MD15G1417800.v1.1

Protein BYPASS1-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0011567
Physical Location & Seq
Forward (+)
51969102 .. 51970926
1825 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1417800.v1.1.491

Sequence Viewer

Length: 1197 bp
ATGCCTTCTACGCACAATTCGGGTTCTTCTTCGCCATTGACTTCGTTTGGTCGCTCGATTTGGAGCCGGCGAGAGCCATTTCAATCAACAGAAGCTAATCAGGAGTCCAGTGAGCAGGAATTAGAGGTTCAATCTTTTCAAAAACTTGTGACAGAACTGTTTCATGACTTGTCAGCTGTTGGTGCTGATGAATTGCTCTCCATTGCGTGGATTCGGAAACTTTTGGATGTTTTTGTTAGCTGCCAAGACGAATTCAGGGTTTTATTGTTGAAAAACAAGGCGCAGGTTTCTAAACCGCCGTTGGATCATTGGGCGGATGAATACTTAGATAGGAGCTTGAAGGCACTTGACATTTGCAATGCTGCTCGTGATGGGATTGACAAGATTCGTGTGTGGCATAAGCATTTAGAGATCGTTCTGTGTGCCTTGGAGTCTCGCCAGAGGGCATTCAGTGAGGGCCAGTTCCGTCGAGCAAGAAAGGCTTTGGTGGATTTGGCAATTGAAATGCTTGATGAGAGAGACTCTGGGTCTGTTTTTTCTCACCGCAACTGGTCTTTTGGGCTTAACAATAACACAAGAAAGGATGCTCGCCGTCGCCAACACTCATCTGGGAGTTCAACTACGCATTCCCGCTCTAACTCGTGGAGCGTATCACACTCTTGGTCTGCAGCTAAGCAGCTTCAGTCAATTGCAAGCAACTTGGTAGCACCTCGTGGAAATGAGGTTATTGCAGCAAATAGGCTTGCAGGCTCTGTTTTCACAATGAGTTCTGTGCTCACATTTGTTTTGTCGTCTCTCGTGGCTGCGATCCCATGTCAGGATCGAGGCATTAGCACTCATTTTTCAATCCCACCGCAGTACTCCTGGGGCATCCCATTATCCTCACTTCATGAACGGATAATAGAGGAATCTAAGAAGCGAGAGCGCCATAACTCACATGGGTTGCTGAGGGAGATTTATCATGTCGAGAGATGTGCACGCCACATGACAGACTTGATGGATCTGGTTCAGTTTCCATTAACAGAGGAACAGAAAGTGGAAGTCGAGCAAGAACTGCAGGAGTTAGCATCGATTTGTGAAAACCTGAAGAATGGATTGGATCCGCTGGAACGCCAAATTAGGGAAGTATTCCGTAGGATAATGAATTGCAGAACGGAGGGTCTCGAACTTTTGAGCAGCGCAAACAATCTGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1

Protein Analysis

399

Amino Acids

45.28

Weight (kDa)

6.58

Isoelectric Point (pI)

52.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ROH1-like PF05633 14 - 391 6.6e-133 Protein ROH1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 274
AccB7I CCANNNNNTGG 1 cut(s) 207
AccBSI CCGCTC 1 cut(s) 633
AciI CCGC 6 cut(s) 296, 314, 544, 631, 854, 1103
AclWI GGATC 6 cut(s) 312, 802, 828, 1008, 1094, 1107
AcsI RAATTY 1 cut(s) 251
AcuI CTGAAG 2 cut(s) 665, 1106
AdeI CACNNNGTG 1 cut(s) 713
AfaI GTAC 1 cut(s) 860
AfiI CCNNNNNNNGG 3 cut(s) 207, 817, 1120
AgsI TTSAA 8 cut(s) 83, 131, 140, 271, 340, 503, 618, 846
AhdI GACNNNNNGTC 1 cut(s) 526
AjnI CCWGG 1 cut(s) 863
AjuI GAANNNNNNNTTGG 2 cut(s) 1079, 1111
AluBI AGCT 6 cut(s) 95, 176, 240, 336, 671, 679
AluI AGCT 6 cut(s) 95, 176, 240, 336, 671, 679
Alw21I GWGCWC 2 cut(s) 777, 979
Alw26I GTCTC 4 cut(s) 438, 513, 798, 1166
Alw44I GTGCAC 1 cut(s) 975
AlwI GGATC 6 cut(s) 312, 802, 828, 1008, 1094, 1107
AlwNI CAGNNNCTG 1 cut(s) 752
AoxI GGCC 1 cut(s) 457
ApaLI GTGCAC 1 cut(s) 975
ApeKI GCWGC 7 cut(s) 240, 362, 668, 676, 731, 803, 1176
ApoI RAATTY 1 cut(s) 251
Asp700I GAANNNNTTC 1 cut(s) 159
AspLEI GCGC 3 cut(s) 283, 927, 1181
AspS9I GGNCC 1 cut(s) 457
AsuHPI GGTGA 1 cut(s) 533
BaeGI GKGCMC 1 cut(s) 979
BamHI GGATCC 1 cut(s) 1099
BauI CACGAG 4 cut(s) 366, 640, 711, 797
Bbv12I GWGCWC 2 cut(s) 777, 979
BbvCI CCTCAGC 1 cut(s) 947
BbvI GCAGC 7 cut(s) 227, 349, 680, 688, 743, 790, 1188
BccI CCATC 2 cut(s) 365, 991
BceAI ACGGC 2 cut(s) 283, 576
BcgI CGANNNNNNTGC 2 cut(s) 956, 990
BciT130I CCWGG 1 cut(s) 865
BcoDI GTCTC 4 cut(s) 438, 513, 798, 1166
BfmI CTRYAG 2 cut(s) 666, 1055
BfoI RGCGCY 1 cut(s) 928
BfuAI ACCTGC 1 cut(s) 274
BisI GCNGC 7 cut(s) 241, 363, 669, 677, 732, 804, 1177
BlpI GCTNAGC 1 cut(s) 672
BlsI GCNGC 7 cut(s) 242, 364, 670, 678, 733, 805, 1178
BmcAI AGTACT 1 cut(s) 860
Bme1390I CCNGG 1 cut(s) 865
BmeRI GACNNNNNGTC 1 cut(s) 526
BmgT120I GGNCC 1 cut(s) 457
BmiI GGNNCC 2 cut(s) 65, 1101
BmrFI CCNGG 1 cut(s) 865
BmsI GCATC 3 cut(s) 574, 879, 1076
BplI GAGNNNNNCTC 2 cut(s) 506, 538
Bpu10I CCTNAGC 1 cut(s) 947
Bpu1102I GCTNAGC 1 cut(s) 672
Bsa29I ATCGAT 1 cut(s) 1070
BsaI GGTCTC 1 cut(s) 1166
BsaJI CCNNGG 2 cut(s) 426, 864
Bsc4I CCNNNNNNNGG 3 cut(s) 207, 817, 1120
Bse118I RCCGGY 1 cut(s) 66
Bse1I ACTGG 3 cut(s) 108, 460, 554
Bse3DI GCAATG 2 cut(s) 201, 364
BseBI CCWGG 1 cut(s) 865
BseCI ATCGAT 1 cut(s) 1070
BseDI CCNNGG 2 cut(s) 426, 864
BseGI GGATG 4 cut(s) 232, 322, 589, 870
BseLI CCNNNNNNNGG 3 cut(s) 207, 817, 1120
BseMI GCAATG 2 cut(s) 201, 364
BseMII CTCAG 1 cut(s) 938
BseNI ACTGG 3 cut(s) 108, 460, 554
BseSI GKGCMC 1 cut(s) 979
BseXI GCAGC 7 cut(s) 227, 349, 680, 688, 743, 790, 1188
BshFI GGCC 1 cut(s) 459
BshVI ATCGAT 1 cut(s) 1070
BsiHKAI GWGCWC 2 cut(s) 777, 979
BsiSI CCGG 1 cut(s) 67
BslI CCNNNNNNNGG 3 cut(s) 207, 817, 1120
BsmAI GTCTC 4 cut(s) 438, 513, 798, 1166
BsmBI CGTCTC 1 cut(s) 798
BsmI GAATGC 2 cut(s) 446, 625
BsnI GGCC 1 cut(s) 459
Bso31I GGTCTC 1 cut(s) 1166
Bsp1286I GDGCHC 2 cut(s) 777, 979
Bsp143I GATC 6 cut(s) 304, 411, 807, 820, 1000, 1099
Bsp1720I GCTNAGC 1 cut(s) 672
BspACI CCGC 6 cut(s) 296, 314, 544, 631, 854, 1103
BspANI GGCC 1 cut(s) 459
BspCNI CTCAG 1 cut(s) 939
BspDI ATCGAT 1 cut(s) 1070
BspHI TCATGA 2 cut(s) 163, 889
BspLI GGNNCC 2 cut(s) 65, 1101
BspMAI CTGCAG 2 cut(s) 670, 1059
BspMI ACCTGC 1 cut(s) 274
BspPI GGATC 6 cut(s) 312, 802, 828, 1008, 1094, 1107
BspTNI GGTCTC 1 cut(s) 1166
BsrBI CCGCTC 1 cut(s) 633
BsrDI GCAATG 2 cut(s) 201, 364
BsrFI RCCGGY 1 cut(s) 66
BsrI ACTGG 3 cut(s) 108, 460, 554
BssAI RCCGGY 1 cut(s) 66
BssECI CCNNGG 2 cut(s) 426, 864
BssMI GATC 6 cut(s) 304, 411, 807, 820, 1000, 1099
BssSI CACGAG 4 cut(s) 366, 640, 711, 797
BssT1I CCWWGG 1 cut(s) 426
Bst2BI CACGAG 4 cut(s) 366, 640, 711, 797
Bst2UI CCWGG 1 cut(s) 865
Bst4CI ACNGT 1 cut(s) 159
BstAPI GCANNNNNTGC 1 cut(s) 1054
BstC8I GCNNGC 6 cut(s) 68, 589, 694, 744, 748, 979
BstDEI CTNAG 4 cut(s) 325, 672, 912, 947
BstF5I GGATG 4 cut(s) 232, 322, 589, 870
BstH2I RGCGCY 1 cut(s) 928
BstHHI GCGC 3 cut(s) 283, 927, 1181
BstKTI GATC 6 cut(s) 307, 414, 810, 823, 1003, 1102
BstMAI GTCTC 4 cut(s) 438, 513, 798, 1166
BstMBI GATC 6 cut(s) 304, 411, 807, 820, 1000, 1099
BstMWI GCNNNNNNNGC 4 cut(s) 10, 182, 479, 1054
BstNI CCWGG 1 cut(s) 865
BstSCI CCNGG 1 cut(s) 863
BstSFI CTRYAG 2 cut(s) 666, 1055
BstSLI GKGCMC 1 cut(s) 979
BstV1I GCAGC 7 cut(s) 227, 349, 680, 688, 743, 790, 1188
BstX2I RGATCY 2 cut(s) 1000, 1099
BstYI RGATCY 2 cut(s) 1000, 1099
Bsu15I ATCGAT 1 cut(s) 1070
BsuRI GGCC 1 cut(s) 459
BsuTUI ATCGAT 1 cut(s) 1070
BtsCI GGATG 4 cut(s) 232, 322, 589, 870
BtsIMutI CAGTG 2 cut(s) 115, 457
BveI ACCTGC 1 cut(s) 274
Cac8I GCNNGC 6 cut(s) 68, 589, 694, 744, 748, 979
CaiI CAGNNNCTG 1 cut(s) 752
CciI TCATGA 2 cut(s) 163, 889
CfoI GCGC 3 cut(s) 283, 927, 1181
Cfr10I RCCGGY 1 cut(s) 66
Cfr13I GGNCC 1 cut(s) 457
ClaI ATCGAT 1 cut(s) 1070
Csp6I GTAC 1 cut(s) 859
CviAII CATG 6 cut(s) 164, 813, 890, 938, 962, 985
CviQI GTAC 1 cut(s) 859
DdeI CTNAG 4 cut(s) 325, 672, 912, 947
DpnI GATC 6 cut(s) 306, 413, 809, 822, 1002, 1101
DpnII GATC 6 cut(s) 304, 411, 807, 820, 1000, 1099
DraIII CACNNNGTG 1 cut(s) 713
DriI GACNNNNNGTC 1 cut(s) 526
Eam1105I GACNNNNNGTC 1 cut(s) 526
EciI GGCGGA 1 cut(s) 329
Eco130I CCWWGG 1 cut(s) 426
Eco31I GGTCTC 1 cut(s) 1166
Eco57I CTGAAG 2 cut(s) 665, 1106
EcoRI GAATTC 1 cut(s) 251
EcoRII CCWGG 1 cut(s) 863
EcoT14I CCWWGG 1 cut(s) 426
ErhI CCWWGG 1 cut(s) 426
Esp3I CGTCTC 1 cut(s) 798
FaeI CATG 6 cut(s) 167, 816, 893, 941, 965, 988
FaiI YATR 8 cut(s) 165, 399, 814, 891, 930, 939, 963, 986
FalI AAGNNNNNCTT 2 cut(s) 466, 498
FatI CATG 6 cut(s) 163, 812, 889, 937, 961, 984
FauI CCCGC 1 cut(s) 638
Fnu4HI GCNGC 7 cut(s) 241, 363, 669, 677, 732, 804, 1177
FokI GGATG 4 cut(s) 239, 329, 596, 857
Fsp4HI GCNGC 7 cut(s) 241, 363, 669, 677, 732, 804, 1177
GlaI GCGC 3 cut(s) 282, 926, 1180
GluI GCNGC 7 cut(s) 241, 363, 669, 677, 732, 804, 1177
HaeII RGCGCY 1 cut(s) 928
HaeIII GGCC 1 cut(s) 459
HapII CCGG 1 cut(s) 67
HhaI GCGC 3 cut(s) 283, 927, 1181
Hin1II CATG 6 cut(s) 167, 816, 893, 941, 965, 988
Hin6I GCGC 3 cut(s) 281, 925, 1179
HinP1I GCGC 3 cut(s) 281, 925, 1179
HinfI GANTC 6 cut(s) 104, 211, 385, 431, 521, 908
HpaII CCGG 1 cut(s) 67
HphI GGTGA 1 cut(s) 533
Hpy166II GTNNAC 1 cut(s) 977
Hpy188I TCNGA 1 cut(s) 216
Hpy188III TCNNGA 8 cut(s) 101, 164, 368, 818, 890, 967, 1163, 1190
Hpy8I GTNNAC 1 cut(s) 977
Hpy99I CGWCG 2 cut(s) 471, 597
HpyAV CCTTC 2 cut(s) 15, 334
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4V TGCA 8 cut(s) 357, 668, 692, 731, 746, 977, 1057, 1149
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 182, 479, 1054
HpyF3I CTNAG 4 cut(s) 325, 672, 912, 947
Hsp92II CATG 6 cut(s) 167, 816, 893, 941, 965, 988
HspAI GCGC 3 cut(s) 281, 925, 1179
KroI GCCGGC 1 cut(s) 66
KroNI GCCGGC 1 cut(s) 68
Kzo9I GATC 6 cut(s) 304, 411, 807, 820, 1000, 1099
LmnI GCTCC 3 cut(s) 63, 333, 645
Lsp1109I GCAGC 7 cut(s) 227, 349, 680, 688, 743, 790, 1188
LweI GCATC 3 cut(s) 574, 879, 1076
MaeIII GTNAC 1 cut(s) 148
MalI GATC 6 cut(s) 306, 413, 809, 822, 1002, 1101
MbiI CCGCTC 1 cut(s) 633
MboI GATC 6 cut(s) 304, 411, 807, 820, 1000, 1099
MboII GAAGA 3 cut(s) 18, 21, 1099
MfeI CAATTG 2 cut(s) 498, 687
MflI RGATCY 2 cut(s) 1000, 1099
MhlI GDGCHC 2 cut(s) 777, 979
MluCI AATT 8 cut(s) 16, 119, 191, 251, 498, 687, 1116, 1144
MlyI GAGTC 3 cut(s) 113, 440, 515
MmeI TCCRAC 1 cut(s) 282
MroNI GCCGGC 1 cut(s) 66
MroXI GAANNNNTTC 1 cut(s) 159
MseI TTAA 2 cut(s) 564, 1019
MspA1I CMGCKG 2 cut(s) 176, 1105
MspI CCGG 1 cut(s) 67
MspR9I CCNGG 1 cut(s) 865
MunI CAATTG 2 cut(s) 498, 687
Mva1269I GAATGC 2 cut(s) 446, 625
MvaI CCWGG 1 cut(s) 865
MwoI GCNNNNNNNGC 4 cut(s) 10, 182, 479, 1054
NaeI GCCGGC 1 cut(s) 68
NdeII GATC 6 cut(s) 304, 411, 807, 820, 1000, 1099
NgoMIV GCCGGC 1 cut(s) 66
NlaIII CATG 6 cut(s) 167, 816, 893, 941, 965, 988
NlaIV GGNNCC 2 cut(s) 65, 1101
NmuCI GTSAC 1 cut(s) 148
PagI TCATGA 2 cut(s) 163, 889
PctI GAATGC 2 cut(s) 446, 625
PdiI GCCGGC 1 cut(s) 68
PdmI GAANNNNTTC 1 cut(s) 159
PfeI GAWTC 3 cut(s) 211, 385, 908
PflMI CCANNNNNTGG 1 cut(s) 207
PkrI GCNGC 7 cut(s) 242, 364, 670, 678, 733, 805, 1178
PleI GAGTC 3 cut(s) 112, 439, 515
PpsI GAGTC 3 cut(s) 112, 439, 515
Psp6I CCWGG 1 cut(s) 863
PspGI CCWGG 1 cut(s) 863
PspN4I GGNNCC 2 cut(s) 65, 1101
PspPI GGNCC 1 cut(s) 457
PstI CTGCAG 2 cut(s) 670, 1059
PstNI CAGNNNCTG 1 cut(s) 752
PsuI RGATCY 2 cut(s) 1000, 1099
PvuII CAGCTG 1 cut(s) 176
RsaI GTAC 1 cut(s) 860
RsaNI GTAC 1 cut(s) 859
SaqAI TTAA 2 cut(s) 564, 1019
SatI GCNGC 7 cut(s) 241, 363, 669, 677, 732, 804, 1177
Sau3AI GATC 6 cut(s) 304, 411, 807, 820, 1000, 1099
Sau96I GGNCC 1 cut(s) 457
ScaI AGTACT 1 cut(s) 860
SchI GAGTC 3 cut(s) 113, 440, 515
ScrFI CCNGG 1 cut(s) 865
SduI GDGCHC 2 cut(s) 777, 979
SfaNI GCATC 3 cut(s) 574, 879, 1076
SfcI CTRYAG 2 cut(s) 666, 1055
Sse9I AATT 8 cut(s) 16, 119, 191, 251, 498, 687, 1116, 1144
SsiI CCGC 6 cut(s) 296, 314, 544, 631, 854, 1103
StyD4I CCNGG 1 cut(s) 863
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 1 cut(s) 159
TaqI TCGA 7 cut(s) 56, 469, 823, 966, 1044, 1070, 1164
TasI AATT 8 cut(s) 16, 119, 191, 251, 498, 687, 1116, 1144
TatI WGTACW 1 cut(s) 858
TfiI GAWTC 3 cut(s) 211, 385, 908
Tru1I TTAA 2 cut(s) 564, 1019
Tru9I TTAA 2 cut(s) 564, 1019
TscAI CASTG 2 cut(s) 115, 457
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 7 cut(s) 240, 362, 668, 676, 731, 803, 1176
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 6 cut(s) 152, 204, 333, 878, 906, 1157
TspGWI ACGGA 4 cut(s) 455, 910, 1121, 1169
TspRI CASTG 2 cut(s) 115, 457
Van91I CCANNNNNTGG 1 cut(s) 207
VneI GTGCAC 1 cut(s) 975
XapI RAATTY 1 cut(s) 251
XcmI CCANNNNNNNNNTGG 2 cut(s) 605, 935
XmnI GAANNNNTTC 1 cut(s) 159
ZrmI AGTACT 1 cut(s) 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.