Rw7G031200

Protein BYPASS1-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0011567
Physical Location & Seq
Reverse (-)
44505730 .. 44507878
2149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G031200.1

Sequence Viewer

Length: 1185 bp
ATGCCTTCCACATATAATCATGCAGCAGGTTCTTCTTCACCTTTGACTTCATTAGGTCGCTCCATTTGGACTCGGCGAGAACAGTTGCATTCCGTTGAAGATAATCATGAGTCTAGTGCCCAGGAGTTAGAGCTTCAATATTTTCAGAAACATGTTGCAGACCTATTTCATGACTTGTCGGGTGTTGGTGCTGATGAGCTGCTCTCTATTGCATGGACTCAGAAGCTTTTAGATGTTTTCATCAGCTGCCTAGAGGAATTCAGAGGTATCTTTCTGAAGAACAAAGAAGATATTTCTAAACCACCCATGGACCATTGGACTGATGCATACTTAGATAGGAGTTTGAAGGCACTTGACATTTGCAATGCAGCTCGTGATGGGATTGATAAGATTCGTATGTGGCATAAGCATTTAGAGATTGTTCTGTGTGCCTTGGATTCTCGCCAGAGGCCATATTGTGAGGGCCAGTTCCGTCGAGCAAGAAAGGCTTTGATGGATTTGGCACTTGAAATGCTTGATGGGAAAGACTCTGGGTCTGCATTTTCACAGCGGAATTGGTCTTTTGGGCGTCACAACACAAGAAAGGATCGCCACCGCCGTACCTCATCAGGACATTCTCGCTCTCACTCATGGAGCATATCCGCTTCTTGGTCTGCAGCTAAGCAGCTGCAATCAATTGCAAACAACTTGGTAGCACCTCGTGGGAATGAAAATGCTGCAACCAATGGGCTTGTAGGATCTGTATTCACAATGAGTTCTGTGCTCATGTTTGTGTTGTCAGCTCTTGTTGCTGCAATACCTTGTCAGGATCGAGGCCTTAATACTCATTTTTCCATCCCACCACAGTACTCCTGGGGTATCCCCCTAATCTCACTTCATGAACGGATAATGGAAGAATCTAAGAAGCGGGAGCGTCAGAGTTCCAATGGATTGCTGAAGGAGATTTATCAGGTTGAGAAATGCACACGCCACATGACAGAGTTTGTTGATCTGGTTCAATTCCCATTGACAGAGGAACAGAAAATGGAACTTGAACAAGTACTTGAGGAGTTAGCATCGATCTGTGAAAAGTTTAAGAATGGATTGGGTCCACTGGAACGCCAAATTAGGGATGTATTCCGCAGGATTCTTAATTGCCGAACTGAGGGTCTTGAACTTTTGAGTAAGGGAAGCAATCTGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1

Protein Analysis

394

Amino Acids

44.91

Weight (kDa)

6.95

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ROH1-like PF05633 19 - 387 2.6e-132 Protein ROH1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 17
AciI CCGC 5 cut(s) 550, 595, 642, 907, 1120
AclWI GGATC 3 cut(s) 594, 745, 816
AcsI RAATTY 1 cut(s) 257
AcuI CTGAAG 2 cut(s) 296, 956
AcyI GRCGYC 1 cut(s) 568
AdeI CACNNNGTG 1 cut(s) 701
AfaI GTAC 3 cut(s) 601, 848, 1041
AfiI CCNNNNNNNGG 3 cut(s) 648, 1108, 1144
AflIII ACRYGT 1 cut(s) 151
AgsI TTSAA 7 cut(s) 98, 137, 346, 509, 998, 1034, 1154
AhdI GACNNNNNGTC 1 cut(s) 532
AjnI CCWGG 2 cut(s) 120, 851
AluBI AGCT 8 cut(s) 133, 199, 226, 246, 371, 659, 667, 782
AluI AGCT 8 cut(s) 133, 199, 226, 246, 371, 659, 667, 782
Alw21I GWGCWC 1 cut(s) 765
AlwI GGATC 3 cut(s) 594, 745, 816
AoxI GGCC 3 cut(s) 449, 463, 814
ApeKI GCWGC 9 cut(s) 23, 199, 246, 368, 656, 664, 667, 716, 791
ApoI RAATTY 1 cut(s) 257
ArsI GACNNNNNNTTYG 2 cut(s) 1132, 1164
AspS9I GGNCC 3 cut(s) 310, 463, 1088
AsuHPI GGTGA 1 cut(s) 30
AvaII GGWCC 2 cut(s) 310, 1088
BaeGI GKGCMC 1 cut(s) 121
BaeI ACNNNNGTAYC 2 cut(s) 583, 616
BauI CACGAG 2 cut(s) 372, 699
Bbv12I GWGCWC 1 cut(s) 765
BbvI GCAGC 9 cut(s) 35, 186, 233, 380, 654, 668, 676, 703, 778
BccI CCATC 4 cut(s) 371, 487, 512, 842
BceAI ACGGC 1 cut(s) 582
BciT130I CCWGG 2 cut(s) 122, 853
BciVI GTATCC 1 cut(s) 869
BfaI CTAG 2 cut(s) 114, 251
BfmI CTRYAG 1 cut(s) 654
BfuAI ACCTGC 1 cut(s) 17
BfuI GTATCC 1 cut(s) 869
BisI GCNGC 9 cut(s) 24, 200, 247, 369, 657, 665, 668, 717, 792
BlpI GCTNAGC 1 cut(s) 660
BlsI GCNGC 9 cut(s) 25, 201, 248, 370, 658, 666, 669, 718, 793
BmcAI AGTACT 2 cut(s) 848, 1041
Bme1390I CCNGG 2 cut(s) 122, 853
Bme18I GGWCC 2 cut(s) 310, 1088
BmeRI GACNNNNNGTC 1 cut(s) 532
BmgT120I GGNCC 3 cut(s) 310, 463, 1088
BmiI GGNNCC 1 cut(s) 1089
BmrFI CCNGG 2 cut(s) 122, 853
BmsI GCATC 2 cut(s) 313, 1064
BplI GAGNNNNNCTC 2 cut(s) 188, 220
Bpu1102I GCTNAGC 1 cut(s) 660
BpuEI CTTGAG 1 cut(s) 1064
Bsa29I ATCGAT 1 cut(s) 1058
BsaHI GRCGYC 1 cut(s) 568
BsaJI CCNNGG 4 cut(s) 120, 306, 432, 852
Bsc4I CCNNNNNNNGG 3 cut(s) 648, 1108, 1144
Bse1I ACTGG 2 cut(s) 466, 1098
Bse3DI GCAATG 1 cut(s) 370
BseBI CCWGG 2 cut(s) 122, 853
BseCI ATCGAT 1 cut(s) 1058
BseDI CCNNGG 4 cut(s) 120, 306, 432, 852
BseGI GGATG 2 cut(s) 834, 1117
BseLI CCNNNNNNNGG 3 cut(s) 648, 1108, 1144
BseMI GCAATG 1 cut(s) 370
BseMII CTCAG 2 cut(s) 233, 1134
BseNI ACTGG 2 cut(s) 466, 1098
BseRI GAGGAG 1 cut(s) 1061
BseSI GKGCMC 1 cut(s) 121
BseXI GCAGC 9 cut(s) 35, 186, 233, 380, 654, 668, 676, 703, 778
BshFI GGCC 3 cut(s) 451, 465, 816
BshVI ATCGAT 1 cut(s) 1058
BsiHKAI GWGCWC 1 cut(s) 765
BslI CCNNNNNNNGG 3 cut(s) 648, 1108, 1144
BsmI GAATGC 1 cut(s) 88
BsnI GGCC 3 cut(s) 451, 465, 816
Bsp1286I GDGCHC 2 cut(s) 121, 765
Bsp143I GATC 5 cut(s) 586, 737, 808, 988, 1059
Bsp1720I GCTNAGC 1 cut(s) 660
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 5 cut(s) 550, 595, 642, 907, 1120
BspANI GGCC 3 cut(s) 451, 465, 816
BspCNI CTCAG 2 cut(s) 232, 1135
BspDI ATCGAT 1 cut(s) 1058
BspHI TCATGA 3 cut(s) 106, 169, 877
BspLI GGNNCC 1 cut(s) 1089
BspMAI CTGCAG 1 cut(s) 658
BspMI ACCTGC 1 cut(s) 17
BspPI GGATC 3 cut(s) 594, 745, 816
BsrDI GCAATG 1 cut(s) 370
BsrI ACTGG 2 cut(s) 466, 1098
BssECI CCNNGG 4 cut(s) 120, 306, 432, 852
BssMI GATC 5 cut(s) 586, 737, 808, 988, 1059
BssNI GRCGYC 1 cut(s) 568
BssSI CACGAG 2 cut(s) 372, 699
BssT1I CCWWGG 2 cut(s) 306, 432
Bst2BI CACGAG 2 cut(s) 372, 699
Bst2UI CCWGG 2 cut(s) 122, 853
Bst4CI ACNGT 2 cut(s) 84, 846
BstACI GRCGYC 1 cut(s) 568
BstDEI CTNAG 5 cut(s) 219, 331, 660, 900, 1143
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 2 cut(s) 834, 1117
BstKTI GATC 5 cut(s) 589, 740, 811, 991, 1062
BstMBI GATC 5 cut(s) 586, 737, 808, 988, 1059
BstMWI GCNNNNNNNGC 2 cut(s) 485, 788
BstNI CCWGG 2 cut(s) 122, 853
BstNSI RCATGY 1 cut(s) 155
BstSCI CCNGG 2 cut(s) 120, 851
BstSFI CTRYAG 1 cut(s) 654
BstSLI GKGCMC 1 cut(s) 121
BstV1I GCAGC 9 cut(s) 35, 186, 233, 380, 654, 668, 676, 703, 778
BstX2I RGATCY 1 cut(s) 737
BstYI RGATCY 1 cut(s) 737
Bsu15I ATCGAT 1 cut(s) 1058
BsuI GTATCC 1 cut(s) 869
BsuRI GGCC 3 cut(s) 451, 465, 816
BsuTUI ATCGAT 1 cut(s) 1058
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 2 cut(s) 834, 1117
BtsIMutI CAGTG 1 cut(s) 1091
BveI ACCTGC 1 cut(s) 17
CciI TCATGA 3 cut(s) 106, 169, 877
Cfr13I GGNCC 3 cut(s) 310, 463, 1088
ClaI ATCGAT 1 cut(s) 1058
CseI GACGC 2 cut(s) 557, 902
Csp6I GTAC 3 cut(s) 600, 847, 1040
CviQI GTAC 3 cut(s) 600, 847, 1040
DdeI CTNAG 5 cut(s) 219, 331, 660, 900, 1143
DpnI GATC 5 cut(s) 588, 739, 810, 990, 1061
DpnII GATC 5 cut(s) 586, 737, 808, 988, 1059
DraIII CACNNNGTG 1 cut(s) 701
DriI GACNNNNNGTC 1 cut(s) 532
Eam1105I GACNNNNNGTC 1 cut(s) 532
Eco130I CCWWGG 2 cut(s) 306, 432
Eco147I AGGCCT 1 cut(s) 816
Eco47I GGWCC 2 cut(s) 310, 1088
Eco57I CTGAAG 2 cut(s) 296, 956
EcoRI GAATTC 1 cut(s) 257
EcoRII CCWGG 2 cut(s) 120, 851
EcoT14I CCWWGG 2 cut(s) 306, 432
EcoT22I ATGCAT 1 cut(s) 328
ErhI CCWWGG 2 cut(s) 306, 432
FalI AAGNNNNNCTT 2 cut(s) 472, 504
FauI CCCGC 1 cut(s) 900
Fnu4HI GCNGC 9 cut(s) 24, 200, 247, 369, 657, 665, 668, 717, 792
FokI GGATG 2 cut(s) 821, 1124
Fsp4HI GCNGC 9 cut(s) 24, 200, 247, 369, 657, 665, 668, 717, 792
FspBI CTAG 2 cut(s) 114, 251
GluI GCNGC 9 cut(s) 24, 200, 247, 369, 657, 665, 668, 717, 792
HaeIII GGCC 3 cut(s) 451, 465, 816
HgaI GACGC 2 cut(s) 557, 902
Hin1I GRCGYC 1 cut(s) 568
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 8 cut(s) 70, 110, 217, 391, 437, 527, 896, 1126
HphI GGTGA 1 cut(s) 30
Hpy166II GTNNAC 1 cut(s) 1091
Hpy188I TCNGA 5 cut(s) 147, 222, 263, 276, 918
Hpy188III TCNNGA 8 cut(s) 107, 170, 374, 609, 806, 878, 1151, 1178
Hpy8I GTNNAC 1 cut(s) 1091
Hpy99I CGWCG 1 cut(s) 477
HpyAV CCTTC 3 cut(s) 15, 340, 931
HpyCH4III ACNGT 2 cut(s) 84, 846
HpyF10VI GCNNNNNNNGC 2 cut(s) 485, 788
HpyF3I CTNAG 5 cut(s) 219, 331, 660, 900, 1143
Hsp92I GRCGYC 1 cut(s) 568
Kzo9I GATC 5 cut(s) 586, 737, 808, 988, 1059
LmnI GCTCC 3 cut(s) 65, 633, 910
Lsp1109I GCAGC 9 cut(s) 35, 186, 233, 380, 654, 668, 676, 703, 778
LweI GCATC 2 cut(s) 313, 1064
MaeI CTAG 2 cut(s) 114, 251
MaeIII GTNAC 1 cut(s) 569
MalI GATC 5 cut(s) 588, 739, 810, 990, 1061
MboI GATC 5 cut(s) 586, 737, 808, 988, 1059
MboII GAAGA 6 cut(s) 24, 27, 110, 289, 299, 905
MfeI CAATTG 1 cut(s) 675
MflI RGATCY 1 cut(s) 737
MhlI GDGCHC 2 cut(s) 121, 765
MluCI AATT 6 cut(s) 257, 553, 675, 998, 1104, 1132
MlyI GAGTC 4 cut(s) 64, 119, 211, 521
Mph1103I ATGCAT 1 cut(s) 328
MseI TTAA 3 cut(s) 819, 1074, 1131
MslI CAYNNNNRTG 1 cut(s) 770
MspA1I CMGCKG 3 cut(s) 246, 550, 667
MspR9I CCNGG 2 cut(s) 122, 853
MunI CAATTG 1 cut(s) 675
Mva1269I GAATGC 1 cut(s) 88
MvaI CCWGG 2 cut(s) 122, 853
MwoI GCNNNNNNNGC 2 cut(s) 485, 788
NcoI CCATGG 1 cut(s) 306
NdeII GATC 5 cut(s) 586, 737, 808, 988, 1059
NlaIV GGNNCC 1 cut(s) 1089
NmeAIII GCCGAG 1 cut(s) 52
NmuCI GTSAC 1 cut(s) 569
NsiI ATGCAT 1 cut(s) 328
NspI RCATGY 1 cut(s) 155
PagI TCATGA 3 cut(s) 106, 169, 877
PceI AGGCCT 1 cut(s) 816
PciI ACATGT 1 cut(s) 151
PcsI WCGNNNNNNNCGW 1 cut(s) 595
PctI GAATGC 1 cut(s) 88
PfeI GAWTC 4 cut(s) 391, 437, 896, 1126
PkrI GCNGC 9 cut(s) 25, 201, 248, 370, 658, 666, 669, 718, 793
PleI GAGTC 4 cut(s) 64, 118, 211, 521
PpsI GAGTC 4 cut(s) 64, 118, 211, 521
PscI ACATGT 1 cut(s) 151
Psp6I CCWGG 2 cut(s) 120, 851
PspGI CCWGG 2 cut(s) 120, 851
PspN4I GGNNCC 1 cut(s) 1089
PspPI GGNCC 3 cut(s) 310, 463, 1088
PstI CTGCAG 1 cut(s) 658
PsuI RGATCY 1 cut(s) 737
PvuII CAGCTG 2 cut(s) 246, 667
RsaI GTAC 3 cut(s) 601, 848, 1041
RsaNI GTAC 3 cut(s) 600, 847, 1040
RseI CAYNNNNRTG 1 cut(s) 770
SaqAI TTAA 3 cut(s) 819, 1074, 1131
SatI GCNGC 9 cut(s) 24, 200, 247, 369, 657, 665, 668, 717, 792
Sau3AI GATC 5 cut(s) 586, 737, 808, 988, 1059
Sau96I GGNCC 3 cut(s) 310, 463, 1088
ScaI AGTACT 2 cut(s) 848, 1041
SchI GAGTC 4 cut(s) 64, 119, 211, 521
ScrFI CCNGG 2 cut(s) 122, 853
SduI GDGCHC 2 cut(s) 121, 765
SfaNI GCATC 2 cut(s) 313, 1064
SfcI CTRYAG 1 cut(s) 654
SinI GGWCC 2 cut(s) 310, 1088
SmiMI CAYNNNNRTG 1 cut(s) 770
SmlI CTYRAG 1 cut(s) 1043
SmoI CTYRAG 1 cut(s) 1043
Sse9I AATT 6 cut(s) 257, 553, 675, 998, 1104, 1132
SseBI AGGCCT 1 cut(s) 816
SsiI CCGC 5 cut(s) 550, 595, 642, 907, 1120
SspI AATATT 1 cut(s) 140
SspMI CTAG 2 cut(s) 114, 251
StuI AGGCCT 1 cut(s) 816
StyD4I CCNGG 2 cut(s) 120, 851
StyI CCWWGG 2 cut(s) 306, 432
TaaI ACNGT 2 cut(s) 84, 846
TaqI TCGA 3 cut(s) 475, 811, 1058
TasI AATT 6 cut(s) 257, 553, 675, 998, 1104, 1132
TatI WGTACW 2 cut(s) 846, 1039
TfiI GAWTC 4 cut(s) 391, 437, 896, 1126
Tru1I TTAA 3 cut(s) 819, 1074, 1131
Tru9I TTAA 3 cut(s) 819, 1074, 1131
TscAI CASTG 1 cut(s) 1098
TseFI GTSAC 1 cut(s) 569
TseI GCWGC 9 cut(s) 23, 199, 246, 368, 656, 664, 667, 716, 791
Tsp45I GTSAC 1 cut(s) 569
TspDTI ATGAA 6 cut(s) 39, 158, 229, 723, 866, 894
TspGWI ACGGA 3 cut(s) 82, 461, 898
TspRI CASTG 1 cut(s) 1098
VpaK11BI GGWCC 2 cut(s) 310, 1088
XapI RAATTY 1 cut(s) 257
XceI RCATGY 1 cut(s) 155
XcmI CCANNNNNNNNNTGG 1 cut(s) 849
XspI CTAG 2 cut(s) 114, 251
ZrmI AGTACT 2 cut(s) 848, 1041
Zsp2I ATGCAT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.