Rorug07G0223700

Protein BYPASS1-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0011567
Physical Location & Seq
Reverse (-)
20367946 .. 20370455
2510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0223700.1

Sequence Viewer

Length: 861 bp
ATGAACGCGAGGCTAACGGAGGGGGCGATACTGAAGATCAAGACGGAGTTTGTTGACGACAACTATAAGCCTATCCTGCAAGTGATCGACTTGAAGCAGATCCACACACAGCGCGGCGGCGGCTGCGGCACTGAGTGGTACAGGCTGGTCATATCCGATGGGTCCCACACCGCGCAGGGGATGCTGGCCACTCAGCAGAACTTCCTGGTTCAGCAAGGCCACCTTCAGAAGGGCTCCGTTGTCCGCCTGAATCAATTCACCTGCACCACCGTCCAAGGCCGCAAGATCATCATTATAATCTCATTGAATGTGCTAGTTGATAAATGTGATATCATTGGACAGGCTGCCAGATTTTCGAATGCACAATCCCCACGGACAAGACTTGTAGATCAAACAACTGAGACAATTATAAGCGAACCCTACAGTCTTCCGGCGATTGACGCGAGGCTAACGGAGGGGGCGATACTGAAGATCACGACGGAGTTTGTTGACGACAACTATAAGCCTATCCTGCAAGTGATCGACTTGAAGCAGATCCACACACAGCGCGGCGGCGGCTGCGGCACTGAGCGGTACAGGCTGCCCATATCCGATGGGTCCCACACCGCGCAGGGGATGCTGGCCGCTCAGCAGAACTTCCTGGTTCAGCAAGGCCACCTTCAGAAGGGCTCCGTTGTCTGCCTAAATCAATTCACCTGCACCACCGTCCAAGGCCGCAAGATCATCATTATAATCTCATTGAATGTGCTAGTTGATAAATGTGATATCATTGGACAGGCTGCCAGATTTTCGAATGCACAATCCCAAGGGACAATACTTATAGATCAAACAACCGAGCAATTCGGTTCCTTGGGGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1

Protein Analysis

286

Amino Acids

31.45

Weight (kDa)

8.45

Isoelectric Point (pI)

27.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rep-A_N PF04057 5 - 106 2.9e-28 Replication factor-A protein 1, N-terminal domain
Rep-A_N PF04057 150 - 251 1.4e-27 Replication factor-A protein 1, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 296, 410, 731
AarI CACCTGC 2 cut(s) 269, 704
Acc36I ACCTGC 2 cut(s) 269, 704
AccBSI CCGCTC 2 cut(s) 571, 626
AccII CGCG 6 cut(s) 8, 114, 173, 443, 549, 608
AclWI GGATC 2 cut(s) 94, 529
AcoI YGGCCR 2 cut(s) 186, 621
AcuI CTGAAG 4 cut(s) 53, 209, 488, 644
AdeI CACNNNGTG 1 cut(s) 135
AfaI GTAC 2 cut(s) 140, 575
AfiI CCNNNNNNNGG 4 cut(s) 177, 229, 612, 664
AgsI TTSAA 4 cut(s) 94, 307, 529, 742
AjnI CCWGG 2 cut(s) 204, 639
Alw26I GTCTC 1 cut(s) 395
AlwI GGATC 2 cut(s) 94, 529
AoxI GGCC 6 cut(s) 186, 217, 277, 621, 652, 712
ApeKI GCWGC 5 cut(s) 123, 344, 558, 580, 779
Asp700I GAANNNNTTC 1 cut(s) 254
AspLEI GCGC 4 cut(s) 114, 175, 549, 610
AspS9I GGNCC 2 cut(s) 162, 597
AsuHPI GGTGA 2 cut(s) 250, 685
AsuII TTCGAA 2 cut(s) 356, 791
AvaII GGWCC 2 cut(s) 162, 597
BalI TGGCCA 1 cut(s) 188
BanII GRGCYC 2 cut(s) 236, 671
BbsI GAAGAC 1 cut(s) 419
BbvI GCAGC 5 cut(s) 110, 331, 545, 567, 766
BccI CCATC 2 cut(s) 152, 587
BciT130I CCWGG 2 cut(s) 206, 641
BcoDI GTCTC 1 cut(s) 395
BfaI CTAG 2 cut(s) 314, 749
BfmI CTRYAG 1 cut(s) 421
BfuAI ACCTGC 2 cut(s) 269, 704
BlpI GCTNAGC 1 cut(s) 627
Bme1390I CCNGG 2 cut(s) 206, 641
Bme18I GGWCC 2 cut(s) 162, 597
BmgT120I GGNCC 2 cut(s) 162, 597
BmiI GGNNCC 7 cut(s) 163, 164, 235, 598, 599, 670, 847
BmrFI CCNGG 2 cut(s) 206, 641
BmsI GCATC 2 cut(s) 171, 606
BpiI GAAGAC 1 cut(s) 419
Bpu1102I GCTNAGC 1 cut(s) 627
Bpu14I TTCGAA 2 cut(s) 356, 791
BsaJI CCNNGG 5 cut(s) 274, 371, 709, 805, 849
Bsc4I CCNNNNNNNGG 4 cut(s) 177, 229, 612, 664
BseBI CCWGG 2 cut(s) 206, 641
BseDI CCNNGG 5 cut(s) 274, 371, 709, 805, 849
BseGI GGATG 2 cut(s) 186, 621
BseLI CCNNNNNNNGG 4 cut(s) 177, 229, 612, 664
BseMII CTCAG 5 cut(s) 123, 206, 390, 558, 641
BseXI GCAGC 5 cut(s) 110, 331, 545, 567, 766
BsgI GTGCAG 2 cut(s) 247, 682
Bsh1236I CGCG 6 cut(s) 8, 114, 173, 443, 549, 608
BshFI GGCC 6 cut(s) 188, 219, 279, 623, 654, 714
BsiSI CCGG 1 cut(s) 431
BslFI GGGAC 3 cut(s) 148, 583, 823
BslI CCNNNNNNNGG 4 cut(s) 177, 229, 612, 664
BsmAI GTCTC 1 cut(s) 395
BsmFI GGGAC 3 cut(s) 148, 583, 823
BsmI GAATGC 2 cut(s) 364, 799
BsnI GGCC 6 cut(s) 188, 219, 279, 623, 654, 714
Bsp119I TTCGAA 2 cut(s) 356, 791
Bsp1286I GDGCHC 2 cut(s) 236, 671
Bsp1720I GCTNAGC 1 cut(s) 627
BspANI GGCC 6 cut(s) 188, 219, 279, 623, 654, 714
BspCNI CTCAG 5 cut(s) 124, 205, 391, 559, 640
BspFNI CGCG 6 cut(s) 8, 114, 173, 443, 549, 608
BspLI GGNNCC 7 cut(s) 163, 164, 235, 598, 599, 670, 847
BspMI ACCTGC 2 cut(s) 269, 704
BspPI GGATC 2 cut(s) 94, 529
BspT104I TTCGAA 2 cut(s) 356, 791
BsrBI CCGCTC 2 cut(s) 571, 626
BssECI CCNNGG 5 cut(s) 274, 371, 709, 805, 849
BssT1I CCWWGG 4 cut(s) 274, 709, 805, 849
Bst2UI CCWGG 2 cut(s) 206, 641
Bst4CI ACNGT 3 cut(s) 271, 425, 706
BstAPI GCANNNNNTGC 2 cut(s) 181, 616
BstBI TTCGAA 2 cut(s) 356, 791
BstC8I GCNNGC 2 cut(s) 186, 621
BstDEI CTNAG 5 cut(s) 132, 192, 399, 567, 627
BstDSI CCRYGG 1 cut(s) 371
BstENI CCTNNNNNAGG 2 cut(s) 227, 662
BstF5I GGATG 2 cut(s) 186, 621
BstFNI CGCG 6 cut(s) 8, 114, 173, 443, 549, 608
BstHHI GCGC 4 cut(s) 114, 175, 549, 610
BstMAI GTCTC 1 cut(s) 395
BstNI CCWGG 2 cut(s) 206, 641
BstSCI CCNGG 2 cut(s) 204, 639
BstSFI CTRYAG 1 cut(s) 421
BstUI CGCG 6 cut(s) 8, 114, 173, 443, 549, 608
BstV1I GCAGC 5 cut(s) 110, 331, 545, 567, 766
BstV2I GAAGAC 1 cut(s) 419
BstX2I RGATCY 2 cut(s) 99, 534
BstYI RGATCY 2 cut(s) 99, 534
BsuRI GGCC 6 cut(s) 188, 219, 279, 623, 654, 714
BtgI CCRYGG 1 cut(s) 371
BtsCI GGATG 2 cut(s) 186, 621
BtsIMutI CAGTG 2 cut(s) 129, 564
BveI ACCTGC 2 cut(s) 269, 704
Cac8I GCNNGC 2 cut(s) 186, 621
CfoI GCGC 4 cut(s) 114, 175, 549, 610
Cfr13I GGNCC 2 cut(s) 162, 597
CseI GACGC 1 cut(s) 449
Csp6I GTAC 2 cut(s) 139, 574
CviQI GTAC 2 cut(s) 139, 574
DdeI CTNAG 5 cut(s) 132, 192, 399, 567, 627
DraIII CACNNNGTG 1 cut(s) 135
EaeI YGGCCR 2 cut(s) 186, 621
EciI GGCGGA 1 cut(s) 233
Eco130I CCWWGG 4 cut(s) 274, 709, 805, 849
Eco24I GRGCYC 2 cut(s) 236, 671
Eco32I GATATC 2 cut(s) 331, 766
Eco47I GGWCC 2 cut(s) 162, 597
Eco57I CTGAAG 4 cut(s) 53, 209, 488, 644
EcoNI CCTNNNNNAGG 2 cut(s) 227, 662
EcoO109I RGGNCCY 2 cut(s) 162, 597
EcoRII CCWGG 2 cut(s) 204, 639
EcoRV GATATC 2 cut(s) 331, 766
EcoT14I CCWWGG 4 cut(s) 274, 709, 805, 849
EcoT38I GRGCYC 2 cut(s) 236, 671
ErhI CCWWGG 4 cut(s) 274, 709, 805, 849
FaiI YATR 9 cut(s) 66, 152, 296, 410, 501, 587, 731, 821, 859
FalI AAGNNNNNCTT 4 cut(s) 207, 239, 642, 674
FaqI GGGAC 3 cut(s) 148, 583, 823
FokI GGATG 2 cut(s) 193, 628
FriOI GRGCYC 2 cut(s) 236, 671
FspBI CTAG 2 cut(s) 314, 749
GlaI GCGC 4 cut(s) 113, 174, 548, 609
HaeIII GGCC 6 cut(s) 188, 219, 279, 623, 654, 714
HapII CCGG 1 cut(s) 431
HgaI GACGC 1 cut(s) 449
HhaI GCGC 4 cut(s) 114, 175, 549, 610
Hin6I GCGC 4 cut(s) 112, 173, 547, 608
HinP1I GCGC 4 cut(s) 112, 173, 547, 608
HincII GTYRAC 2 cut(s) 55, 490
HindII GTYRAC 2 cut(s) 55, 490
HinfI GANTC 1 cut(s) 250
HpaII CCGG 1 cut(s) 431
HphI GGTGA 2 cut(s) 250, 685
Hpy166II GTNNAC 2 cut(s) 55, 490
Hpy188I TCNGA 4 cut(s) 157, 228, 592, 663
Hpy188III TCNNGA 2 cut(s) 40, 475
Hpy8I GTNNAC 2 cut(s) 55, 490
Hpy99I CGWCG 1 cut(s) 481
HpyAV CCTTC 4 cut(s) 223, 233, 658, 668
HpyCH4III ACNGT 3 cut(s) 271, 425, 706
HpyCH4V TGCA 6 cut(s) 79, 264, 362, 514, 699, 797
HpyF3I CTNAG 5 cut(s) 132, 192, 399, 567, 627
HspAI GCGC 4 cut(s) 112, 173, 547, 608
KflI GGGWCCC 2 cut(s) 162, 597
LmnI GCTCC 2 cut(s) 239, 674
Lsp1109I GCAGC 5 cut(s) 110, 331, 545, 567, 766
LweI GCATC 2 cut(s) 171, 606
MaeI CTAG 2 cut(s) 314, 749
MbiI CCGCTC 2 cut(s) 571, 626
MboII GAAGA 3 cut(s) 46, 419, 481
MflI RGATCY 2 cut(s) 99, 534
MhlI GDGCHC 2 cut(s) 236, 671
MlsI TGGCCA 1 cut(s) 188
MluCI AATT 4 cut(s) 254, 405, 689, 839
MluNI TGGCCA 1 cut(s) 188
MnlI CCTC 4 cut(s) 3, 13, 438, 448
Mox20I TGGCCA 1 cut(s) 188
MroXI GAANNNNTTC 1 cut(s) 254
MscI TGGCCA 1 cut(s) 188
Msp20I TGGCCA 1 cut(s) 188
MspI CCGG 1 cut(s) 431
MspR9I CCNGG 2 cut(s) 206, 641
Mva1269I GAATGC 2 cut(s) 364, 799
MvaI CCWGG 2 cut(s) 206, 641
MvnI CGCG 6 cut(s) 8, 114, 173, 443, 549, 608
NlaIV GGNNCC 7 cut(s) 163, 164, 235, 598, 599, 670, 847
NspV TTCGAA 2 cut(s) 356, 791
PaqCI CACCTGC 2 cut(s) 269, 704
PcsI WCGNNNNNNNCGW 2 cut(s) 23, 458
PctI GAATGC 2 cut(s) 364, 799
PdmI GAANNNNTTC 1 cut(s) 254
PfeI GAWTC 1 cut(s) 250
PpuMI RGGWCCY 2 cut(s) 162, 597
PsiI TTATAA 3 cut(s) 296, 410, 731
Psp5II RGGWCCY 2 cut(s) 162, 597
Psp6I CCWGG 2 cut(s) 204, 639
PspGI CCWGG 2 cut(s) 204, 639
PspN4I GGNNCC 7 cut(s) 163, 164, 235, 598, 599, 670, 847
PspPI GGNCC 2 cut(s) 162, 597
PspPPI RGGWCCY 2 cut(s) 162, 597
PsuI RGATCY 2 cut(s) 99, 534
RsaI GTAC 2 cut(s) 140, 575
RsaNI GTAC 2 cut(s) 139, 574
Sau96I GGNCC 2 cut(s) 162, 597
ScrFI CCNGG 2 cut(s) 206, 641
SduI GDGCHC 2 cut(s) 236, 671
SetI ASST 4 cut(s) 225, 263, 660, 698
SfaNI GCATC 2 cut(s) 171, 606
SfcI CTRYAG 1 cut(s) 421
SfuI TTCGAA 2 cut(s) 356, 791
SinI GGWCC 2 cut(s) 162, 597
Sse9I AATT 4 cut(s) 254, 405, 689, 839
SspMI CTAG 2 cut(s) 314, 749
StyD4I CCNGG 2 cut(s) 204, 639
StyI CCWWGG 4 cut(s) 274, 709, 805, 849
TaaI ACNGT 3 cut(s) 271, 425, 706
TaqI TCGA 4 cut(s) 87, 356, 522, 791
TasI AATT 4 cut(s) 254, 405, 689, 839
TfiI GAWTC 1 cut(s) 250
TscAI CASTG 2 cut(s) 136, 571
TseI GCWGC 5 cut(s) 123, 344, 558, 580, 779
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 7 cut(s) 32, 59, 226, 388, 467, 494, 661
TspRI CASTG 2 cut(s) 136, 571
VpaK11BI GGWCC 2 cut(s) 162, 597
XagI CCTNNNNNAGG 2 cut(s) 227, 662
XmnI GAANNNNTTC 1 cut(s) 254
XspI CTAG 2 cut(s) 314, 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.