FvH4_5g30220

Protein BYPASS1-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011567
Physical Location & Seq
Reverse (-)
21124146 .. 21126565
2420 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g30220.t1

Sequence Viewer

Length: 1185 bp
ATGCCTTCTACACATAATCCTGCAACAGGTTCTTCTTCACCTTTGACTTCATTAGGTCGCTCCATTTGGACTCGGCGAGAACAGTTTCATTCAATTGAAACTAATCATGAGTCTAGTGCCCAGGAGTTGGAGCTTCAGTCTTTTCAGAAACATGTTGCAGACCTATTCCATGACTTGTCAGCTGTTGGTGCTGATGAGCTGCTCTCTATTGCGTGGACTCTGAAGCTTTTAGATGTTTTTGTCAGCTGCCTAGAAGAATTCAGAGGTATCTTTCTGAAGAACAAAGAATATATTTCTAAACCGCCCATGGACCATTGGATTGATGAATATTTAGAAAGGAGTTTGAAGGCACTTGACATTTGCAATGCATCACGTGATGGGATTGAGAAGATTCGTATGTGGCATAAGCATTTAGAGATTGTTCTGTGTGCCTTGGATTCTCGCCAGAGGGCATATTGTGAGGGCCAATTCCGTCGAGCAAGAAAGGCTTTGATGGATTTGGCACTTGAAATGCTTGATGGGAGAGACTCTGGCTCTGCATTTTCACAGCGGAACTGGTCTTTTGGGCGTCACAACACAAGAAAGGATCGCCACCGCCATACCTCATCAGGACATTCTCGCTCTCACTCATGGAGCACATCTGCTTCTTGGTCTGCAGCTAAGCAGCTGCAATCAATTGCAAACAACCTGGTAGCACCTCGTGGAAATGAGAATGCTGCAACCAATGGCCTCGCAGGATCTGTATTCACAATGAGTTCTGTGCTCATTTTTGTTATGTCGTCACTTGTGGCTGCAATACCTTGTCAGGATCGAGGTCTTAATACTCATTTTTCCATTCCACCACAGTTTCCCTGGGGTATCCCCCTAATTTCACTTCACGAACGGATAATGGAAGAATCTAAAAAGCGGGAGCGTCAGAGCTCCAACGGATTGCTGAAGGAGATTTATCAGGTTGAGAAATGCACTCGTCAGATGACAGACTTTGCTGATCTGGTTCAATTCCCATTGACAGAGGAACAGAAAATGGAACTTGAACAAGTACTTGAGGAGCTAGCGTCGATCTGTGAGAAGTTTAAGAATGGATTGGGTCCATTGGAACGCCAAATTCGGGATGTATTCCGCAGGATTATGAATTGCCGAACTGAGGGTCTTGAACTGTTGAGTAAGGCTACCAATCTGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1

Protein Analysis

395

Amino Acids

44.93

Weight (kDa)

6.96

Isoelectric Point (pI)

47.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ROH1-like PF05633 19 - 387 8.6e-133 Protein ROH1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 127
AciI CCGC 5 cut(s) 302, 550, 595, 907, 1120
AclWI GGATC 3 cut(s) 594, 745, 816
AcsI RAATTY 2 cut(s) 257, 1104
AcuI CTGAAG 4 cut(s) 119, 242, 296, 956
AcvI CACGTG 1 cut(s) 374
AcyI GRCGYC 1 cut(s) 568
AdeI CACNNNGTG 1 cut(s) 701
AfaI GTAC 1 cut(s) 1041
AfiI CCNNNNNNNGG 4 cut(s) 26, 127, 1108, 1144
AflIII ACRYGT 1 cut(s) 151
AgsI TTSAA 7 cut(s) 93, 98, 346, 509, 998, 1034, 1154
AjnI CCWGG 3 cut(s) 120, 687, 851
AluBI AGCT 9 cut(s) 133, 182, 199, 226, 246, 659, 667, 921, 1051
AluI AGCT 9 cut(s) 133, 182, 199, 226, 246, 659, 667, 921, 1051
Alw21I GWGCWC 3 cut(s) 638, 765, 923
Alw26I GTCTC 1 cut(s) 519
AlwI GGATC 3 cut(s) 594, 745, 816
AlwNI CAGNNNCTG 1 cut(s) 740
AoxI GGCC 2 cut(s) 463, 727
ApeKI GCWGC 7 cut(s) 199, 246, 656, 664, 667, 716, 791
ApoI RAATTY 2 cut(s) 257, 1104
ArsI GACNNNNNNTTYG 2 cut(s) 1132, 1164
Asp700I GAANNNNTTC 1 cut(s) 84
AspS9I GGNCC 3 cut(s) 310, 463, 1088
AsuHPI GGTGA 1 cut(s) 30
AsuNHI GCTAGC 1 cut(s) 1051
AvaII GGWCC 2 cut(s) 310, 1088
BaeGI GKGCMC 1 cut(s) 121
BanII GRGCYC 1 cut(s) 923
BauI CACGAG 1 cut(s) 699
BbrPI CACGTG 1 cut(s) 374
Bbv12I GWGCWC 3 cut(s) 638, 765, 923
BbvI GCAGC 7 cut(s) 186, 233, 654, 668, 676, 703, 778
BccI CCATC 3 cut(s) 371, 487, 512
BciT130I CCWGG 3 cut(s) 122, 689, 853
BciVI GTATCC 1 cut(s) 869
BcoDI GTCTC 1 cut(s) 519
BfaI CTAG 3 cut(s) 114, 251, 1052
BfmI CTRYAG 1 cut(s) 654
BfuI GTATCC 1 cut(s) 869
BisI GCNGC 7 cut(s) 200, 247, 657, 665, 668, 717, 792
BlpI GCTNAGC 1 cut(s) 660
BlsI GCNGC 7 cut(s) 201, 248, 658, 666, 669, 718, 793
BmcAI AGTACT 1 cut(s) 1041
Bme1390I CCNGG 3 cut(s) 122, 689, 853
Bme18I GGWCC 2 cut(s) 310, 1088
BmgT120I GGNCC 3 cut(s) 310, 463, 1088
BmiI GGNNCC 1 cut(s) 1089
BmrFI CCNGG 3 cut(s) 122, 689, 853
BmsI GCATC 1 cut(s) 377
BmtI GCTAGC 1 cut(s) 1055
BplI GAGNNNNNCTC 2 cut(s) 188, 220
Bpu1102I GCTNAGC 1 cut(s) 660
BpuEI CTTGAG 1 cut(s) 1064
BsaAI YACGTR 1 cut(s) 374
BsaHI GRCGYC 1 cut(s) 568
BsaJI CCNNGG 5 cut(s) 120, 306, 432, 851, 852
BsaXI ACNNNNNCTCC 4 cut(s) 122, 152, 1040, 1070
Bsc4I CCNNNNNNNGG 4 cut(s) 26, 127, 1108, 1144
Bse1I ACTGG 1 cut(s) 560
Bse3DI GCAATG 1 cut(s) 370
BseBI CCWGG 3 cut(s) 122, 689, 853
BseDI CCNNGG 5 cut(s) 120, 306, 432, 851, 852
BseGI GGATG 1 cut(s) 1117
BseLI CCNNNNNNNGG 4 cut(s) 26, 127, 1108, 1144
BseMI GCAATG 1 cut(s) 370
BseMII CTCAG 1 cut(s) 1134
BseNI ACTGG 1 cut(s) 560
BseRI GAGGAG 1 cut(s) 1061
BseSI GKGCMC 1 cut(s) 121
BseXI GCAGC 7 cut(s) 186, 233, 654, 668, 676, 703, 778
BshFI GGCC 2 cut(s) 465, 729
BsiHKAI GWGCWC 3 cut(s) 638, 765, 923
BslI CCNNNNNNNGG 4 cut(s) 26, 127, 1108, 1144
BsmAI GTCTC 1 cut(s) 519
BsmI GAATGC 1 cut(s) 718
BsnI GGCC 2 cut(s) 465, 729
Bsp1286I GDGCHC 4 cut(s) 121, 638, 765, 923
Bsp143I GATC 5 cut(s) 586, 737, 808, 988, 1059
Bsp1720I GCTNAGC 1 cut(s) 660
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 5 cut(s) 302, 550, 595, 907, 1120
BspANI GGCC 2 cut(s) 465, 729
BspCNI CTCAG 1 cut(s) 1135
BspHI TCATGA 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 1089
BspMAI CTGCAG 1 cut(s) 658
BspOI GCTAGC 1 cut(s) 1055
BspPI GGATC 3 cut(s) 594, 745, 816
BsrDI GCAATG 1 cut(s) 370
BsrI ACTGG 1 cut(s) 560
BssECI CCNNGG 5 cut(s) 120, 306, 432, 851, 852
BssMI GATC 5 cut(s) 586, 737, 808, 988, 1059
BssNI GRCGYC 1 cut(s) 568
BssSI CACGAG 1 cut(s) 699
BssT1I CCWWGG 2 cut(s) 306, 432
Bst2BI CACGAG 1 cut(s) 699
Bst2UI CCWGG 3 cut(s) 122, 689, 853
Bst4CI ACNGT 3 cut(s) 84, 846, 1158
BstACI GRCGYC 1 cut(s) 568
BstBAI YACGTR 1 cut(s) 374
BstC8I GCNNGC 1 cut(s) 1053
BstDEI CTNAG 2 cut(s) 660, 1143
BstDSI CCRYGG 1 cut(s) 306
BstENI CCTNNNNNAGG 1 cut(s) 24
BstF5I GGATG 1 cut(s) 1117
BstKTI GATC 5 cut(s) 589, 740, 811, 991, 1062
BstMAI GTCTC 1 cut(s) 519
BstMBI GATC 5 cut(s) 586, 737, 808, 988, 1059
BstMWI GCNNNNNNNGC 2 cut(s) 188, 485
BstNI CCWGG 3 cut(s) 122, 689, 853
BstNSI RCATGY 1 cut(s) 155
BstSCI CCNGG 3 cut(s) 120, 687, 851
BstSFI CTRYAG 1 cut(s) 654
BstSLI GKGCMC 1 cut(s) 121
BstV1I GCAGC 7 cut(s) 186, 233, 654, 668, 676, 703, 778
BstX2I RGATCY 1 cut(s) 737
BstYI RGATCY 1 cut(s) 737
BsuI GTATCC 1 cut(s) 869
BsuRI GGCC 2 cut(s) 465, 729
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 1 cut(s) 1117
Cac8I GCNNGC 1 cut(s) 1053
CaiI CAGNNNCTG 1 cut(s) 740
CciI TCATGA 1 cut(s) 106
Cfr13I GGNCC 3 cut(s) 310, 463, 1088
CseI GACGC 3 cut(s) 557, 902, 1044
CsiI ACCWGGT 1 cut(s) 687
Csp6I GTAC 1 cut(s) 1040
CviAII CATG 5 cut(s) 107, 152, 170, 307, 630
CviQI GTAC 1 cut(s) 1040
DdeI CTNAG 2 cut(s) 660, 1143
DpnI GATC 5 cut(s) 588, 739, 810, 990, 1061
DpnII GATC 5 cut(s) 586, 737, 808, 988, 1059
DraIII CACNNNGTG 1 cut(s) 701
Ecl136II GAGCTC 1 cut(s) 921
Eco130I CCWWGG 2 cut(s) 306, 432
Eco24I GRGCYC 1 cut(s) 923
Eco47I GGWCC 2 cut(s) 310, 1088
Eco53kI GAGCTC 1 cut(s) 921
Eco57I CTGAAG 4 cut(s) 119, 242, 296, 956
Eco72I CACGTG 1 cut(s) 374
EcoICRI GAGCTC 1 cut(s) 921
EcoNI CCTNNNNNAGG 1 cut(s) 24
EcoRI GAATTC 1 cut(s) 257
EcoRII CCWGG 3 cut(s) 120, 687, 851
EcoT14I CCWWGG 2 cut(s) 306, 432
EcoT22I ATGCAT 1 cut(s) 370
EcoT38I GRGCYC 1 cut(s) 923
ErhI CCWWGG 2 cut(s) 306, 432
FaeI CATG 5 cut(s) 110, 155, 173, 310, 633
FalI AAGNNNNNCTT 2 cut(s) 472, 504
FatI CATG 5 cut(s) 106, 151, 169, 306, 629
FauI CCCGC 1 cut(s) 900
Fnu4HI GCNGC 7 cut(s) 200, 247, 657, 665, 668, 717, 792
FokI GGATG 1 cut(s) 1124
FriOI GRGCYC 1 cut(s) 923
Fsp4HI GCNGC 7 cut(s) 200, 247, 657, 665, 668, 717, 792
FspBI CTAG 3 cut(s) 114, 251, 1052
GluI GCNGC 7 cut(s) 200, 247, 657, 665, 668, 717, 792
HaeIII GGCC 2 cut(s) 465, 729
HgaI GACGC 3 cut(s) 557, 902, 1044
Hin1I GRCGYC 1 cut(s) 568
Hin1II CATG 5 cut(s) 110, 155, 173, 310, 633
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 7 cut(s) 70, 110, 217, 391, 437, 527, 896
HphI GGTGA 1 cut(s) 30
Hpy166II GTNNAC 1 cut(s) 216
Hpy188I TCNGA 6 cut(s) 147, 222, 263, 276, 918, 972
Hpy188III TCNNGA 7 cut(s) 107, 609, 806, 878, 1109, 1151, 1178
Hpy8I GTNNAC 1 cut(s) 216
Hpy99I CGWCG 2 cut(s) 477, 1060
HpyAV CCTTC 3 cut(s) 15, 340, 931
HpyCH4III ACNGT 3 cut(s) 84, 846, 1158
HpyCH4IV ACGT 1 cut(s) 373
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 485
HpyF3I CTNAG 2 cut(s) 660, 1143
HpySE526I ACGT 1 cut(s) 373
Hsp92I GRCGYC 1 cut(s) 568
Hsp92II CATG 5 cut(s) 110, 155, 173, 310, 633
Kzo9I GATC 5 cut(s) 586, 737, 808, 988, 1059
LmnI GCTCC 6 cut(s) 65, 130, 633, 910, 926, 1048
Lsp1109I GCAGC 7 cut(s) 186, 233, 654, 668, 676, 703, 778
LweI GCATC 1 cut(s) 377
MabI ACCWGGT 1 cut(s) 687
MaeI CTAG 3 cut(s) 114, 251, 1052
MaeII ACGT 1 cut(s) 373
MaeIII GTNAC 2 cut(s) 569, 780
MalI GATC 5 cut(s) 588, 739, 810, 990, 1061
MboI GATC 5 cut(s) 586, 737, 808, 988, 1059
MboII GAAGA 6 cut(s) 24, 27, 266, 289, 400, 905
MfeI CAATTG 2 cut(s) 93, 675
MflI RGATCY 1 cut(s) 737
MhlI GDGCHC 4 cut(s) 121, 638, 765, 923
MluCI AATT 8 cut(s) 93, 257, 467, 675, 867, 998, 1104, 1132
MlyI GAGTC 4 cut(s) 64, 119, 211, 521
MmeI TCCRAC 2 cut(s) 108, 948
Mph1103I ATGCAT 1 cut(s) 370
MroXI GAANNNNTTC 1 cut(s) 84
MseI TTAA 2 cut(s) 819, 1074
MspA1I CMGCKG 4 cut(s) 182, 246, 550, 667
MspR9I CCNGG 3 cut(s) 122, 689, 853
MunI CAATTG 2 cut(s) 93, 675
Mva1269I GAATGC 1 cut(s) 718
MvaI CCWGG 3 cut(s) 122, 689, 853
MwoI GCNNNNNNNGC 2 cut(s) 188, 485
NcoI CCATGG 1 cut(s) 306
NdeII GATC 5 cut(s) 586, 737, 808, 988, 1059
NheI GCTAGC 1 cut(s) 1051
NlaIII CATG 5 cut(s) 110, 155, 173, 310, 633
NlaIV GGNNCC 1 cut(s) 1089
NmeAIII GCCGAG 1 cut(s) 52
NmuCI GTSAC 2 cut(s) 569, 780
NsiI ATGCAT 1 cut(s) 370
NspI RCATGY 1 cut(s) 155
PagI TCATGA 1 cut(s) 106
PasI CCCWGGG 1 cut(s) 852
PciI ACATGT 1 cut(s) 151
PctI GAATGC 1 cut(s) 718
PdmI GAANNNNTTC 1 cut(s) 84
PfeI GAWTC 3 cut(s) 391, 437, 896
PflMI CCANNNNNTGG 1 cut(s) 127
PkrI GCNGC 7 cut(s) 201, 248, 658, 666, 669, 718, 793
PleI GAGTC 4 cut(s) 64, 118, 211, 521
PmaCI CACGTG 1 cut(s) 374
PmlI CACGTG 1 cut(s) 374
PpsI GAGTC 4 cut(s) 64, 118, 211, 521
Ppu21I YACGTR 1 cut(s) 374
PscI ACATGT 1 cut(s) 151
Psp124BI GAGCTC 1 cut(s) 923
Psp6I CCWGG 3 cut(s) 120, 687, 851
PspCI CACGTG 1 cut(s) 374
PspGI CCWGG 3 cut(s) 120, 687, 851
PspN4I GGNNCC 1 cut(s) 1089
PspPI GGNCC 3 cut(s) 310, 463, 1088
PstI CTGCAG 1 cut(s) 658
PstNI CAGNNNCTG 1 cut(s) 740
PsuI RGATCY 1 cut(s) 737
PvuII CAGCTG 3 cut(s) 182, 246, 667
RsaI GTAC 1 cut(s) 1041
RsaNI GTAC 1 cut(s) 1040
SacI GAGCTC 1 cut(s) 923
SaqAI TTAA 2 cut(s) 819, 1074
SatI GCNGC 7 cut(s) 200, 247, 657, 665, 668, 717, 792
Sau3AI GATC 5 cut(s) 586, 737, 808, 988, 1059
Sau96I GGNCC 3 cut(s) 310, 463, 1088
ScaI AGTACT 1 cut(s) 1041
SchI GAGTC 4 cut(s) 64, 119, 211, 521
ScrFI CCNGG 3 cut(s) 122, 689, 853
SduI GDGCHC 4 cut(s) 121, 638, 765, 923
SexAI ACCWGGT 1 cut(s) 687
SfaNI GCATC 1 cut(s) 377
SfcI CTRYAG 1 cut(s) 654
SinI GGWCC 2 cut(s) 310, 1088
SmlI CTYRAG 1 cut(s) 1043
SmoI CTYRAG 1 cut(s) 1043
Sse9I AATT 8 cut(s) 93, 257, 467, 675, 867, 998, 1104, 1132
SsiI CCGC 5 cut(s) 302, 550, 595, 907, 1120
SspI AATATT 1 cut(s) 329
SspMI CTAG 3 cut(s) 114, 251, 1052
SstI GAGCTC 1 cut(s) 923
StyD4I CCNGG 3 cut(s) 120, 687, 851
StyI CCWWGG 2 cut(s) 306, 432
TaaI ACNGT 3 cut(s) 84, 846, 1158
TaiI ACGT 1 cut(s) 376
TaqI TCGA 3 cut(s) 475, 811, 1058
TasI AATT 8 cut(s) 93, 257, 467, 675, 867, 998, 1104, 1132
TatI WGTACW 1 cut(s) 1039
TfiI GAWTC 3 cut(s) 391, 437, 896
Tru1I TTAA 2 cut(s) 819, 1074
Tru9I TTAA 2 cut(s) 819, 1074
TseFI GTSAC 2 cut(s) 569, 780
TseI GCWGC 7 cut(s) 199, 246, 656, 664, 667, 716, 791
Tsp45I GTSAC 2 cut(s) 569, 780
TspDTI ATGAA 4 cut(s) 39, 77, 339, 1145
TspGWI ACGGA 3 cut(s) 461, 898, 942
Van91I CCANNNNNTGG 1 cut(s) 127
VpaK11BI GGWCC 2 cut(s) 310, 1088
XagI CCTNNNNNAGG 1 cut(s) 24
XapI RAATTY 2 cut(s) 257, 1104
XceI RCATGY 1 cut(s) 155
XcmI CCANNNNNNNNNTGG 1 cut(s) 849
XmnI GAANNNNTTC 1 cut(s) 84
XspI CTAG 3 cut(s) 114, 251, 1052
ZrmI AGTACT 1 cut(s) 1041
Zsp2I ATGCAT 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.