Rroxscaffold_3G00234710

Protein BYPASS1-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0011567
Physical Location & Seq
Forward (+)
21344121 .. 21346080
1960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00234710.1

Sequence Viewer

Length: 1281 bp
ATGTCGTCTGTCTTGTTTATTCTCAACAAAAACATTCTTCAGACTCTTTTCCAAGCAAGGGAGGGTTTTGTGACTGGAATCTTGTGGGTTGAGACCATGCCTTCCACACATAATCATGCAGCAGGTTCTTCTTCACCTTTGACTTCATTAGGTCGCTCCATTTGGACTCGGCGAGAACAGTTTCATTCCGTTGAAGATAATCATGAGTCTAGTGCCCAGGAGTTAGAGCTTCAATCTTTTCAGAAACATGTTGCAGACCTTTTTCATGACTTGTCAGGTGTTGGTGCTGATGAGCTGCTCTCTATTGCATGGACTCGGAAGCTTTTAGATGTGTTCATCAGCTGCCTAGAGGAATTCAGAGGTATCTTTCTGAAGAACAAAGAAGATATTTCTAAACCGCCCATGGACCATTGGACTGATGAATACTTAGATAGGAGTTTGAAGGCACTTGACATTTGCAATGCAGCTCGTGATGGGATTGATAAGATTCGTATGTGGCATAAGCATTTAGAGATTGTTCTGTGTGCCTTGGATTCTCGCCAGAGGCCATATTGTGAGGGCCAGTTCCGTCGAGCAAGAAAGGCTTTGATGGATTTGGCACTTGAAATGCTTGATGGGAGAGACTCTGGGTCTGCATTTTCACAGCGGAATTGGTCTTTTGGGCGTCACAACACAAGAAAGGATCGCCACCGCCGTACCTCATCAGGACATTCTCGCTCTCACTCATGGAGCATATCCGCTTCTTGGTCTGCAGCTAAGCAGCTGCAATCAATTGCAAACAACTTGGTAGCACCTCGTGGGAATGAAAATGCTGCAACCAATGGGCTTGTAGGATCTGTATTCACAATGAGTTCCGTGCTCATGTTTGTTTTGTCGGCTCTTGTTGCTGCAATACCTTGTCAGGATCGAGGCCTTAATACTCATTTTTCCATCCCACCACAGTACTCCTGGGGTATCCCCCTAATCTCACTTCACGAACGGATAATGGAAGAATCTAAGAAGCGGGAGCGTCAGAGTTCCAACGGATTGCTGAAGGAGATTTATCAGGTTGAGAAATGCACACGCCACATGACAGAGTTTGTTGATCTGGTTCAATTCCCATTGACAGAGGAACAGAAAATGGAACTTGAACAAGTACTTGAGGAGTTAGCATCAATCTGTGAAAATTTTAAGAATGGATTGGGTCCACTGGAACGCCAAATTAGGGATGTATTCCGCAGGATTCTGAATTGCCGAACTGAGGGTCTTGAACTTTTGAGTAAGGGAAGCAATCTGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1

Protein Analysis

426

Amino Acids

48.6

Weight (kDa)

6.77

Isoelectric Point (pI)

47.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ROH1-like PF05633 51 - 419 1e-132 Protein ROH1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 113
AciI CCGC 6 cut(s) 398, 646, 691, 738, 1003, 1216
AclWI GGATC 3 cut(s) 690, 841, 912
AcsI RAATTY 2 cut(s) 353, 1165
AcuI CTGAAG 3 cut(s) 23, 392, 1052
AcyI GRCGYC 1 cut(s) 664
AdeI CACNNNGTG 1 cut(s) 797
AfaI GTAC 3 cut(s) 697, 944, 1137
AfiI CCNNNNNNNGG 4 cut(s) 58, 744, 1204, 1240
AflIII ACRYGT 1 cut(s) 247
AgsI TTSAA 7 cut(s) 194, 233, 442, 605, 1094, 1130, 1250
AhdI GACNNNNNGTC 1 cut(s) 628
AjnI CCWGG 2 cut(s) 216, 947
AluBI AGCT 7 cut(s) 229, 295, 322, 342, 467, 755, 763
AluI AGCT 7 cut(s) 229, 295, 322, 342, 467, 755, 763
Alw21I GWGCWC 1 cut(s) 861
Alw26I GTCTC 2 cut(s) 86, 615
AlwI GGATC 3 cut(s) 690, 841, 912
AoxI GGCC 3 cut(s) 545, 559, 910
ApeKI GCWGC 9 cut(s) 119, 295, 342, 464, 752, 760, 763, 812, 887
ApoI RAATTY 2 cut(s) 353, 1165
ArsI GACNNNNNNTTYG 2 cut(s) 1228, 1260
Asp700I GAANNNNTTC 1 cut(s) 180
AspS9I GGNCC 3 cut(s) 406, 559, 1184
AsuHPI GGTGA 1 cut(s) 126
AvaII GGWCC 2 cut(s) 406, 1184
BaeGI GKGCMC 1 cut(s) 217
BaeI ACNNNNGTAYC 2 cut(s) 679, 712
BauI CACGAG 2 cut(s) 468, 795
Bbv12I GWGCWC 1 cut(s) 861
BbvI GCAGC 9 cut(s) 131, 282, 329, 476, 750, 764, 772, 799, 874
BccI CCATC 4 cut(s) 467, 583, 608, 938
BceAI ACGGC 1 cut(s) 678
BciT130I CCWGG 2 cut(s) 218, 949
BciVI GTATCC 1 cut(s) 965
BcoDI GTCTC 2 cut(s) 86, 615
BfaI CTAG 2 cut(s) 210, 347
BfmI CTRYAG 1 cut(s) 750
BfuAI ACCTGC 1 cut(s) 113
BfuI GTATCC 1 cut(s) 965
BisI GCNGC 9 cut(s) 120, 296, 343, 465, 753, 761, 764, 813, 888
BlpI GCTNAGC 1 cut(s) 756
BlsI GCNGC 9 cut(s) 121, 297, 344, 466, 754, 762, 765, 814, 889
BmcAI AGTACT 2 cut(s) 944, 1137
Bme1390I CCNGG 2 cut(s) 218, 949
Bme18I GGWCC 2 cut(s) 406, 1184
BmeRI GACNNNNNGTC 1 cut(s) 628
BmgT120I GGNCC 3 cut(s) 406, 559, 1184
BmiI GGNNCC 1 cut(s) 1185
BmrFI CCNGG 2 cut(s) 218, 949
BmsI GCATC 1 cut(s) 1160
BplI GAGNNNNNCTC 2 cut(s) 284, 316
Bpu1102I GCTNAGC 1 cut(s) 756
BpuEI CTTGAG 1 cut(s) 1160
BsaHI GRCGYC 1 cut(s) 664
BsaI GGTCTC 1 cut(s) 86
BsaJI CCNNGG 4 cut(s) 216, 402, 528, 948
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 744, 1204, 1240
Bse1I ACTGG 3 cut(s) 79, 562, 1194
Bse3DI GCAATG 1 cut(s) 466
BseBI CCWGG 2 cut(s) 218, 949
BseDI CCNNGG 4 cut(s) 216, 402, 528, 948
BseGI GGATG 2 cut(s) 930, 1213
BseLI CCNNNNNNNGG 4 cut(s) 58, 744, 1204, 1240
BseMI GCAATG 1 cut(s) 466
BseMII CTCAG 1 cut(s) 1230
BseNI ACTGG 3 cut(s) 79, 562, 1194
BseRI GAGGAG 1 cut(s) 1157
BseSI GKGCMC 1 cut(s) 217
BseXI GCAGC 9 cut(s) 131, 282, 329, 476, 750, 764, 772, 799, 874
BshFI GGCC 3 cut(s) 547, 561, 912
BsiHKAI GWGCWC 1 cut(s) 861
BslI CCNNNNNNNGG 4 cut(s) 58, 744, 1204, 1240
BsmAI GTCTC 2 cut(s) 86, 615
BsnI GGCC 3 cut(s) 547, 561, 912
Bso31I GGTCTC 1 cut(s) 86
Bsp1286I GDGCHC 2 cut(s) 217, 861
Bsp143I GATC 4 cut(s) 682, 833, 904, 1084
Bsp1720I GCTNAGC 1 cut(s) 756
Bsp19I CCATGG 1 cut(s) 402
BspACI CCGC 6 cut(s) 398, 646, 691, 738, 1003, 1216
BspANI GGCC 3 cut(s) 547, 561, 912
BspCNI CTCAG 1 cut(s) 1231
BspHI TCATGA 2 cut(s) 202, 265
BspLI GGNNCC 1 cut(s) 1185
BspMAI CTGCAG 1 cut(s) 754
BspMI ACCTGC 1 cut(s) 113
BspPI GGATC 3 cut(s) 690, 841, 912
BspTNI GGTCTC 1 cut(s) 86
BsrDI GCAATG 1 cut(s) 466
BsrI ACTGG 3 cut(s) 79, 562, 1194
BssECI CCNNGG 4 cut(s) 216, 402, 528, 948
BssMI GATC 4 cut(s) 682, 833, 904, 1084
BssNI GRCGYC 1 cut(s) 664
BssSI CACGAG 2 cut(s) 468, 795
BssT1I CCWWGG 2 cut(s) 402, 528
Bst2BI CACGAG 2 cut(s) 468, 795
Bst2UI CCWGG 2 cut(s) 218, 949
Bst4CI ACNGT 2 cut(s) 180, 942
BstACI GRCGYC 1 cut(s) 664
BstDEI CTNAG 4 cut(s) 427, 756, 996, 1239
BstDSI CCRYGG 1 cut(s) 402
BstF5I GGATG 2 cut(s) 930, 1213
BstKTI GATC 4 cut(s) 685, 836, 907, 1087
BstMAI GTCTC 2 cut(s) 86, 615
BstMBI GATC 4 cut(s) 682, 833, 904, 1084
BstMWI GCNNNNNNNGC 2 cut(s) 581, 884
BstNI CCWGG 2 cut(s) 218, 949
BstNSI RCATGY 1 cut(s) 251
BstSCI CCNGG 2 cut(s) 216, 947
BstSFI CTRYAG 1 cut(s) 750
BstSLI GKGCMC 1 cut(s) 217
BstV1I GCAGC 9 cut(s) 131, 282, 329, 476, 750, 764, 772, 799, 874
BstX2I RGATCY 1 cut(s) 833
BstYI RGATCY 1 cut(s) 833
BsuI GTATCC 1 cut(s) 965
BsuRI GGCC 3 cut(s) 547, 561, 912
BtgI CCRYGG 1 cut(s) 402
BtsCI GGATG 2 cut(s) 930, 1213
BtsIMutI CAGTG 1 cut(s) 1187
BveI ACCTGC 1 cut(s) 113
CciI TCATGA 2 cut(s) 202, 265
Cfr13I GGNCC 3 cut(s) 406, 559, 1184
CseI GACGC 2 cut(s) 653, 998
Csp6I GTAC 3 cut(s) 696, 943, 1136
CviQI GTAC 3 cut(s) 696, 943, 1136
DdeI CTNAG 4 cut(s) 427, 756, 996, 1239
DpnI GATC 4 cut(s) 684, 835, 906, 1086
DpnII GATC 4 cut(s) 682, 833, 904, 1084
DraIII CACNNNGTG 1 cut(s) 797
DriI GACNNNNNGTC 1 cut(s) 628
Eam1105I GACNNNNNGTC 1 cut(s) 628
Eco130I CCWWGG 2 cut(s) 402, 528
Eco147I AGGCCT 1 cut(s) 912
Eco31I GGTCTC 1 cut(s) 86
Eco47I GGWCC 2 cut(s) 406, 1184
Eco57I CTGAAG 3 cut(s) 23, 392, 1052
EcoRI GAATTC 1 cut(s) 353
EcoRII CCWGG 2 cut(s) 216, 947
EcoT14I CCWWGG 2 cut(s) 402, 528
ErhI CCWWGG 2 cut(s) 402, 528
FalI AAGNNNNNCTT 2 cut(s) 568, 600
FauI CCCGC 1 cut(s) 996
Fnu4HI GCNGC 9 cut(s) 120, 296, 343, 465, 753, 761, 764, 813, 888
FokI GGATG 2 cut(s) 917, 1220
Fsp4HI GCNGC 9 cut(s) 120, 296, 343, 465, 753, 761, 764, 813, 888
FspBI CTAG 2 cut(s) 210, 347
GluI GCNGC 9 cut(s) 120, 296, 343, 465, 753, 761, 764, 813, 888
HaeIII GGCC 3 cut(s) 547, 561, 912
HgaI GACGC 2 cut(s) 653, 998
Hin1I GRCGYC 1 cut(s) 664
HindIII AAGCTT 1 cut(s) 320
HphI GGTGA 1 cut(s) 126
Hpy166II GTNNAC 1 cut(s) 1187
Hpy188I TCNGA 7 cut(s) 42, 243, 318, 359, 372, 1014, 1227
Hpy188III TCNNGA 8 cut(s) 203, 266, 470, 705, 902, 974, 1247, 1274
Hpy8I GTNNAC 1 cut(s) 1187
Hpy99I CGWCG 1 cut(s) 573
HpyAV CCTTC 3 cut(s) 111, 436, 1027
HpyCH4III ACNGT 2 cut(s) 180, 942
HpyF10VI GCNNNNNNNGC 2 cut(s) 581, 884
HpyF3I CTNAG 4 cut(s) 427, 756, 996, 1239
Hsp92I GRCGYC 1 cut(s) 664
Kzo9I GATC 4 cut(s) 682, 833, 904, 1084
LmnI GCTCC 3 cut(s) 161, 729, 1006
Lsp1109I GCAGC 9 cut(s) 131, 282, 329, 476, 750, 764, 772, 799, 874
LweI GCATC 1 cut(s) 1160
MaeI CTAG 2 cut(s) 210, 347
MaeIII GTNAC 2 cut(s) 70, 665
MalI GATC 4 cut(s) 684, 835, 906, 1086
MboI GATC 4 cut(s) 682, 833, 904, 1084
MboII GAAGA 7 cut(s) 29, 120, 123, 206, 385, 395, 1001
MfeI CAATTG 1 cut(s) 771
MflI RGATCY 1 cut(s) 833
MhlI GDGCHC 2 cut(s) 217, 861
MluCI AATT 7 cut(s) 353, 649, 771, 1094, 1165, 1200, 1228
MlyI GAGTC 5 cut(s) 37, 160, 215, 307, 617
MmeI TCCRAC 1 cut(s) 1044
MroXI GAANNNNTTC 1 cut(s) 180
MseI TTAA 2 cut(s) 915, 1170
MslI CAYNNNNRTG 1 cut(s) 114
MspA1I CMGCKG 3 cut(s) 342, 646, 763
MspR9I CCNGG 2 cut(s) 218, 949
MunI CAATTG 1 cut(s) 771
MvaI CCWGG 2 cut(s) 218, 949
MwoI GCNNNNNNNGC 2 cut(s) 581, 884
NcoI CCATGG 1 cut(s) 402
NdeII GATC 4 cut(s) 682, 833, 904, 1084
NlaIV GGNNCC 1 cut(s) 1185
NmeAIII GCCGAG 1 cut(s) 148
NmuCI GTSAC 2 cut(s) 70, 665
NspI RCATGY 1 cut(s) 251
PagI TCATGA 2 cut(s) 202, 265
PceI AGGCCT 1 cut(s) 912
PciI ACATGT 1 cut(s) 247
PcsI WCGNNNNNNNCGW 1 cut(s) 691
PdmI GAANNNNTTC 1 cut(s) 180
PfeI GAWTC 5 cut(s) 78, 487, 533, 992, 1222
PkrI GCNGC 9 cut(s) 121, 297, 344, 466, 754, 762, 765, 814, 889
PleI GAGTC 5 cut(s) 37, 160, 214, 307, 617
PpsI GAGTC 5 cut(s) 37, 160, 214, 307, 617
PscI ACATGT 1 cut(s) 247
Psp6I CCWGG 2 cut(s) 216, 947
PspGI CCWGG 2 cut(s) 216, 947
PspN4I GGNNCC 1 cut(s) 1185
PspPI GGNCC 3 cut(s) 406, 559, 1184
PstI CTGCAG 1 cut(s) 754
PsuI RGATCY 1 cut(s) 833
PvuII CAGCTG 2 cut(s) 342, 763
RsaI GTAC 3 cut(s) 697, 944, 1137
RsaNI GTAC 3 cut(s) 696, 943, 1136
RseI CAYNNNNRTG 1 cut(s) 114
SaqAI TTAA 2 cut(s) 915, 1170
SatI GCNGC 9 cut(s) 120, 296, 343, 465, 753, 761, 764, 813, 888
Sau3AI GATC 4 cut(s) 682, 833, 904, 1084
Sau96I GGNCC 3 cut(s) 406, 559, 1184
ScaI AGTACT 2 cut(s) 944, 1137
SchI GAGTC 5 cut(s) 37, 160, 215, 307, 617
ScrFI CCNGG 2 cut(s) 218, 949
SduI GDGCHC 2 cut(s) 217, 861
SfaNI GCATC 1 cut(s) 1160
SfcI CTRYAG 1 cut(s) 750
SinI GGWCC 2 cut(s) 406, 1184
SmiMI CAYNNNNRTG 1 cut(s) 114
SmlI CTYRAG 1 cut(s) 1139
SmoI CTYRAG 1 cut(s) 1139
Sse9I AATT 7 cut(s) 353, 649, 771, 1094, 1165, 1200, 1228
SseBI AGGCCT 1 cut(s) 912
SsiI CCGC 6 cut(s) 398, 646, 691, 738, 1003, 1216
SspMI CTAG 2 cut(s) 210, 347
StuI AGGCCT 1 cut(s) 912
StyD4I CCNGG 2 cut(s) 216, 947
StyI CCWWGG 2 cut(s) 402, 528
TaaI ACNGT 2 cut(s) 180, 942
TaqI TCGA 2 cut(s) 571, 907
TasI AATT 7 cut(s) 353, 649, 771, 1094, 1165, 1200, 1228
TatI WGTACW 2 cut(s) 942, 1135
TfiI GAWTC 5 cut(s) 78, 487, 533, 992, 1222
Tru1I TTAA 2 cut(s) 915, 1170
Tru9I TTAA 2 cut(s) 915, 1170
TscAI CASTG 1 cut(s) 1194
TseFI GTSAC 2 cut(s) 70, 665
TseI GCWGC 9 cut(s) 119, 295, 342, 464, 752, 760, 763, 812, 887
Tsp45I GTSAC 2 cut(s) 70, 665
TspDTI ATGAA 6 cut(s) 135, 173, 254, 325, 435, 819
TspGWI ACGGA 5 cut(s) 178, 557, 844, 994, 1038
TspRI CASTG 1 cut(s) 1194
VpaK11BI GGWCC 2 cut(s) 406, 1184
XapI RAATTY 2 cut(s) 353, 1165
XceI RCATGY 1 cut(s) 251
XcmI CCANNNNNNNNNTGG 1 cut(s) 945
XmnI GAANNNNTTC 1 cut(s) 180
XspI CTAG 2 cut(s) 210, 347
ZrmI AGTACT 2 cut(s) 944, 1137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.