | RAATTY | 6 cut(s) | 331, 517, 739, 862, 1030, 1680 |
| XceI | RCATGY | 4 cut(s) | 1258, 1341, 1434, 1498 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 100, 1564 |
| XmnI | GAANNNNTTC | 2 cut(s) | 293, 440 |
| XspI | CTAG | 2 cut(s) | 197, 1020 |
| Zsp2I | ATGCAT | 2 cut(s) | 1432, 1554 |